Structure of 885267-36-7
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 885267-36-7 |
Formula : | C6H3BrFNO |
M.W : | 204.00 |
SMILES Code : | O=CC1=NC(Br)=CC=C1F |
MDL No. : | MFCD07781224 |
InChI Key : | BFBRCFKSFRYJGE-UHFFFAOYSA-N |
Pubchem ID : | 16414238 |
GHS Pictogram: |
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Signal Word: | Warning |
Hazard Statements: | H302 |
Precautionary Statements: | P280-P305+P351+P338 |
Num. heavy atoms | 10 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 1 |
Num. H-bond acceptors | 3.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 37.28 |
TPSA ? Topological Polar Surface Area: Calculated from |
29.96 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.28 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.77 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
2.22 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
1.0 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.61 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.77 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.6 |
Solubility | 0.515 mg/ml ; 0.00252 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.02 |
Solubility | 1.96 mg/ml ; 0.00961 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-3.11 |
Solubility | 0.158 mg/ml ; 0.000776 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.29 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
2.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.8 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium phosphate;palladium diacetate; tricyclohexylphosphine; In water; toluene; at 100℃; for 22h;Inert atmosphere; Sonographic reaction; | R-5 (2.20 g, 10.78 mmol) is combined with R-8 (1.20 g, 14.02 mmol), tribasic potassium phosphate (8.01 g, 37.75 mmol) and tricyclohexylphosphine (0.30 g, 1.08 mmol) and diluted with toluene (40 ml) and water (2 ml). The palladium acetate is added (0.24 g, 1.08 mmol) and the mixture is sonicated for five minutes and then degassed with nitrogen. The reaction is warmed to 100C for 22 hours, cooled to ambient temperature and poured into water. The product is extracted into ethyl acetate and the organics are dried with MgS04, filtered and concentrated. The residue is purified by silica gel flash column chromatography with 5-40% ethyl acetate in heptane as the eluent to afford R-9. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With Oxone; In water; N,N-dimethyl-formamide; at 20℃; for 0.5h; | To a solution of 1-1 (500 mg, 1.94 mmol) in DMF (20 mL) is added R-5 (396 mg, 1.94 mmol) followed by a solution of oxone (1.19 g, 1.94 mmol) in water (6 ml) at room temperature. The solution is stirred for 30 minutes and poured into water (75 ml) and saturated aqueous sodium thiosulfate (75 ml). The product is extracted into ethyl acetate and the organics are dried with MgS04, filtered and concentrated. The residue is purified by silica gel flash column chromatography with 10% MeOH in CH2CI2 as the eluent to afford R-6. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Example 73A (2R)-2-[(6-bromo-3-fluoropyridin-2-yl)methyl]amino}-3-methylbutan-1-ol <strong>[885267-36-7]6-bromo-3-fluoropicolinaldehyde</strong> (4.0 g, 19.61 mmol) and (R)-2-amino-3-methylbutan-1-ol (2.281 mL, 20.59 mmol) were dissolved in methanol (100 mL) and stirred at ambient temperature for 1 hour and 15 minutes. Sodium borohydride (0.742 g, 19.61 mmol) was added and the mixture was stirred for another 1 hour and 30 minutes. The volume of the reaction mixture was reduced, and the mixture was quenched with 200 mL 1.0 N NaOH, and extracted with 200 mL dichloromethane (2*). The organic phase was extracted with 1.0 N HCl and partitioned. The aqueous phase was separated, neutralized with 3.0 N NaOH, extracted with EtOAc, organic phase separated and washed with brine. The organic phase was dried over Na2SO4, filtered, and concentrated to obtain the title compound as an orange solid. MS (ESI+) m/z 291.0 (M+H); 1H NMR (300 MHz, DMSO-d6) delta 7.69 (t, J=8.8, 1H), 7.60 (dd, J=8.6, 3.7, 1H), 4.42 (t, J=5.2, 1H), 3.92-3.75 (m, 2H), 3.43 (dt, J=10.7, 4.8, 1H), 2.34-2.24 (m, 1H), 2.08 (s, 1H), 1.87-1.71 (m, 1H), 0.83 (dd, J=8.5, 6.9, 6H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
69.5% | tetrakis(triphenylphosphine) palladium(0); at 80℃;Inert atmosphere; | Example 28A5-fluoro-6'-(trifluoromethyl)-2,3'-bipyridine-6-carbaldehydeNitrogen was bubbled through a mixture of 6-(trifluoromethyl)pyridin-3-ylboronic acid (3.74 g, 19.61 mmol), <strong>[885267-36-7]6-bromo-3-fluoropicolinaldehyde</strong> (4.0 g, 19.61 mmol), Pd(Ph3P)4 (0.340 g, 0.294 mmol) was added and nitrogen was bubbled for 10 minutes, and the reaction mixture was heated overnight at 80 C. EtOAc (300 mL) was added and the mixture was washed with water (300 mL) and brine (300 mL), dried over Na2SO4, filtered, and concentrated. The residue was chromatographed on a Grace Reveleris 80 g column, eluted with 0-40% EtOAc in Heptane (30 mL/min) to provide the title compound (3.681 g, 13.62 mmol, 69.5% yield). MS (ESI+) m/z 303.0 (M+H+MeOH); 1H NMR (300 MHz, DMSO-d6) delta 10.15 (s, 1H), 9.50 (d, J=2.0, 1H), 8.82-8.75 (m, 1H), 8.58 (dd, J=8.9, 3.7, 1H), 8.23-8.13 (m, 1H), 8.10 (d, J=8.3, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
79.3% | 3-fluoro-6-(thiophen-3-yl)picolinaldehyde was prepared using the general boronic acid coupling procedure for <strong>[885267-36-7]6-bromo-3-fluoropicolinaldehyde</strong> and thiophen-3-ylboronic acid (80.5 mg, 101.5 mg theoretical, 79.3%). LC-MS m/z 208.2 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
87% | To a stirred solution of <strong>[885267-36-7]6-bromo-3-fluoropicolinaldehyde</strong> (10.0 g, 49 mmol) in 200 mL of THF was added 18.0 mL of MeMgBr (3.0M in ether, 54 mmol) at -78C dropwise over a period of 35 min. The reaction was stirred at -78C for 3 hrs, then warmed up to 0 C and stirred at 0C for additional 1 hr. The mixture was quenched with 150 mL of saturated aq. NH4C1 at 0 C and extracted with three 200 mL portions of EtOAc. The combined organic extracts were concentrated; the residue was purified by flash chromatography (220 g of Si02: 0 to 30% EtOAc in hexane) to give compound 5B-1 (9.4 lg, 87%). LCMS (conditions A): tR = 1.91 min, m/e = 220 (M+H). | |
In tetrahydrofuran; diethyl ether; at -78 - 0℃; for 4.58333h; | Step 1 To a stirred solution of <strong>[885267-36-7]6-bromo-3-fluoropicolinaldehyde</strong> E-1 (10.0 g, 49.0 mmol) in 200 mL of THF was added 18.0 mL of MeMgBr (3.0 M in ether, 54.0 mmol) at -78C dropwise over a period of 35 min. The reaction was stirred at -78C for 3 hrs, then warmed to 0 C and stirred at 0C for additional 1 h. The mixture was quenched with 150 mL of saturated aq. NH4C1 at 0 C and extracted with three 200 mL portions of EtOAc. The combined organic extracts were concentrated; the residue was purified by flash chromatography (220 g of Si02: 0 to 30% EtOAc in hexane) to give compound E-2. MS for E-2: m/e = 220 and 222 (M+l). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With methylmagnesium bromide; ammonium chloride; In tetrahydrofuran; diethyl ether; water; | Step 1. 1-(6-Bromo-3-fluoropyridin-2-yl)ethanol To a solution of <strong>[885267-36-7]6-bromo-3-fluoro-2-formylpyridine</strong> (1.05 g, 5.15 mmol) in THF (15 mL) at -78 C. was added dropwise methylmagnesium bromide, 3 M solution in diethyl ether (2.5 mL). The reaction was allowed to gradually warm up to RT and stirred overnight. To this was added solid ammonium chloride (5 g) and water (0.5 mL). The slurry was dried over Na2SO4, filtered, and concentrated to give the title intermediate (1.13 g, 5.14 mmol). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With diethylamino-sulfur trifluoride; In dichloromethane; at -20 - 20℃; for 3h;Inert atmosphere; | To a 100 mL round-bottomed flask was added 6-bromo-3- fluoropicolinaldehyde (459.8 mg, 2.254 mmol) in CH2Cl2 (10 mL) to give a tan solution. After cooling to -20 C, DAST (0.596 mL, 4.51 mmol) was added dropwise under nitrogen. The mixture was gradually warmed up to rt. The mixture was stirred at rt for 3 h. TLC (3/1 hexane/EtOAc) showed complete conversion to a less polar spot. The reaction was slowly quenched by saturated NaHCO3 solution and diluted with ether. The layers were separated. The organic layer was washed with water, brine, dried and concentrated to 6-bromo-2-(difluoromethyl)-3-fluoropyridine (509 mg, 100%) as a tan solid: 1H NMR (400 MHz, Chloroform-d) delta 7.65 (ddt, J = 8.6, 3.5, 1.0 Hz, 1H), 7.46 (t, J = 8.7 Hz, 1H), 6.73 (t, J = 53.4 Hz, 1H); 19F NMR (376 MHz, Chloroform-d) delta -116.97, -127.89. |
100% | With diethylamino-sulfur trifluoride; In dichloromethane; at -20 - 20℃; for 3h;Inert atmosphere; | To a 100 mL round-bottomed flask was added 6-bromo-3- fluoropicolinaldehyde (459.8 mg, 2.254 mmol) in CH2CI2 (10 mL) to give a tan solution. After cooling to -20 C, DAST (0.596 mL, 4.51 mmol) was added dropwise under nitrogen. The mixture was gradually warmed up to rt. The mixture was stirred at rt for 3 h. TLC (3/1 hexane/EtOAc) showed complete conversion to a less polar spot. The reaction was slowly quenched by saturated NaHCC solution and diluted with ether. The layers were separated. The organic layer was washed with water, brine, dried and concentrated to 6-bromo-2-(difluoromethyl)-3-fluoropyridine (509 mg, 100%) as a tan solid: NMR (400 MHz, Chloroform-d) delta 7.65 (ddt, J = 8.6, 3.5, 1.0 Hz, 1H), 7.46 (t, J = 8.7 Hz, 1H), 6.73 (t, J |
With diethylamino-sulfur trifluoride; In dichloromethane; at 0 - 20℃; for 12.0833h; | A solution of <strong>[885267-36-7]6-bromo-3-fluoropicolinaldehyde</strong> (2 g, 9.80 mmol) in DCM (10mL) was cooled to 0 C. DAST (1.295 mL, 9.80 mmol) was added dropwise and themixture stirred for 5 mm at 0 C. The reaction mixture was warmed to room temperature and stirred for 12 h. The reaction mixture was diluted with DCM (50 mL) and washed with saturated sodium bicarbonate solution (20 mL), water (2 x 20 mL), brine (1 x 20 mL), dried over Na2SO4, filtered, and concentrated under reducedpressure to afford cmde 6-bromo-2-(difluoromethyl)-3-fluoropyridine (1.2 g, 5.31 mmol, 54% yield) as a light yellow solid which was carried forward without further purification. LCMS (ESI) m/e 225.9 [(M+H) , calcd for C6H4BrF3N 225.91; LC/MS retention time (Method Al): tR = 2.73 mm. |