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CAS No. : | 29241-65-4 | MDL No. : | MFCD03844847 |
Formula : | C6H3BrClNO2 | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | UKNYSJCAGUXDOQ-UHFFFAOYSA-N |
M.W : | 236.45 | Pubchem ID : | 2763342 |
Synonyms : |
|
Num. heavy atoms : | 11 |
Num. arom. heavy atoms : | 6 |
Fraction Csp3 : | 0.0 |
Num. rotatable bonds : | 1 |
Num. H-bond acceptors : | 3.0 |
Num. H-bond donors : | 1.0 |
Molar Refractivity : | 43.91 |
TPSA : | 50.19 Ų |
GI absorption : | High |
BBB permeant : | Yes |
P-gp substrate : | No |
CYP1A2 inhibitor : | No |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -6.3 cm/s |
Log Po/w (iLOGP) : | 1.29 |
Log Po/w (XLOGP3) : | 2.03 |
Log Po/w (WLOGP) : | 2.2 |
Log Po/w (MLOGP) : | 0.25 |
Log Po/w (SILICOS-IT) : | 2.08 |
Consensus Log Po/w : | 1.57 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 0.0 |
Bioavailability Score : | 0.56 |
Log S (ESOL) : | -2.92 |
Solubility : | 0.283 mg/ml ; 0.0012 mol/l |
Class : | Soluble |
Log S (Ali) : | -2.71 |
Solubility : | 0.459 mg/ml ; 0.00194 mol/l |
Class : | Soluble |
Log S (SILICOS-IT) : | -2.87 |
Solubility : | 0.316 mg/ml ; 0.00134 mol/l |
Class : | Soluble |
PAINS : | 0.0 alert |
Brenk : | 1.0 alert |
Leadlikeness : | 1.0 |
Synthetic accessibility : | 1.66 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H315-H319-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
99% | Stage #1: With thionyl chloride In N,N-dimethyl-formamide at 70℃; for 4 h; Stage #2: With water In N,N-dimethyl-formamide for 1 h; |
Step B. 5-Bromo-2-chloro-nicotinic acid. A mixture of 5-bromo-2-hydroxy-nictonic acid (32.9 g, 0.151 mol), SOCl2 (167 mL), and DMF (10.5 mL) was heated at 70° C. for 4 h. The mixture was concentrated, cooled to 0° C., and quenched slowly with H2O to give an off-white precipitate. The precipitate was stirred in H2O for 1 h, and then was collected by filtration and dried under vacuum to give the title compound (35.5 g, 99percent). The product was carried on to the next step without purification, but alternatively may be recrystallized from hot H2O. MS (ESI): mass calcd. for C6H3BrClNO2, 234.90; m/z found, 236.2 [M+H]+. 1H NMR (acetone-d6): 8.66 (d, J=2.5, 1H), 8.43 (d, J=2.5, 1H). |
47% | With thionyl chloride In N,N-dimethyl-formamide for 3 h; Reflux | 5-Bromo-2-chloropyridine-3 -carboxylic acidTo 5-bromo-2-hydroxypyridine-3-carboxylic acid (Intermediate 10, 14 g, 64.2 mmol) was added thionyl chloride (70 mL) and dimethylformamide (8 mL). The reaction mixture was heated to reflux for 3 h. After cooling, the excess thionyl chloride was removed by rotary evaporation and the residue was poured into water (1 L) and extracted with ethyl acetate (3 x 100 mL). The organic layer was dried over anhydrous sodium sulphate then filtered and concentrated to afford 7.0 g (47percent) of 5 -bromo-2-chloropyridine-3 -carboxylic acid. 1H NMR (400 MHz. DMSO-AO: δ 8.44 (s, IH), 8.72 (s, IH). Mass (APCI -ve Scan): m/z 235.9 (M-H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | Stage #1: at 60℃; for 36 h; Stage #2: With sodium hydrogencarbonate In water |
To 0.5 L flask charged with 5-Bromo-2-chloronicotinic acid (25.0 g, 106.4 mmol) in MeOH (250 mL) was added H2SO4 (5 mL). The mixture was heated to 60° C., stirred for 1.5 day. LC-MS indicated full conversion of starting material at this time. The reaction was cooled to RT and the volatile components removed in vacuo. The crude residue was dissolved in EtOAc (300 mL), quenched with sat. aqueous Na(HCO3)2 (200 mL). The organic layer was separated, washed with brine, dried over MgSO4 and concentrated to afford the compound, methyl-5-bromo-2-chloronicotinate, as a while solid (quantitative yield). LC-MS (M+H)=250.1. |
89% | for 15 h; Reflux | Sulfuric acid (2 mL, 52.1 mmol) was added to the suspension of 5-bromo-2-chloronicotinic acid (1) (12.3 g, 52 mmol) was in methanol (100 mL). The mixture was stirred and refluxed for 15 hours. The solvent was evaporated and the residue was neutralized with saturated aqueous NaHC03(aq.). The result suspension was filtered and the solid was washed by water and dried by pump. Methyl 5-bromo-2-chloronicotinate (2) (11.6 g, 89 percent yield) was afforded. NMR (400 MHz, CDCL) δ 8.53 (d, J = 2.4 Hz, 1H), 8.25 (d, J = 2.4 Hz, 1H), 3.93 (s, 3H). 13C NMR (101 MHz, CDCL) δ 163.58, 152.75, 148.61, 142.49, 127.64, 118.57, 53.10. ESI-MS m/z: 251.9 (M+H+). |
85% | at 90℃; for 12 h; | To a solution of 5-bromo-2-chloronicotinic acid (50 g, 211 mmol) in MeOH (200 mL) was added H2SO4 (20.7 g, 211.46 mmol) at 25 °C. The mixture heated to 90 °C and stirred for 12 hours. LCMS showed that the reaction was complete. The reaction was neutralized with Na2CO3 to pH = 7-8 and concentrated under reduced pressure to remove MeOH. The residue was extracted with EtOAc (300 mL x 3). The combined organic layer was concentrated under reduced pressure to give methyl 5-bromo-2-chloronicotinate (45 g, 180 mmol, 85percent yield) as a brown solid. ESI-MS (m/z): 249.9 (M+H)+ |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
69% | at 0℃; for 1 h; | Example 24; A. Methyl 5-bromo-2-chloropyridine-3-carboxylate; To a solution of S-bromo-l-chloropyridine-S-carboxylic acid (1.0 g, 4.2 mmol) in methanol :benzene (1 :1, 50 mL) was added trimethylsilyldiazomethane (3.2 mL, 6.5 mmol) at 0 0C. The reaction mixture was then stirred at 0 0C for 60 min. The reaction mixture was concentrated under reduced pressure. The residue was diluted with ethyl acetate (40 mL), washed with water (10 mL x 2). The aqueous layer was extracted with ethyl acetate (50 mL x 2). The combined organic layers were washed with brine solution (50 mL), dried over anhydrous MgSO4 and evaporated under reduced pressure to provide the crude product. The crude product was purified through a filter column (Silica gel, 100-200 mesh) to provide methyl 5-bromo-2-chloropyridine-3-carboxylate as an off- white solid (0.72 g, 69percent). LC-MS: [M+H] + 251 1H NMR (400 MHz, CDCl3) δ: ppm 8.59 (s, IH) 8.35 (s, IH), 3.99 (s, 3H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
82% | Stage #1: With oxalyl dichloride; N,N-dimethyl-formamide In dichloromethane at 20℃; for 3 h; Stage #2: at -10 - 20℃; for 18 h; |
Preparation 1775-Bromo-2-chloronicotinamide To a suspension of 5-bromo-2-chloronicotinic acid (20 g, 84.6 mmol) and oxalyl chloride (12.9 g,101.5 mmol) in DCM (500 mL) was added DMF (618 mg, 8.46 mmol) at room temperature. Thereaction effervesced and was stirred for 3 hours before concentrating to half volume in vacuo. The resulting solution was added carefully to a solution of 7N methanolic ammonia (50 mL) in DCM (200 mL) at -10°C, and the reaction was stirred for 18 hours at room temperature. The reaction was concentrated in vacuo, diluted with EtOAc (1 L), washed with water (500 mL), dried over sodium sulphate and concentrated in vacuo. The residue was triturated with cold DCM (200mL) to afford the title compound as a colourless solid (16.3 g, 82percent). 1H NMR (400 MHz, DMSO-d6): O ppm 7.81 (s, 1H), 8.08 (s, 1H), 8.21 (d, 1H), 8.63 (d, 1H). |
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