Structure of 2376-00-3
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 2376-00-3 |
Formula : | C8H4ClF3O2 |
M.W : | 224.56 |
SMILES Code : | O=C(O)C1=C(C(F)(F)F)C=CC=C1Cl |
MDL No. : | MFCD06208254 |
Boiling Point : | No data available |
InChI Key : | OHWGZCNPFKBCDJ-UHFFFAOYSA-N |
Pubchem ID : | 11127965 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 14 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.12 |
Num. rotatable bonds | 2 |
Num. H-bond acceptors | 5.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 43.41 |
TPSA ? Topological Polar Surface Area: Calculated from |
37.3 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.42 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
2.83 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
4.21 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
3.24 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.91 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
2.92 |
Log S (ESOL):? ESOL: Topological method implemented from |
-3.2 |
Solubility | 0.142 mg/ml ; 0.00063 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-3.27 |
Solubility | 0.12 mg/ml ; 0.000536 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-3.28 |
Solubility | 0.118 mg/ml ; 0.000524 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-5.66 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.56 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.59 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
The mixture of 500mg of 3-chlorobenzotrifuluoride and 3ml of tetrahydrofuran was cooled down to -50C and 2ml of 1.6M n-butyllithium hexan solution was added and stirred for 1 hour. The mixture was put into dry ice and diluted by an aqueous solution of 1N sodium hydroxide. After washing it with toluene, the water layer was made acidic by hydrochloric acid and extracted with ethyl acetate. The crude material obtained by removing the solvent was purified by reverse phase HPLC to the said compound. Yield 244mg H-NMR (DMSO-d6) δ 7.68 (1H, t), 7.80 (1H, d), 7.88 (1H, d). MS (ESI, m/z) 223 (M-H)- | ||
1 described above from 3-chloro-benzotrifluoride via the intermediates 2-chloro-6-trifluoromethyl-benzoic acid (m.p. 120-123 C), 2-chloro-6-trifluoromethyl-aniline (an oil), and 2-chloro-6-trifluoromethyl-formanilide (m.p. 167-170 C). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
6.23 g | With dimethylsulfide borane complex; In tetrahydrofuran; at 0 - 60℃; for 92h;Inert atmosphere; | Borane-methyl sulfide complex (44.6 mL, 89.2 mmol, 2.0 M) was added dropwise to the solution of <strong>[2376-00-3]2-chloro-6-(trifluoromethyl)benzoic acid</strong> (5.0 g, 22.3 mmol) at 0 C under argon atmosphere. The resulting mixture was stirred at 60 C for 27 h. LCMS indicated the reactant was remained. Then, borane-methyl sulfide complex (33.5 mL, 66.9 mmol, 2.0 M) was added dropwise at 0 C. The resulting mixture was reacted at 60 C for 65 h. After cooling to room temperature, the reaction mixture was adjusted to about pH = 11 with 2.0 M sodium hydroxide solution, diluted with water (200 mL), extracted with diethyl ether (100 mL × 3). The combined organic layers were washed with brine (100 mL × 2), dried over sodium sulfate, filtered and concentrated under reduced pressure to afford the product (2-chloro-6-(trifluoromethyl)phenyl)methanol as a brown solid (6.23 g). LCMS: LC retention time 1.89 min. MS (ESI) m/z 193 [M-17]+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
The mixture of <strong>[2376-00-3]2-chloro-6-(trifluoromethyl)benzoic acid</strong> (i-la) (1.5 g, 6.70 mol) and (COCl)2 (1.1 ml, 13.4 mol) in DCM (20 ml) and DMF (5drops) was stirred at room temperature for 2h.Then MeOH (0.41 ml, 13.4 mol) was added dropwise and the reaction mixture was stirred at room temperature for another 30min.The result solution was diluted with H20 (50 ml) and the aqueous layer was extracted with DCM(50ml><2). The combined organic layers were washed with brine (50 ml x 1), dried over anhydrous Na2S04 and concentrated to get the desired product i-lb as a pale yellow oil. LCMS (ESI) calc'd for C9H6C1F302 [M+H] +: 239, found: 239. | ||
A mixture of <strong>[2376-00-3]2-chloro-6-(trifluoromethyl)benzoic acid</strong> (i-la) (1.5 g, 6.70 mmol) and (COCl)2 (1.1 ml, 12.8 mmol) in DCM (20 ml) and DMF (5 drops) were stirred at room temperature for 2h. MeOH (0.41 ml, 13.4 mmol) was added dropwise and the reaction mixture was stirred at room temperature for another 30min.The resultant solution was diluted with H20 (50 ml) and the aqueous layer was extracted with DCM (50ml x 2). The combined organic layers were washed with brine (50 ml x 1), dried over anhydrous Na2S04 and concentrated to obtain the title compound i-lb as a pale yellow oil. LCMS (ESI) calc'd for C9H6C1F302 [M+H] +: 239, found: 239. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
The mixture of <strong>[2376-00-3]2-chloro-6-(trifluoromethyl)benzoic acid</strong> (B-2) (0.46 g, 2.07 mol) and (COCl)2 (0.32 mL, 3.76 mol) in DCM (10 mL) and DMF (5drops) was stirred at room temperature for lh. The solvent was removed and the residue was dissolved in DCM (10 mL). To the mixture of 3-iodo-lH-indazole-4-carbaldehyde (B-l) (0.51 g, 1.88 mol), DMAP (23 mg,0.19 mol) and Et3N (0.52 mL, 3.76 mol) in DCM (10 mL) was added the aboved DCM solution dropwise and the reaction mixture was stirred at room temperature overnight. The result solution was diluted with H20 (50 mL) and the aqueous layer was extracted with DCM (30 mLx3). The combined organic layers were washed with brine (30 mLx l),dried over anhydrous Na2S04 and concentrated. The residue was chromatographed on silica gel(PE:EA 8: 1 to 4: 1) to get the desired product B-3 as a white solid. LCMS (ESI) calc'd for Ci6H7ClF3lN202 [M+H]+: 479, found: 479. |