Structure of 89380-77-8
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CAS No. : | 89380-77-8 |
Formula : | C6H5NO5S |
M.W : | 203.17 |
SMILES Code : | O=C(C1=C(O)C=C([N+]([O-])=O)S1)OC |
MDL No. : | MFCD09260843 |
InChI Key : | CJHDSFKNSOHWCK-UHFFFAOYSA-N |
Pubchem ID : | 54691283 |
GHS Pictogram: |
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Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 13 |
Num. arom. heavy atoms | 5 |
Fraction Csp3 | 0.17 |
Num. rotatable bonds | 3 |
Num. H-bond acceptors | 5.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 46.44 |
TPSA ? Topological Polar Surface Area: Calculated from |
120.59 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.31 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
2.15 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.15 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
-0.74 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
-0.15 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
0.74 |
Log S (ESOL):? ESOL: Topological method implemented from |
-2.54 |
Solubility | 0.585 mg/ml ; 0.00288 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-4.31 |
Solubility | 0.00985 mg/ml ; 0.0000485 mol/l |
Class? Solubility class: Log S scale |
Moderately soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-0.56 |
Solubility | 56.6 mg/ml ; 0.279 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.01 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
1.0 alert |
Brenk? Structural Alert: implemented from |
2.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.78 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
97% | With potassium carbonate; In N,N-dimethyl-formamide; at 20℃; for 18h; | Step A-Methyl 5-nitro-3-[(phenylmethyl)oxy]-2-thiophenecarboxylate To a solution of <strong>[89380-77-8]methyl 3-hydroxy-5-nitro-2-thiophenecarboxylate</strong>, which can be prepared according to the procedure in J. Chem. Research (M), 2001 1001-1004, (26.4 g, 130 mmol) in DMF (300 mL) was added K2CO3 (20.0 g, 145 mmol), followed by benzyl bromide (22.3 g, 130 mmol), and the reaction mixture was stirred at rt for 18 h. The solution was filtered to remove the solids, and the filtrate was poured slowly into 1 N HCl (600 mL). A yellow solid precipitated, and this solid was collected by vacuum filtration and was washed with water (3×300 mL) providing 37.0 g (97%) of the title compound. 1H NMR (400 MHz, DMSO-d6): delta 8.23 (s, IB), 7.48-7.28 (m, 5H), 5.37 (s, 2H), 3.79 (s, 3H). |
97% | With potassium carbonate; In N,N-dimethyl-formamide; at 20℃; for 18h; | To a solution of <strong>[89380-77-8]methyl 3-hydroxy-5-nitro-2-thiophenecarboxylate</strong>, which may be prepared according to the procedure in J. Chem. Research (M), 2001, 1001-1004, (26.4 g, 130 mmol) in DMF (300 mL) was added K2CO3 (20.0 g, 145 mmol), followed by benzyl bromide (22.3 g, 130 mmol), and the reaction mixture was stirred at rt for 18 h. The solution was filtered to remove the solids, and the filtrate was poured slowly into 1 N HCl (600 mL). A yellow solid precipitated, and this solid was collected by vacuum filtration and was washed with water (3×300 mL) providing 37.0 g (97%) of the title compound. 1H NMR (400 MHz, DMSO-d6): delta 8.23 (s, 1H), 7.48-7.28 (m, 5H), 5.37 (s, 2H), 3.79 (s, 3H). |
97% | To a solution of methyl 3-hydroxy~5-nitro-2-thiophenecarboxylate (26.4 g, 130 mmol) in Lambda/.W-dimethylformamide (300 ml_) was added potassium carbonate (20.0 g, 145 mmol), followed by benzyl bromide (22.3 g, 130 mmol), and the reaction mixture was stirred at room temperature for 18 h. The solution was filtered to remove the solids, and the filtrate was poured slowly into 1 N HCI (600 mL). A yellow solid precipitated, and this solid was collected by vacuum EPO <DP n="91"/>filtration and was washed with water (3 x 300 ml_) providing 37.0 g (97%) of the title compound. 1H NMR (400 MHz, DMSO-Cf6): delta 8.23 (s, 1 H), 7.48-7.28 (m, 5H), 5.37 (s, 2H), 3.79 (s, 3H). |
97% | With potassium carbonate; In N,N-dimethyl-formamide; at 20℃; for 18h; | intermediate 28: Methvi 5-{5~brorno-1 /^be?zi?iidazol-1-yl)-3-0 Step A - Methyl 5-nitro~3-{(phenylmethyJ)oxy]~2-thiophenecarboxylateTo a solution of <strong>[89380-77-8]methyl 3-hydroxy-5-nitro-2-thiophenecarboxylate</strong>, which can be prepared according to the procedure in J, Chem. Research (M), 2001 , 1001-1004, (28.4 g, 130 mmol) in DMF (300 ml) was added K2CO3 (20,0 g, 5 145 mrnof), followed by benzyl bromide (22.3 g, 130 rnmoi), and the reaction <n="121"/>mixture was stirred at ft for 18 h. The solution was filtered to remove the soiids, and the filtrate was poured slowly into 1 N HG (800 mL). A yellow solid precipitated, and this solid was collected by vacuum filtration and was washed with water (3 x 300 ml) providing 37.0 g (97%) of the title compound. 1H NMR (400 MHz, DMSO-alphafe): 5 8,23 (s, 1H)1 7.48-7.2S (m, 5H), 5.37 (s, 2H), 3.79 (S1 3H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
99% | With diethylazodicarboxylate; In dichloromethane; at 0 - 20℃; for 5h; | To a slurry of polymer-supported triphenylphosphine (179.0 g, 2.2 mmol/g, 393.8 mmol) in dichloromethane (1 L) was added 2-(trimethylsilyl)ethanol (56.0 ml_, 393.8 mmol) and <strong>[89380-77-8]methyl 3-hydroxy-5-nitro-2-thiophenecarboxylate</strong> (20.0 g, 98.4 mmol), which may be prepared in a manner analogous to the literature procedure (Barker, J.M.; Huddleston, P.R.; Wood, M. L.; Burkitt, S.A. Journal of Chemical Research (Miniprint)2QW , 1001-1022). The mixture was cooled to 0 C and diethylazodicarboxylate (62.0 ml_, 393.8 mmol) was added dropwise via addition funnel. The reaction mixture was stirred at room temperature for 5 h and then was filtered through a fritted funnel and concentrated onto silica gel. Purification by column chromatography provided 29.7 g (99%) of the title compound. 1H NMR (400 MHz, DMSO-cfe): delta 8.17 (s, 1 H), 4.30 (t, 2H, J= 8.2 Hz), 3.76 (s, 3H), 1.07 (t, 2H, J= 8.4 Hz), 0.04 (s, 9 H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
98% | Intermediate Example 1: Methyl 5-amino-3-({(1R)-1-f2-(trifluoromethyl)- phenv?ethylloxy)-2-thiophenecarboxvlate; Step A - Methyl 5-nitro-3-({(1 R)- 1-[2-(trifluoromethyl)phenyl]ethyl}oxy)-2- thiophenecarboxylate; A slurry of polymer-supported triphenylphosphine (62.36 g, 2.21 mmol/g, 137.8 mmol) in DCM (1.0 L) was stirred at room temperature for 10 minutes. The mixture was cooled to 0 0C. Methyl 3-hydroxy-5-nitro-2- thiophenecarboxylate (20.00 g, 98.44 mmol), which may be prepared in a manner analogous to the literature procedure (Barker, J. M.; Huddleston, P. R.; Wood, M. L.; Burkitt, SA Journal of Chemical Research (Miniprint) 200Lambda, 1001-1022) was added, followed by (1 ^-1-[2-(trifluoromethyl)phenyl]ethanol (26.20 g, 137.8 mmol) and di-fe/-butyl azodicarboxylate (31.73 g, 137.8 mmol). The reaction mixture was stirred at room temperature for 21.25 h and then was filtered through a fritted funnel and concentrated. The residue was treated with 4 N HCI in 1 ,4-dioxane (300 ml_) and stirred at room temperature for 3 h. The mixture was then quenched by addition of 3 N sodium hydroxide (300 mL) and saturated aqueous NaHCO3 (200 ml_). The mixture was extracted with DCM (3 x 250 mL). The combined organic fractions were dried over MgSO4, filtered, and concentrated onto silica gel. Purification by column EPO <DP n="41"/>chromatography (0 to 25% EtOAc:hexanes) provided 36.08 g (98%) of the title compound as yellow oil. 1H NMR (300 MHz, CDCI3): delta 7.82 (d, 1H1 J= 7.8 Hz), 7.68 (d, 1 H, J= 7.8 Hz), 7.59 (t, 1H1 J= 7.4 Hz), 7.46 (s, 1 H), 7.42 (t, 1H1 J= 7.6 Hz), 5.77 (q, 1H1 J= 6.1 Hz), 3.94 (s, 3H), 1.74 (d, 3H, J= 6.1 Hz). | |
98% | Step A-Methyl 5-nitro-3-({(1R)-1-[2-(trifluoromethyl)phenyl]ethyl}oxy)-2-thiophenecarboxylate A slurry of polymer-supported triphenylphosphine (62.4 g, 2.21 mmol/g, 138 mmol) in DCM (1.0 L) was stirred at rt for 10 minutes. The mixture was cooled to 0 C. Methyl 3-iiydroxy-5-nitro-2-thiophenecarboxylate (20.0 g, 98.4 mmol), which may be prepared in a manner analogous to the literature procedure (Barker, J. M.; Huddleston, P. R.; Wood, M. L.; Burkiti, S. A. Journal of Chemical Research (Miniprint) 2001, 1001-1022) was added, followed by (1S)-1-[2-(trifluorcmethyl)phenyl]ethanol (26.2 g, 138 mmol) and di-tert-butyl azodicarboxylate (31.7 g, 138 mmol), The reaction mixture was stirred at rt for 21.25 h and then was filtered through a fritted funnel and concentrated. The residue was treated with 4 N HCl in 1,4-dioxane (300 mL) and stirred at rt for 3 h. The mixture was then quenched by addition of 3 N NaOH (300 mL) and saturated aqueous NaHCO3 (200 mL). The mixture was extracted with DCM (3×250 mL). The combined organic fractions were dried over MgSO4, filtered, and concentrated onto silica gel. Purification by column chromatography (0 to 25% EtOAc:hexanes) provided 36.1 g (98%) of the title compound as yellow oil. 1H NMR (300 MHz, CDCl3): delta 7.82 (d, 1H, J=7.8 Hz), 7.68 (d, 1H, J=7.8 Hz), 7.59 (t 1H, J=7.4 Hz), 7.46 (s, 1H), 7.42 (t, 1H, J=7.6 Hz), 5.77 (q, 1H, J=6.1 Hz), 3.94 (s, 3H), 1.74 (d, 3H, J=6.1 Hz). | |
98% | INTERMEDIATE EXAMPLE 1; Methyl 5-amino-3-({(1R)-1-[2-(trifluoromethyl)phenyl]ethyl}oxy)-2-thiophenecarboxylate; Step A-Methyl 5-nitro-3-({(1R)-1-[2-(trifluoromethyl)phenyl]ethyl}oxy)-2-thiophenecarboxylate; A slurry of polymer-supported triphenylphosphine (62.36 g, 2.21 mmol/g, 137.8 mmol) in DCM (1.0 L) was stirred at rt for 10 min. The mixture was cooled to 0 C. Methyl 3-hydroxy-5-nitro-2-thiophenecarboxylate (20.00 g, 98.44 mmol), which may be prepared in a manner analogous to the literature procedure (Barker, J. M.; Huddleston, P. R.; Wood, M. L.; Burkitt, S. A. Journal of Chemical Research (Miniprint) 2001, 1001-1022) was added, followed by (1S)-1-[2-(trifluoromethyl)phenyl]ethanol (26.20 g, 137.8 mmol) and di-tert-butyl azodicarboxylate (31.73 g, 137.8 mmol). The reaction mixture was stirred at rt for 21.25 h and then was filtered through a fritted funnel and concentrated. The residue was treated with 4 N HCl in 1,4-dioxane (300 mL) and stirred at rt for 3 h. The mixture was then quenched by addition of 3 N NaOH (300 mL) and saturated aqueous sodium bicarbonate (200 mL). The mixture was extracted with DCM (3×250 mL). The combined organic fractions were dried over MgSO4, filtered, and concentrated onto silica gel. Purification by column chromatography (0 to 25% EtOAc:hexanes) provided 36.08 g (98%) of the title compound as yellow oil. 1H NMR (300 MHz, CDCl3): delta 7.82 (d, 1H, J=7.8 Hz), 7.68 (d, 1H, J=7.8 Hz), 7.59 (t, 1H, J=7.4 Hz), 7.46 (s, 1H), 7.42 (t, 1H, J=7.6 Hz), 5.77 (q, 1H, J=6.1 Hz), 3.94 (s, 3H), 1.74 (d, 3H, J=6.1 Hz). |
98% | With di-tert-butyl-diazodicarboxylate; In dichloromethane; at 20℃; for 21.25h; | slurry of polymer-supported triphenylphosphine (62.36 g, 2.21 mmol/g, 137.8 mmol) in DCM (1.0 L) was stirred at room temperature for 10 minutes. The mixture was cooled to 0 0C. Methyl 3-hydroxy-5-nitro-2- thiophenecarboxylate (20.00 g, 98.44 mmol), which may be prepared in a manner analogous to the literature procedure (Barker, J. M.; Huddleston, P. R.; Wood, M. L.; Burkitt, S.A. Journal of Chemical Research (Miniprint) 2Q0Lambda , 1001-1022) was added, followed by (1 S)-1-[2-(trifluoromethyl)phenyl]ethanol (26.20 g, 137.8 mmol) and di-t°/T-butyl azodicarboxylate (31.73 g, 137.8 mmol). The reaction mixture was stirred at room temperature for 21.25 h and then was filtered through a fritted funnel and concentrated. The residue was treated with 4 N HCI in 1,4-dioxane (300 mL) and stirred at room temperature for 3 h. The mixture was then quenched by addition of 3 N sodium hydroxide (300 mL) and saturated aqueous NaHCO3 (200 mL). The mixture was extracted with DCM (3 x 250 mL). The combined organic fractions were dried over MgSO4, filtered, and concentrated onto silica gel. Purification by column chromatography (0 to 25% EtOAc:hexanes) provided 36.08 g (98%) of the title compound as yellow oil. 1H NMR (300 MHz, CDCI3): delta 7.82 (d, 1H, J= EPO <DP n="42"/>7.8 Hz), 7.68 (d, 1 H, J= 7.8 Hz), 7.59 (t, 1 H, J= 7.4 Hz), 7.46 (s, 1 H), 7.42 (t, 1 H, J= 7.6 Hz), 5.77 (q, 1 H, J= 6.1 Hz), 3.94 (s, 3H), 1.74 (d, 3H, J= 6.1 Hz). |
98% | With di-tert-butyl-diazodicarboxylate; In dichloromethane; at 0 - 20℃; for 21.25h; | A slurry of polymer-supported triphenylphosphine (62.36 g, 2.21 mmol/g, 137.8 mmol) in dichloromethane (1.0 L) was stirred at room temperature for 10 minutes. The mixture was cooled to 0 C. Methyl 3-hydroxy-5-nitro-2- thiophenecarboxylate (20.00 g, 98.44 mmol), which may be prepared in a manner analogous to the literature procedure (Barker, J. M.; Huddleston, P. R.; Wood, M. L.; Burkitt, S.A. Journal of Chemical Research (Miniprint) 2WLambda , 1001-1022) was added, followed by (1 S)-1-[2-(trifluoromethyl)phenyl]ethanol (26.20 g, 137.8 mmol) and di-terf-butyl azodicarboxylate (31.73 g, 137.8 mmol). The reaction mixture was stirred at room temperature for 21.25 h and then was filtered through a fritted funnel and concentrated. The residue was treated with 4 N HCI in 1 ,4-dioxane (300 ml_) and stirred at room temperature for 3 h. The mixture was then quenched by addition of 3 N sodium hydroxide (300 mL) and saturated aqueous sodium bicarbonate (200 rnL). The mixture was extracted with dichloromethane (3 x 250 mL). The combined organic fractions were dried over magnesium sulfate, filtered, and concentrated onto silica gel. Purification by column chromatography (0 to 25% ethyl acetate:hexanes) provided 36.08 g (98%) of the title compound as yellow oil. 1H NMR (300 MHz, CDCI3): 57.82 (d, 1H, J= 7.8 Hz)1 7.68 (d, 1H, J= 7.8 Hz), 7.59 (t, 1 H, J= 7.4 Hz), 7.46 (s, 1 H), 7.42 (t, 1H, J= 7.6 Hz), 5.77 (q, 1 H, J= 6.1 Hz)1 3.94 (S1 3H)1 1.74 (d, 3H, J= 6.1 Hz). |
98% | With triphenylphosphine on polystyrene; di-tert-butyl-diazodicarboxylate; In dichloromethane; at 0 - 20℃; for 21.25h; | Intermediate 29: Methyl delta-ami?o-3-{{{1 ff)-1-|[2- (trifluoromethyi)phe?yi|ethyi}oxy)-2-thiophenec3rboxyiateStep A - Methyl 5-nitro-3-({(1/t)-1-(2-(trifluoiOmethyl)phenyl]ethyl}o>cy)-2- thiophenecarboxyiateA slurry of polymer-supported triphenySphosphi?e (82.4 g, 2.21 r?mol/g, 138 r?mol) in DCM (1.0 L) was stirred at for 10 minutes. The mixture was cooled to 0 0G. Methyl 3-hydroxy-5-nitra-2-thiophenecartoxy.ate (20.0 g, 98.4 mmol), which may be prepared in 8 manner analogous to the literature procedure{Barker, J. M.; Huddleston, P. R.; Wood, M.L.; Burkitt, S.A. Journal of Chemical Research (M/nphirintJIQQt, 1001-1022) was added, followed by {1 S)-I-[Z- {trifliioromethyi)phenyl]ethano. (28.2 g, 138 mmol) and di-t°/f butyl azodicarboxylate (31.7 Q3 138 mmoi). The reaction mixture was stirred at it for 21.25 h and then was filtered through a fritted funnel and concentrated. The <n="124"/>residue was treated with 4 N HC. in 1 ,4-dioxa?e (300 ml) and stirred at rt for 3 h, The mixture was then quenched by addition of 3 N NaOH (300 ml_) and saturated aqueous NaHCO3 (200 ml). The mixture was extracted with DCM (3 x 250 rnL). The combined organic fractions were dried over IVIgSO4, filtered, and concentrated onto silica gel Purification by column chromatography (0 to 25% EtOAc:hexanes) provided 36.1 g (98%) of the title compound as yellow oil. 1H NlVIR (300 MHz1 CDCb): 6 7.82 (d, 1H, J= 7.8 Hz), 7.68 (d, I H1 J= 7,8 Hz), 7,59 (t, 1 H1 J^ 7.4 Hz), 7.46 (s, I H), 7.42 |