Structure of 39974-94-2
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CAS No. : | 39974-94-2 |
Formula : | C11H11NO2 |
M.W : | 189.21 |
SMILES Code : | O=CC1=CN(C)C2=C1C=C(OC)C=C2 |
MDL No. : | MFCD01578324 |
InChI Key : | OFNAEHQJIMREFJ-UHFFFAOYSA-N |
Pubchem ID : | 925973 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 14 |
Num. arom. heavy atoms | 9 |
Fraction Csp3 | 0.18 |
Num. rotatable bonds | 2 |
Num. H-bond acceptors | 2.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 55.08 |
TPSA ? Topological Polar Surface Area: Calculated from |
31.23 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
2.02 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.43 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
2.0 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.86 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.07 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.68 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.26 |
Solubility | 1.05 mg/ml ; 0.00552 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.69 |
Solubility | 3.85 mg/ml ; 0.0204 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.92 |
Solubility | 0.225 mg/ml ; 0.00119 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.44 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.39 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
99% | With sodium hydrogencarbonate; In N,N-dimethyl-formamide; mineral oil; | a. 5-Methoxy-1-methylindole-3-carboxaldehyde (43) 5-Methoxyindole-3-carboxaldehyde (300 mg, 1.71 mmol) was added in portions over 5 min to a suspension of sodium hydride (82 mg, 2.05 mmol, 60% dispersion in mineral oil) in DMF (8 mL) stirring under argon. The mixture was stirred for 30 min, methyl iodide (0.13 mL, 2.05 mmol) was added and the mixture was stirred for 1 h. Sodium bicarbonate (10%, 40 mL) was added and the mixture was extracted with EtOAc (4*). The combined organic layers were washed with sodium bicarbonate (10%, 2*) and saturated NaCl, dried (MgSO4), filtered and evaporated. Column chromatography of the crude product (50:50 EtOAc:hexanes) afforded 43 (320 mg, 99%) as a light yellow solid; Rf=0.35 (50:50 EtOAc:hexanes); mp=130-132 C.; lit mp=132-133 C.53; 1H NMR (CDCl3): delta 9.95 (s, 1H), 7.79 (d, 1H, J=2.4 Hz), 7.62 (s, 1H), 7.25 (d, J=8.8 Hz), 6.96 (dd, 1H, J=2.4 and 8.9 Hz), 3.90 (s, 3H), 3.85 (s, 3H). |
A solution of 5-methoxyindole-3-carboxaldehyde (80 g) in dimethylformamide (1 L) under nitrogen was treated portion-wise with sodium hydride (20.1 g, 60% dispersion in mineral oil) over 15 minutes. After stirring at ambient temperature for 30 minutes the mixture was treated dropwise with methyl iodide (31.3 mL) over 10 minutes and stirring was then continued for a further 2 hours. The reaction mixture was poured cautiously into water then extracted with ethyl acetate. The organic phase was washed with water, then dried over sodium sulfate and then evaporated. The residue was triturated with pentane to give the title compound (76 g) as a pale brown solid, m.p. 133-134 C. 1H NMR [(CD3)2SO]: delta 9.86 (1H, s); 8.20 (1H, s); 7.60 (1H, d, J=2.6 Hz); 7.50 (1H, d, J=8.9 Hz); 6.96 (1H, dd, J=8.9 and 2.6 Hz); 3.86 and 3.80 (6H, s). | ||
General procedure: Compounds 7-9 were synthesized from the corresponding compounds 4-6. A solution of compounds 4-6 (60 mmol) in THF (30 mL) were added dropwise to a suspension of NaH (3.60 g, 60% dispersion in mineral oil, 150 mmol) in THF (30 mL) at 0 C. After stirring for 15 min, the heterogeneous mixture was treated with iodomethane (5.04 mL, 79.2 mmol) at room temperature for 1 h. Then the reaction mixture was cooled to 0 C, quenched with saturated NH4Cl (60 mL), and extracted with ether (3 * 50 mL). The organic layers were combined, washed with brine, dried over anhydrous Na2SO4 and concentrated in vacuo to give 1-Methyl-1H-indole-3-carboxaldehyde (7-9), a light brown solid. The crude 7-9 were used in the next step without any further purification. |
1.03 g | 5-methoxy-indole 22 (1.78 g, 9.40 mmol) was added gradually and under dry argon to a suspension of NaH (0.564 g of a 60% dispersion, 14.11 mmol) in dry DMF (4 mL). The suspension was stirred at room temperature for 10 min and cooled to 0 C, and MeI (0.81 g, 5.71 mmol) was added over 5 min. The solution was then heated at 40 C for 30 min, cooled, poured into cold water. The mixture was extracted with EtOAc (2× 150 mL), dried and evaporated. The residue was used without purification (1.03 g, 95%). 1H NMR (300 MHz, DMSO-d6): delta (ppm) 9.72 (s, 1H), 8.45 (s, 1H), 7.82 (d, J = 9.1 Hz, 1H), 7.37 (d, J = 9.1 Hz, 1H), 3.93 (s, 3H), 3.91 (s, 3H); MS (ESI) m/z: 190.1 [M+H]+. | |
To a suspension of NaH (8.9 g, 0.223 mol) in DMF (300 mL) was cooled in an ice-bath. To this, a solution of the starting amine (30 g, 0.171 mol) in DMF (150 mL) was added dropwise. The reaction mixture was stirred at rt for 60 minutes. Then iodomethane (31.5 g, 0.223 mol) was added. The reaction mixture was stirred at rt for 1 hour. Then the mixture was poured onto 10% aqueous solution of NaHCO3, extracted with EA. The combined organicphases were washed with 10% aqueous solution of NaHCO3, brine and dried. The solution was concentrated to get crude product, which was triturated from EAHex to afford product as a light-yellow solid (29.5 g, 91.2%) | ||
With sodium hydride; In tetrahydrofuran; at 0 - 20℃; for 24h; | General procedure: The relevant indole-3-carboxaldehyde (2a-c, 10 mmol) in THF(25 mL) was added dropwise to a stirred solution of NaH (25 mmol)in THF (25 mL) at 0 C and CH3I (13.2 mmol) was added after 15 minstirring. The reaction mixturewas moved to room temperature andstirred for further 24 h. Then the solvent was removed in vacuumand the residue was extracted by ethyl acetate. The organic layerwas washed with brine, dried over anhydrous sodium sulfate,filtered and concentrated in vacuum. Recrystallization affordedcompound 3a-c with yields of 93.4-97.5%. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
73% | With nitric acid; acetic acid; | To a solution of 23 (1.02 g, 5.39 mmol) dissolved in AcOH (88.7 mL) was added a mixture of concentrated HNO3 (3.2 mL in 18 mL AcOH) dropwise at 0 C over 1 h. After addition, the mixture was stirred at room temperature for 2 h, added to crushed ice (75 g), filtered, washed with H2O and dried to give 24 (0.90 g, 70%) as a pale yellow solid. 1H NMR (300 MHz, DMSO-d6): delta (ppm) 9.72 (s, 1H), 8.45 (s,1H), 7.82 (d, J = 9.1 Hz, 1H), 7.37 (d, J = 9.1 Hz, 1H), 3.93 (s, 3H), 3.91 (s, 3H); MS (ESI) m/z: 235.0 [M+H]+. |
With nitric acid; acetic acid; at 10 - 20℃; for 16h; | To a solution of the starting aldehyde (29.5 g, 156 mmol, 1 eq.) 5-methoxy-1-methyl-1H- indole-3-carbaldehyde in acetic acid (300 mL), cooled to 10C. To this, a mixture of nitric acid(4.6 mL) in acetic acid (20 mL) was added. The reaction mixture was then stirred at rt for 16 h. A yellow suspension was obtained which was poured on to an ice-water mixture and the crystals obtained were filtered off and dried. Crude product was triturated from EAHex to afford product as a yellow solid (30.0 g, 82.1%) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
STR25 A mixture composed of the alcohol obtained in the stage (388 mg, 1 mmol), triethylsilane (0.18 ml, 1.1 mmol) and trifluoroacetic acid (2 ml) is stirred at room temperature for 20 hours, and evaporated to dryness. 5 ml of water and 5 ml of sulfuric acid (d=1.86) are added to the residue obtained, and the mixture is heated to 60 C. for 4 hours with stirring. After 15 hours at room temperature, 50 ml of water are added, and the mixture is alkalinized with concentrated ammonia solution and extracted with methylene chloride. Evaporation of the solvent yields a residue which crystallizes and recrystallizes in ethyl acetate, to give 170 mg (55%) of yellow microcrystals, m.p. 206 C. The compound thereby obtained is identical to that described previously (m.p., analysis, NMR). 1 H NMR (CDCl3) delta=3.07 (s,3H,CH3 -5), 3.99+4.13 (2s,2*3H,OCH3 +NCH3), 7.28-7.38 (m, 2H, H-7+H-8), 7.72 (q,1H,H-10,J10-8 =2.5Hz,J10-7 =0.7Hz) 7.83 (q,1H,H-4,J4-3 =6.1Hz,J4-11 =1Hz), 8.21 (d,1H,H-3), 8.90 (d,1H,H-11). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
74% | With piperidine; In ethanol; at 70℃; for 4h; | N-methyl-2-oxindole-5-sulfonamide (36 mg, 0.16 mmol) and <strong>[39974-94-2]5-methoxy-1-methyl-1H-indole-3-carbaldehyde</strong> (33 mg, 0.18 mmol) were suspended in absolute ethanol (0.64 mL) and piperidine (4.8 mL, 0.05 mmol) was added. Mixture was heated to 70 C for 4 h and then cooled to ambient temperature. Product precipitated and was filtered out and dried in vacuum to yield 47 mg of product (74%) as yellow solid (d.r 20:1 (Z/E)). 1H NMR (400 MHz, DMSO-d6) delta 10.95 (s, 1H), 9.45 (s, 1H), 8.31 (d, J 2.9 Hz, 2H), 7.83 (d, J 2.4 Hz, 1H), 7.56 (dd, J 8.2, 1.8 Hz, 1H), 7.50 (d, J 8.8 Hz, 1H), 7.17 (q, J 5.1 Hz, 1H), 7.00 (d, J 8.1 Hz, 1H), 6.95 (dd, J 8.9, 2.4 Hz, 1H), 3.92 (s, 3H), 3.90 (s, 3H), 2.44 (d, J 5.0 Hz, 3H). HRMS (ESI): calcd. for [MH] (C20H20N3O4S) requires m/z 398.1169, found 398.1165; [MNa] 420.0988, found 420.0988. |
74% | With piperidine; In ethanol; at 70℃; for 4h; | [0112] N-methyl-2-oxindole-5-sulfonamide (36 mg, 0.16 mmol) and <strong>[39974-94-2]5-methoxy-1-methyl-1H-indole-3-carbaldehyde</strong> (33 mg, 0.18 mmol) were suspended in absolute ethanol (0.64 ml) and piperidine (4.8 muL, 0.05 mmol) was added. Mixture was heated to 70C for 4 hours and then cooled to ambient temperature. Product precipitated and was filtered out and dried in vacuum to yield 47 mg of product (74%) as yellow solid [d.t 20:1 (Z/E)]; H1 NMR (400 MHz, DMSO-d6) delta 10.95(s, 1H), 9.45(s, 1H), 8.31(d, J=2.9 Hz, 2H), 7.83(d, J=2.4 Hz, 1H), 7.56(dd, J=8.2, 1.8 Hz, 1H), 7.50(d, J=8.8 Hz, 1H), 7.17(q, J=5.1 Hz, 1H), 7.00(d, J=8.1 Hz, 1H), 6.95(dd, J=8.9, 2.4 Hz, 1H), 3.92(s, 3H), 3.90(s, 3H), 2.44(d, J=5.0 Hz, 3H); |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
86% | With piperidine; In ethanol; at 70℃; for 4h; | N,N-dimethyl-2-oxindole-5-sulfonamide (48 mg, 0.20 mmol) and <strong>[39974-94-2]5-methoxy-1-methyl-1H-indole-3-carbaldehyde</strong> (42 mg, 0.22 mmol) were suspended in absolute ethanol (0.8 mL) and piperidine (6 mL, 0.060 mmol) was added. Mixture was heated to 70 C for 4 h and then cooled to ambient temperature. Product precipitated and was filtered out and dried in vacuum to yield 71 mg of product (86%) as yellow solid (d.r 20:1 (Z/E)). 1H NMR (400 MHz, DMSO-d6) delta 11.01 (s, 1H), 9.49 (s, 1H), 8.39 (s, 1H), 8.32 (d, J 1.8 Hz, 1H), 7.90 (d, J 2.4 Hz, 1H), 7.60e7.46 (m, 2H), 7.05 (d, J 8.2 Hz, 1H), 6.98 (dd, J 8.8, 2.4 Hz, 1H), 3.94 (s, 3H), 3.91 (s, 3H), 2.65 (s, 6H). HRMS (ESI): calcd. for [MH] (C21H22N3O4S) requires m/z 412.1326, found 412.1322; [MNa] 434.1145, found 434.1141. |
86% | With piperidine; In ethanol; at 70℃; for 4h; | [0110] N,N-dimethyl-2-oxindole-5-sulfonamide (48 mg, 0.20 mmol) and <strong>[39974-94-2]5-methoxy-1-methyl-1H-indole-3-carbaldehyde</strong> (42 mg, 0.22 mmol) were suspended in absolute ethanol (0.8 mL) and piperidine (6 muL, 0.060 mmol) was added. Mixture was heated to 70C for 4 hours and then cooled to ambient temperature. Product precipitated and was filtered out and dried in vacuum to yield 71 mg of product (86%) as yellow solid (d.r=20:1 (Z/E)); H1 NMR (400 MHz, DMSO-d6) delta 11.01(s, 1H), 9.49(s, 1H), 8.39(s, 1H), 8.32(d, J=1.8 Hz, 1H), 7.90(d, J=2.4 Hz, 1H), 7.60-7.46(m, 2H), 7.05(d, J=8.2 Hz, 1H), 6.98(dd, J=8.8, 2.4 Hz, 1H), 3.94(s, 3H), 3.91(s, 3H), 2.65(s, 6H); |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With hydroxylamine hydrochloride; In DMF (N,N-dimethyl-formamide); for 1h;Heating / reflux; | <strong>[39974-94-2]5-Methoxy-1-methyl-1H-indole-3-carbaldehyde</strong> [76 g, Reference Example 2(a)] and hydroxylamine hydrochloride (55.9 g) were stirred together in dimethylformamide (900 mL) under reflux for 1 hour. The mixture was allowed to cool, then poured into water and then extracted with ethyl acetate. The combined extracts were washed with water then evaporated to give the title compound (53 g) as a pale brown solid, m.p. 100-104 C. 1H NMR [(CD3)2SO]: delta 8.17 (1H, s); 7.54 (1H, d, J=9.0 Hz); 7.09 (1H, d, J=2.4 Hz); 6.97 (1H, dd, J=9.0 and 2.4 Hz); 3.82 and 3.84 (6H, s). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
97% | To a solution of 5-Methoxy-1 -methyl- 1H-indole-3-carbaldehyde (4.5g, 23.8 mmol, in 150 ml DCM) was added BBr3 solution (2 M in DCM, 60 ml, 5 eq) at -10 ºC with stirring for 5 min. The cooling bath was removed and the reaction mixture was slowly warmed up to r.t. The reaction was monitored by TLC (2% MeOH in DCM) and LCMS (after 3.5 h, no starting material remained). The reaction mixture was then cooled to -10 ºC, and 16 ml of MeOH were slowly added. The pH of mixture was adjusted to 8 by adding sat. NaHCO3 and/or 4 N NaOH. The organic solvents were removed under reduced pressure and the remaining aqueous mixture was extracted with ethyl acetate (30 mlx5). The organic layers were combined, washed with brine (10mIx1 ), dried over Mg2SO4, filtered and dried under reduced pressure to give the title compound as 4.06 g purple powder (yield: 97%) EPO <DP n="27"/>that was used without further purification. LCMS (2-85 % ACN/H2O in 7 min): 176.1 (40%). Rf 0.11 (2% MeOH in DCM). |
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