Structure of 65370-42-5
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CAS No. : | 65370-42-5 |
Formula : | C5H3ClN2O2 |
M.W : | 158.54 |
SMILES Code : | ClC1=CC(=NC=C1)[N+](=O)[O-] |
MDL No. : | MFCD04114167 |
InChI Key : | YPKBJRKFGYVURL-UHFFFAOYSA-N |
Pubchem ID : | 2762847 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H332-H335 |
Precautionary Statements: | P261-P280-P305+P351+P338 |
Num. heavy atoms | 10 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 1 |
Num. H-bond acceptors | 3.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 38.07 |
TPSA ? Topological Polar Surface Area: Calculated from |
58.71 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.11 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.34 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.64 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.68 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
-0.09 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
0.94 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.05 |
Solubility | 1.43 mg/ml ; 0.00901 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.17 |
Solubility | 1.06 mg/ml ; 0.00669 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.01 |
Solubility | 1.55 mg/ml ; 0.00979 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.32 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
2.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.02 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With caesium carbonate; In N,N-dimethyl-formamide; at 20℃; | Step 1: Ethyl 2-(6-(4-chloropyridin-2-yloxy)- 1 -hydroxy-4-methyl- 1 ,3- dihydrobenzo[c] [1,2] oxaborol-3-yl) acetate[0523] To a mixture of ethyl 2-(l ,6-dihydroxy-4-methyl-l ,3- dihydrobenzo[c][l,2]oxaborol-3-yl)acetate (2 g, 8 mmol, 1 eq.) and 4-chloro-2- nitropyridine (2.53 g, 16 mmol, 2 eq.) in 50 ml DMF was added cesium carbonate (7.8 g, 24 mmol, 3 eq.). The reaction was stirred at room temperature overnight. It was then quenched by water, extracted with EtOAc, washed with brine, dried over Na2SO4, and concentrated under reduced pressure. The crude was purified by column chromatography on silica gel (DCM/methanol = 19:1 to 4:1) to give desired product as light yellow oil. MS (ESI) m/z = 721 [2M-H]+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With palladium diacetate; caesium carbonate; 4,5-bis(diphenylphosphino)-9,9-dimethylxanthene; In 1,4-dioxane; at 120℃; for 4h;Inert atmosphere; | 1 ,4-Dioxane (20 mL) was degassed for 10 minutes with argon. Then palladium(ll)-acetate (0.017 g, 0.076 mmol) and 4,5-bis(diphenylphosphino)-9,9-dimethylxanthene (0.131 g, 0.227 mmol) were added. The suspension was then heated at 110C for 2 minutes. Then the title compound from Preparative Example 21 (0.150 g, 0.757 mmol), <strong>[65370-42-5]4-chloro-2-nitropyridine</strong> (0.168 g, 1.059 mmol) and cesium carbonate (0.740 g, 2.270 mmol) were added and the stirring was continued at 120C for 4 hours. Water was added and the solid was filtered. The solid was washed with water and dried to afford the title compound (0.246 g, quant.).MS (ESI); m/z = 320.81 [M+H]+ |
100% | With palladium diacetate; caesium carbonate; 4,5-bis(diphenylphosphino)-9,9-dimethylxanthene; In 1,4-dioxane; at 120℃; for 4h;Inert atmosphere; | (1027) Step A (1028) 1,4-Dioxane (20 mL) was degassed for 10 minutes with argon. Then palladium(II)-acetate (0.017 g, 0.076 mmol) and 4,5-bis(diphenylphosphino)-9,9-dimethylxanthene (0.131 g, 0.227 mmol) were added. The suspension was then heated at 110 C. for 2 minutes. Then the title compound from Preparative Example 21 (0.150 g, 0.757 mmol), <strong>[65370-42-5]4-chloro-2-nitropyridine</strong> (0.168 g, 1.059 mmol) and cesium carbonate (0.740 g, 2.270 mmol) were added and the stirring was continued at 120 C. for 4 hours. Water was added and the solid was filtered. The solid was washed with water and dried to afford the title compound (0.246 g, quant.). (1029) MS (ESI); m/z=320.81 [M+H]+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
35% | With sodium hydrogen sulfide; In N,N-dimethyl-formamide; at 50℃; | 4-chloro-2-nitro-pyridine (5000 mg, 31.54 mmol) and NaHS (2122 mg, 37.84 mmol) were dissolvent in DMF (50 mL). Then it was stirred at 50C overnight. Aq NaOH (50 mL) was added to the mixture. The mixture was extracted with EtOAc (10 mL X 3). The aqueous was acidified with aq NaHS04 to PH ~ 4. Then it was extracted with EtOAc (15 mL X 3). The combined organic layers were washed with brine, dried over Na2S04 and concentrated in vacuo to afford crude product, which was purified by washed with EtOAc (10 mL) to afford 2-nitropyridine-4-thio 1(1700 mg, 35% yield). ESI-MS m/z calcd for [C5H4N202S]" [M-H]~: 156.0; found: 155.0. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
75% | Under nitrogen protection, 550 mL of dioxane, 2-nitro-4-chloropyridine (15.8 g, 0.10 mol) and pinacol borate (25.4 g, 0.10 mol) were sequentially added to the reaction flask. After stirring potassium acetate (14.7 g, 0.15 mol), Finally, the catalyst PdCl2dppf (0.74 g, 0.001 mol) was added, and the temperature was slowly raised to 80-90 C, and the reaction was stirred for 2-3 h. After the completion of the GC reaction, the reaction was stopped by cooling, and the reaction solution was filtered through celite to obtain a dark-black reaction solution. After charging at 1 atm of hydrogen, the mixture was reacted at room temperature overnight. After the reaction was completed, the activated carbon was decolorized, and the filtrate was distilled under reduced pressure until no liquid was poured. /Heptane mixed solvent is cooled and beaten for half an hour, filtered to obtain a light gray crude product, heated again with ethanol, and then cooled down, and the filter cake is rinsed with -20 C anhydrous ethanol, and dried to obtain 16.5 g of an off-white solid. 75%, HPLC purity 99.1%, |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
50% | With N-ethyl-N,N-diisopropylamine; In 1-methyl-pyrrolidin-2-one; at 150℃; for 24h; | Compound 8 (4g, 0.03mol) was added to a 100mL eggplant-shaped bottle, NMP 30mL was added, stirred, and added sequentially Diisopropylethylamine (10 g, 0.08 mol), compound 9 (4.8 g, 0.03 mol), then reacted at 150 C for 24 h, using thin layer chromatography(TLC) followed the reaction. After 24 h, TLC showed the end of the reaction. Part of the solvent was evaporated under reduced pressure. After suction filtration, drying and recrystallization, 3.20 g of a gray solid compound 10 was obtained in a yield of 50%. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
1 g | With caesium carbonate; In N,N-dimethyl-formamide; at 60℃; for 17h; | To a suspension of compound B5 (4.00 g, 25.2 mmol) and Cs2C03 (16.4 g, 50.5 mmol) in DMF (50 mL) was added 3-cyanophenol (3.16 g, 26.5 mmol), the mixture was stirred at 60C for 17 hours to give a brown suspension. Crude LCMS (RT: 1.384 min) showed the reaction was completed. The mixture was poured into water (400 mL), a lot of white solid appeared, filtered, the filter cake was washed with water (30 mL x 3) to give the crude product. The crude product was purified by Combi flash to give 1.00 g of compound B6 as a yellow powder. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
48.07% | With tris-(dibenzylideneacetone)dipalladium(0); caesium carbonate; 4,5-bis(diphenylphosphino)-9,9-dimethylxanthene; In 1,4-dioxane; at 20 - 120℃;Inert atmosphere; | To a stirred solution of 5-amino-3-(5-chloro-2-fluorophenyl)-6- isopropylpyridin-2(lH)-one (0.580 g, 2.06 mmol, 1.0 eq) and <strong>[65370-42-5]4-chloro-2-nitropyridine</strong> (0.394 g, 2.479 mmol, 1.2 eq) in dioxane (20.0 mL) was added CS2CO3 (2.02 g, 6.198 mmol, 3.0 eq) at rt. The resulting mixture was purged with nitrogen for 10 min followed by addition of Pd2(dba)3 (0.227 g, 0.247 mmol, 0.12 eq) and xatphos (0.180 g, 0.309 mmol, 0.15 eq), again purged with nitrogen for 10 min. The reaction mixture was heated at l20C for overnight. The progress of reaction was monitored by LCMS. The reaction mixture was diluted with water (50 mL), extracted with EtOAc (2 x 100 mL). The combined organic layers were washed with water (50 mL), with brine (50 mL), dried over Na2S04, concentrated and purified by combi flash chromatography [silica gel 100-200 mesh: elution 0-50 % EtOAc in Hexane] to afford the desired compound (400 mg, 48.07%) as brown solid. LCMS: (M+l)+ 403.1 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
73.4% | With sodium hydrogencarbonate; In dimethyl sulfoxide; at 70℃; for 16h; | A mixture of Intermediate 1 (11.0 g, 69.3 mmol, 1 eq), Intermediate 2 (21.7 g, 104.0 mmol, 1.5 eq, HC1) and NaHCCb (14.5 g, 173.4 mmol, 6.75 mL, 2.5 eq) in DMSO (100.0 mL) was stirred at 70C for 16 h. TLC (Petroleum ether/Ethyl acetat = 1/1, Rf = 0.24) indicated the starting material was consumed completely. The reaction mixtures were combined, and then diluted with EhO (50.0 mL) and extracted with EtOAc (20.0 mL x 3). The combined organic layers were washed with LEO (50.0 mL x 5) and brine (20.0 mL ), dried over Na2S04, filtered and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (SiCh, Petroleum ether/Ethyl acetate = 20/1 to 1/1). Intermediate 3 (15.0 g, 50.9 mmol, 73.4% yield) was obtained as a yellow solid. NMR : MeOD Varian_Y_400MHz 8.07 (d, J = 5.7 Hz, 1H), 7.19 (d, J = 2.2 Hz, 1H), 6.66 (dd, J = 2.2, 5.7 Hz, 1H), 4.60 (br s, 1H), 4.37 (t, J = 8.2 Hz, 2H), 3.93 (dd, J = 5.6, 8.5 Hz, 2H), 1.45 (s, 9H) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
78.6% | With triethylamine; In ethanol; at 75℃; for 8h; | To a solution of Intermediate 1 (5.00 g, 31.5 mmol, 1 eq), Intermediate 2 (12.6 g, 63.0 mmol, 2 eq) in EtOH (30.0 mL) was added TEA (6.38 g, 63.0 mmol, 8.78 mL, 2 eq). The mixture was stirred at 75C for 8 h. TLC (Petroleum ether/Ethyl acetate = 3/1, Rf = 0.22) showed the reaction was completed. The reaction mixture was concentrated under reduced pressure to remove EtOH. The residue was diluted with 0 (30.0 mL) and extracted with EtOAc (30.0 mL x 3). The combined organic layers were washed with brine (50.0 mL), dried over Na2S04, filtered and concentrated under reduced pressure to give a residue. The residue was purified by column chromatography (S1O2, Petroleum ether/Ethyl acetate = 50/1 to 0/1). Give Intermediate 3 (8.00 g, 24.8 mmol, 78.6% yield) as a yellow solid. NMR : CDCI3 400 MHz 8.20 (d, J= 5.9 Hz, 1H), 7.58 (d, J= 2.4 Hz, 1H), 6.94 (br d, J = 3.5 Hz, 1H), 4.57 (br s, 1H), 3.86 (br d, J= 12.3 Hz, 1H), 3.57 - 3.74 (m, 2H), 3.14 - 3.33 (m, 2H), 2.02 - 1.98 (m, 1H), 1.77 - 1.90 (m, 1H), 1.64 - 1.71 (m, 1H), 1.52 - 1.61(m, 1H), 1.44 (br s, 9H) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70% | General procedure: An oven dried Schlenk flask was evacuatedand back filled with argon gas. The procedure was repeated3e4 times and the flask was cooled to room temperature. Thencompound 15 (0.5 g, 1.9 mmol), 4-fluoro-3-nitro-aniline (0.415 10 g,2.1 mmol), palladium(II)-acetate (0.045 g, 0.225 mmol), 4,5-bis(diphenylphosphino)-9,9- dimethylxanthene (0.35 g,0.45 mmol), cesium carbonate (1.24 g, 3.8 mmol) and 1,4-dioxane(25 mL) were added and the reaction mixture was heated at110 C in a sand-bath for 6 h. The cooled reaction mixture wasdiluted with ethyl acetate (350 mL), acetone (150 mL) and MeOH(70 mL). After the addition of brine (150 mL), the organic phasewasseparated; dried over Na2SO4, filtered and the solvents wereevaporated under reduced pressure. The residue was treated withMeOH (30 mL), sonicated for 10 min and the precipitate wascollected by filtration. The solid material was washed with MeOH(10 mL) and air dried to afford the title compound 40 (0.558 g, 86%yield) as a reddish solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
20% | With caesium carbonate; In N,N-dimethyl-formamide; at 20℃; for 5h; | To a solution of <strong>[65370-42-5]4-chloro-2-nitropyridine</strong> (CAS [65370-42-5], 0.930 g, 5.87 mmol) in DMF (13 mL) were added 4-(trifluoromethoxy)phenol (CAS [828-27-3], 0.760 mL, 5.87 mmol) and CS2CO3 (5.73 g, 17.6 mmol). The reaction mixture was stirred at room temperature for 5 h and then diluted with CH2CI2 and water. The organic layer was washed with brine, dried over Na2SC>4, filtered and concentrated to dryness. The crude residue was purified by flash chromatography over silica gel (cyclohexane/EtOAc from 100:0 to 50:50) to afford intermediate J1 as a yellow oil (0.344 g, 20%). |
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