Structure of 38116-61-9
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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| CAS No. : | 38116-61-9 |
| Formula : | C7H7NO3 |
| M.W : | 153.14 |
| SMILES Code : | O=C(O)C1=C(O)N=C(C)C=C1 |
| MDL No. : | MFCD00460503 |
| InChI Key : | XRIHTJYXIHOBDQ-UHFFFAOYSA-N |
| Pubchem ID : | 94960 |
| GHS Pictogram: |
|
| Signal Word: | Warning |
| Hazard Statements: | H319 |
| Precautionary Statements: | P305+P351+P338 |
| Num. heavy atoms | 11 |
| Num. arom. heavy atoms | 6 |
| Fraction Csp3 | 0.14 |
| Num. rotatable bonds | 1 |
| Num. H-bond acceptors | 4.0 |
| Num. H-bond donors | 2.0 |
| Molar Refractivity | 38.19 |
| TPSA ? Topological Polar Surface Area: Calculated from |
70.42 Ų |
| Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
0.86 |
| Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.31 |
| Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
0.79 |
| Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
-0.96 |
| Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
0.7 |
| Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
0.54 |
| Log S (ESOL):? ESOL: Topological method implemented from |
-1.95 |
| Solubility | 1.71 mg/ml ; 0.0112 mol/l |
| Class? Solubility class: Log S scale |
Very soluble |
| Log S (Ali)? Ali: Topological method implemented from |
-2.39 |
| Solubility | 0.625 mg/ml ; 0.00408 mol/l |
| Class? Solubility class: Log S scale |
Soluble |
| Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-1.19 |
| Solubility | 9.8 mg/ml ; 0.064 mol/l |
| Class? Solubility class: Log S scale |
Soluble |
| GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
| BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
| P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
| CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
| CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
| CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
| CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
| CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
| Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.3 cm/s |
| Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
| Ghose? Ghose filter: implemented from |
None |
| Veber? Veber (GSK) filter: implemented from |
0.0 |
| Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
| Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
| Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.56 |
| PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
| Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
| Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
| Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.49 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 64.1% | With sulfuric acid; at 0℃; for 21h;Reflux; | To a solution of <strong>[38116-61-9]2-hydroxy-6-methylnicotinic acid</strong> (10.0 g, 0.0653 mole) in methanol (100 mL), sulfuric acid (3.5 mL) was added drop wise at 0 C and the mixture was stirred for 21 h under reflux. The reaction mixture was concentrated under reduced pressure, the residue was neutralized with saturated aqueous sodium bicarbonate solution under ice-cooling, and the mixture was extracted with 5 % methanol in chloroform (200 mL x 3). Organic layer was washed with brine solution (50 mL) and dried over Na2S04 and the solvent was concentrated under vacuum to afford the title compound. (0233) Yield: 7.0 g, 64.1%; 1H - NMR (DMSO- 6, 400 MHz) d ppm: 2.23 (s, 3H), 3.70 (s, 3H), 6.09 - 6.11 (d, J = 7.24 Hz, 1H), 7.98 - 8.00 (d, J = 7.36 Hz, 1H), 12.10 (s, 1H); Mass (m/z): 168.1 (M+H)+. |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 38 g | With lithium aluminium tetrahydride; In tetrahydrofuran; at 70℃; for 1h;Inert atmosphere; | Reference Production Example 40 (0661) To a mixture of 50.0 g of <strong>[38116-61-9]2-hydroxy-6-methylnicotinic acid</strong> and 500 ml tetrahydrofuran, 18.6 g of lithium aluminum hydride was added in a nitrogen atmosphere at 70 C. for 1 hour. To the reaction mixture, 19 ml of water was added dropwise under ice cooling, followed by stirring at 0 C. for 1 hour. Furthermore, 16 ml of an aqueous 15% sodium oxide solution was added dropwise, followed by stirring at room temperature for 1 hour. The reaction mixture was filtered through Cerite and the filtrate was concentrated under reduced pressure to obtain 38.0 g of 2-hydroxy-3-hydroxymethyl-6-methylpyridine (hereinafter referred to as 40A). (0662) 1H-NMR (DMSO-D6) delta:6.82 (1H, d, J=6.8 Hz), 5.83 (1H, d, J=6.8 Hz), 4.25 (2H, s), 2.06 (3H, s). |
| 38 g | With lithium hydroxide; In tetrahydrofuran; at 70℃; for 1h;Inert atmosphere; | In the 70 C, to 50.0g of 2-hydroxy-6-methyl-nicotinic acid and 500 ml mixture of tetrahydrofuran, is added in the nitrogen atmosphere 18.6g alchlor hydrogenation of 1 hour. Frozen under the, dropping to the reaction mixture 19 ml of water, then in the 0 C stirring 1 hour. Furthermore, dropping 16 ml of a 15% sodium hydroxide aqueous solution, followed by stirring at room temperature 1 hour. The reaction mixture is filtered through a Cerite, and the filtrate concentrated under reduced pressure, to obtain 38.0g of 2-hydroxy-3-hydroxymethyl-6-methylpyridine (called below 40A). |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 27% | With hydrogenchloride; In 1,4-dioxane; for 16h;Reflux; | Preparation 211ethyl 2-hydroxy-6-methylpyridine-3-carboxylate To a solution of <strong>[38116-61-9]2-hydroxy-6-methylpyridine-3-carboxylic acid</strong> (2.0 g, 13.06 mmol) in ethanol (20 mL), was added HCI in dioxane (10 mL) dropwise and the reaction was refluxed for 16 hours. The reaction was concentrated in vacuo and basified with saturated aqueous sodiumbicarbonate solution. The mixture was extracted with ethyl acetate (twice), the organic layers were combined, washed with water, brine, dried over sodium sulfate and concentrated in vacuo to afford the title compound as a white solid (650 mg, 27%). 1H NMR (400 MHz, DMSO-d6): O ppm 1.24 (t, 3H), 2.22 (s, 3H), 4.16 (q, 2H), 6.08 (d, 1H), 7.97(d, 1H). |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| EXAMPLE 1; Step A:; A solution of NaOCl (1.2 L, of 5%) was cooled to 0 0C in ice bath. 2-hydroxy-6- methylpyrridine-3-carboxylic acid 1-1 (100 g, 0.65mol) was added in small portions. The resulting homogenous mixture was stirred at 0 0C for 1 hour and then at 1O0C for 5 hours. Another portion NaOCl(300 mL, of 5%) was added at O0C and the mixture was stirred at 100C overnight. The solution was acidified to pH = 1 with 12N HCl, and the resulting solid was filtered, washed with water, and oven dried to afford white solid product 1-2 (m/z (ES) (M+H)+= 188). |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 56% | Diphenylphosphoryl azide (11.9 mL, 55 mmol) was added to a solution of <strong>[38116-61-9]2-hydroxy-6-methylpyridine-3-carboxylic acid</strong> (7.65 g, 50 mmol) and triethylamine (7.7 mL, 55 mmol) in dry dioxane (100 mL) and the resulting solution was heated to reflux. After 16 h more triethylamine (7.7 mL, 55 mmol) and benzyl alcohol (5.7 mL, 50 mmol) were added and the solution was refluxed for a further 24 h. The reaction mixture was concentrated in vacuo and the residue was partitioned between methylene chloride (200 mL) and brine (100 mL), acidified to pH 1 with 10% HCl. The organic layer was washed with saturated NaHCO3 (2×100 mL), brine (100 mL), dried over Na2SO4 and filtered. After evaporating the solvent in vacuo, methanol (100 mL) and hexane (20 mL) were added to the residue, the solid was collected, washed with methanol (50 mL) and dried to give the title compound as a white solid (7.2 g, 56%). 1H-NMR (300 MHz, CDCl3) delta12.82 (s, 1H), 8.06 (d, J=7.0 Hz, 1H),7.69 (s, 1H), 7.42 (m, 5H), 6.09 (d, J=7.5 Hz, 1H), 5.22 (s, 2H), 2.32 (s, 3H). |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 100% | In methanol; | Step A Methyl-2-hydroxy-6-methylpyridine-3-carboxylate Acetyl chloride (50 ml) was added cautiously to a stirred suspension of <strong>[38116-61-9]2-hydroxy-6-methylpyridine-3-carboxylic acid</strong> (14.3 g, 93.44 mmol) in dry methanol (500 ml) and the resulting solution was heated to reflux. After 16 h the solution was evaporated in vacuo to give the title compound (15.62 g, 100%) as a solid: 1 H NMR (DMSO) shows the methyl singlet at delta 3.71. |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 79% | Phosphorus oxybromide (21.53 g, 75 mmol) was added to the stirred solution of 2-hydroxy-6- methylnicotinic acid (5 g, 32.7 mmol), pyridine (0.475 mL, 5.88 mmol) in chlorobenzene (100 mL) at room temperature under nitrogen. The reaction mixture was refluxed for 1 h and concentrated under vacuum before treating with an excess of cold methanol. The solution was stirred for an additional 1 h and again concentrated under vacuum. The residue was dissolved in water and pH was adjusted to ~8.0 by adding K2CO3 before extraction of the product with CH2CI2. The organic layer was washed with water and brine solution, dried over anhydrous Na2S04. Filtrate was evaporated completely under reduced pressure to give crude residue. The resulted crude compound was purified by flash column chromatography (100-200 silica mesh, eluent was 30% EtOAc in pet ether) to obtained methyl 2-bromo-6-methylnicotinate (6.1 g, 79% yield) as colorless oil. 1H NMR (400 MHz, CDCI3): d 8.00 (d, /= 7.6 Hz, 1H), 7.18 (d, J = 8.0 Hz, 1H), 3.94 (s, 3H), 2.59 (s, 3H); LCMS (ES) m/z 230.0 (M+H)+ |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| In ethanol; n-heptane; phosphorus pentachloride; toluene; trichlorophosphate; | EXAMPLE 85A Ethyl 2-chloro-6-methyl pyridine-3-carboxylate To <strong>[38116-61-9]2-hydroxy-6-methyl pyridine-3-carboxylic acid</strong> (25 g, 0.163 mol) suspended in 50 mL of phosphorous oxychloride and cooled in an ice bath was added phosphorous pentachloride (68 g, 0.313 mol) in portions. The mixture was stirred at 115 C. for 2 hours. The phosphorous oxychloride was removed in vacuo and chased with toluene. Ethanol (80 mL) was added with cooling, and the solution was refluxed for 20 minutes. The ethanol was removed under reduced pressure and the residue obtained dissolved in toluene. The toluene solution was washed with sodium bicarbonate solution, dried over magnesium sulfate and concentrated in vacuo. The residue obtained was dissolved in heptane, stirred with silica gel and filtered. The filtrate was concentrated in vacuo to afford 25.10 g of the title compound. |
[ 38116-61-9 ]
[ 38116-61-9 ]
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 99% | 5-Bromo-2-hydroxy-6-methylnicotinc acid A solution of NaOBr was prepared by adding Br2 (11.4 g, 3.66 mL, 71.3 mmol) to a cooled (0 C.) and stirred solution of NaOH (7.8 g, 196 mmol) in water (90 mL). This solution was warmed to room temperature and was then added to a solution of commercially available (Aldrich) <strong>[38116-61-9]2-hydroxy-6-methylpyridine-3-carboxylic acid</strong> (10.0 g, 65.1 mmol) and NaOH (7.8 g, 196 mmol) in water (30 mL). After stirring for 5 min, the mixture was cooled to 0 C. and carefully acidified with conc. HCl. The precipitate was filtered and dried over MgSO4 to afford 5-bromo-2-hydroxy-6-methylnicotinc acid (15.0 g, 99%): 1H NMR (DMSO-d6) 8.25 (s, 1H), 2.41 (s, 3H); MH+: 232.0. Elemental analysis calculated for C7H6BrNO3: C, 36.23; H, 2.61; N, 6.04; Br, 34.44. Found: C, 36.07; H, 2.44; N, 5.91; Br, 34.43. | |
| Bromine (3.59 mL, 69.7 mmol) was added dropwise to a cooled solution (0C, ice bath) containing sodium hydroxide (15.6 g, 390 mmol) and water (120 mL). The solution was allowed to proceed at 0C for 15 minutes and allowed to warm to room temperature. 2-hydroxy-6- methylnicotinic acid was added and the resulting solution was maintained for 20 minutes. The solution was again cooled (0C, ice bath) and acidified to pH 1-2 by the dropwise addition of concentrated hydrochloric acid (20 mL). 5-bromo-2- hydroxy-6-methylnicotinic acid precipitated as a white solid and was collected by filtration. It was washed with water (500 mL) and allowed to air dry. m/z 233 (MH+). |
[ 38116-61-9 ]
[ 864244-74-6 ]
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 55% | With benzotriazol-1-ol; 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride; In DMF (N,N-dimethyl-formamide); at 20℃; for 72h; | To a solution of <strong>[38116-61-9]2-hydroxy-6-methylnicotinic acid</strong> (Lancaster, 72 mg, 0.47 mmol) and HOBt (50 mg) in DMF (5 mL) at rt was added EDCI.HCl (130 mg, 0.68 mmol) followed by 4-(4-amino-2-fluorophenoxy)pyridine-2-amine (Compound B of Example 24, 110 mg, 0.50 mmol), and the reaction mixture was stirred at rt over 72 h. Purification of the reaction mixture by preparative HPLC afforded the desired product (125 mg, 55%) as a beige-colored solid (TFA salt). 1H NMR (CD3OD) delta 8.46 (d, 1H, J=7.9 Hz), 8.03 (dd, 1H, J=12.7, 2.8 Hz), 7.83 (d, 1H, J=7.1 Hz), 7.44 (dd, 1H, J=8.8, 2.2 Hz), 7.33 (t, 1H, J=8.8 Hz), 6.67 (dd, 1H, J=7.7, 2.7 Hz), 6.45 (d, 1H, J=7.7 Hz), 6.21 (d, 1H, J=2.8 Hz), 2.40 (s, 3H); MS (ESI+) m/z 355.2 (M+H)+. |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 59% | With diphenyl-phosphinic acid; triethylamine; benzyl alcohol; In 1,4-dioxane; | Step A 3-Benzyloxycarbonylamino-6-methyl-2-pyridinone DPPA (35.6 ml, 165 mmol) was added to a stirred solution of <strong>[38116-61-9]2-hydroxy-6-methylpyridine-3-carboxylic acid</strong> (22.97 g, 165 mmol) and triethylamine (23.0 ml, 165 mmol) in dry dioxane (300 ml) and the resulting solution was heated to reflux. After 16 h more triethylamine (23.0 ml, 165 mmol) and benzyl alcohol (17.1 ml, 150 mmol) were added and the solution was refluxed for a further 24 h. The reaction was concentrated in vacuo to remove most of the volatiles. The residue was partitioned between methylene chloride (500 ml) and brine (500 ml), acidified to pH 1 with 1M HCl (165 ml). The aqueous layer was extracted with methylene chloride (2 times) and the combined organic layers were washed with sodium hydrogen carbonate solution and brine, dried (Na2 SO4) and evaporated in vacuo to a brown solid. This was recrystallized from methanol, to give the title compound (22.70 g, 59%) as a tan solid: 1 H NMR (CDCl3) delta 2.29 (s, 3H, CH3), 5.20 (s, 2 H, PhCH2), 6.06 (d, J=7.6 Hz, pyridinone-5-H), 7.32-7.43 (m, 5 H, Ph), 7.67 (br s, 1 H, CbzNH), 8.03 (br d, pyridinone-4-H). |
| 56% | With diphenylphosphoranyl azide; triethylamine; benzyl alcohol; In 1,4-dioxane; methanol; hexane; | 1. 3-Benzyloxycarbonylamino-6-methyl-2-pyridinone Diphenylphosphoryl azide (11.9 mL, 55 mmol) was added to a solution of <strong>[38116-61-9]2-hydroxy-6-methylpyridine-3-carboxylic acid</strong> (7.65 g, 50 mmol) and triethylamine (7.7 mL, 55 mmol) in dry dioxane (100 mL) and the resulting solution was heated to reflux. After 16 h additional triethylamine (7.7 mL, 55 mmol) and benzyl alcohol (5.7 mL, 50 mmol) were added and the solution was refluxed for a further 24 h. The reaction mixture was concentrated in vacuo and the residue was partitioned between methylene chloride (200 mL) and brine (100 mL), and acidified to pH 1 with 10% HCl. The organic layer was washed with saturated NaHCO3 (2*100 mL), brine (100 mL), dried over Na2SO4, and filtered. After evaporating the solvent in vacuo, methanol (100 mL) and hexane (20 mL) were added to the residue, the solid was collected, washed with methanol (50 mL) and dried to give the title compound as a white solid (7.2 g, 56%). 1H NMR (300 MHz, CDCl3) delta 12.82 (s, 1H), 8.06 (d, J=7.0 Hz, 1H), 7.69 (s, 1H), 7.42 (m, 5H), 6.09 (d, J=7.5 Hz, 1H), 5.22 (s, 2H), 2.32 (s, 3H). |
| 55% | With diphenyl-phosphinic acid; triethylamine; benzyl alcohol; In 1,4-dioxane; methanol; chloroform; ethyl acetate; | Step A 3-Benzyloxycarbonylamino-6-methyl-2-pyridinone DPPA (35.6 ml, 165 mmol) was added to a stirred solution of <strong>[38116-61-9]2-hydroxy-6-methylpyridine-3-carboxylic acid</strong> (22.97 g, 150 mmol) and triethylamine (23.0 ml, 165 mmol) in dry dioxane (300 ml) and the resulting solution was heated to reflux. After 16 h more triethylamine (23.0 ml, 165 mmol) and benzyl alcohol (17.1 ml, 150 mmol) were added and the solution was refluxed for a further 24 h. The reaction was concentrated in vacuo to remove most of the volatiles. The residue was partitioned between methylene chloride and brine, acidified to pH 1 with 1M HCl. The organic layer was washed with sodium hydrogen carbonate solution and brine, dried (MgSO4) and evaporated in vacuo. The crude product was purified by flash column chromatography (ethyl acetate/hexanes gradient 70-80% ethyl acetate, followed by 5% methanol/chloroform). The resulting solid was recrystallized from methanol, to give the title compound (21.15 g, 55%): 1 H NMR (CDCl3) delta 2.29 (s, 3H, CH3), 5.20 (s, 2H, PhCH2), 6.06 (d, J=7.6 Hz, pyridinone-5-H), 7.32-7.43 (m, 5H, Ph), 7.67 (br s, 1H, CbzNH), 8.03 (br d, pyridinone-4-H). |