Structure of 955929-54-1
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 955929-54-1 |
Formula : | C15H21BO4 |
M.W : | 276.14 |
SMILES Code : | O=C(OC)C1=CC=CC(B2OC(C)(C)C(C)(C)O2)=C1C |
MDL No. : | MFCD13190786 |
InChI Key : | ZEWWIRVGQHLZJP-UHFFFAOYSA-N |
Pubchem ID : | 57422592 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H332-H335 |
Precautionary Statements: | P261-P280-P305+P351+P338 |
Num. heavy atoms | 20 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.53 |
Num. rotatable bonds | 3 |
Num. H-bond acceptors | 4.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 79.16 |
TPSA ? Topological Polar Surface Area: Calculated from |
44.76 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
0.0 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
3.13 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
2.08 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
1.79 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.29 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.86 |
Log S (ESOL):? ESOL: Topological method implemented from |
-3.55 |
Solubility | 0.0782 mg/ml ; 0.000283 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-3.74 |
Solubility | 0.0503 mg/ml ; 0.000182 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-4.46 |
Solubility | 0.0096 mg/ml ; 0.0000348 mol/l |
Class? Solubility class: Log S scale |
Moderately soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
Yes |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-5.76 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<0.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
3.2 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With dicyclohexyl-(2',6'-dimethoxybiphenyl-2-yl)-phosphane; potassium phosphate;palladium diacetate; In water; toluene; at 60℃; for 14.5h; | Production Example 9 In an atmosphere of nitrogen, a mixture of methyl 2-methyl-3-(4,4,5,5-tetrarnethyl-1,3,2-dioxaborolan-2-yl)benzoate, 4-bromo-3,5-dimethylphenol, palladium acetate, dicyclohexyl(2',6'-dimethoxybiphenyl-2-yl)phosphine, tripotassium phosphate, toluene and water was stirred for 14.5 hours with heating at 60C to obtain ethyl 4'-hydroxy-2,2',6'-trimethylbiphenyl-3-carboxylate. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium phosphate; triphenylphosphine;bis-triphenylphosphine-palladium(II) chloride; In 1,4-dioxane; at 100℃; for 72.0h; | Production Example 5 In an atmosphere of nitrogen, a mixture of methyl 3-bromo-2-methylbenzoate, bis(pinacolate)diboron, bis(triphenylphosphine)palladium(II) dichloride, triphenyl phosphine, tripotassium phosphate and dioxane was stirred at 100C for 3 days, thereby obtaining methyl 2-methyl-3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)benzoate. | |
With potassium acetate;bis(triphenylphosphine)benzylideneruthenium(II) dichloride; triphenylphosphine; In 1,4-dioxane; at 20 - 100℃;Inert atmosphere; | Preparation Example 13 Under a nitrogen atmosphere, a mixture of methyl 3-bromo-2-methylbenzoate (53.00 g), 4,4,4',4',5,5,5',5'-octamethyl-2,2'-bi-1,3,2-dioxaborolane (88.10 g), bistriphenylphosphine palladium chloride (8.12 g), triphenylphosphine (6.07 g), potassium acetate (68.10 g), and dioxane (530 mL) was heated and stirred at 100 C. for 29 hours, and then cooled to room temperature. The reaction mixture was filtered through Celite and washed with ethyl acetate. The resulting filtrate was concentrated under reduced pressure and the residue was purified by silica gel column chromatography (hexane-ethyl acetate) to obtain methyl 2-methyl-3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)benzoate (54.00 g) as a colorless oil. | |
With dichloro(1,1'-bis(diphenylphosphanyl)ferrocene)palladium(II)*CH2Cl2; potassium acetate; In 1,4-dioxane; at 100℃; for 16.0h;Inert atmosphere; | PdCl2(dppf). CH2Cl2 (80 g, 21 mmol) was added to a de-gassed solution of methyl 3-bromo-2-methylbenzoate (100 g, 438 mmol) and bis(pinacolato)diboran (89 g, 400 mmol) and KOAc (107.4 g, 1.095 mol) in 1,4-dioxane (600 mL) and stirred at 100 C. for 16 h. The solvent was removed by rotary evaporation. The residue was diluted with ice-cold water (100 mL) and the aqueous layer was extracted with ethyl acetate (2×1 L), washed with water (500 mL) and brine (500 mL), dried over anhydrous Na2SO4, filtered and concentrated under reduced pressure to afford methyl 2-methyl-3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)benzoate 2 (120 g) as a black gummy solid. The crude product was used in the next step without purification. ES+, m/z 277.1 [M+H]; [C15H21BO4]; 1H NMR (400 MHz, CDCl3): delta 7.86-7.82 (m, 2H), 7.27-7.19 (m, 1H), 3.89 (s, 3H), 2.73 (s, 3H), 1.35 (s, 12H). |
With (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; potassium acetate; In 1,4-dioxane; at 110℃;Inert atmosphere; | A mixture of methyl 3-bromo-2-methylbenzoate II-2 (3g, 13.1 mmol), 4,4,4',4',5,5,5',5'-octamethyl-2,2'-bi(1,3,2-dioxaborolane (4 g, 15.7 mmol), Pd(dppf)Cl2 (670 mg, 0.9 mmol), KOAc (2.6 g, 26.2 mmol) in 150 mL of dioxane was stirred at 110C under N2 overnight. The reaction mixture was filtered and concentrated, then extracted with ethyl acetate. The organic layer was dried over Na2S04, filtered and concentrated. The crude was purified by column chromatography (petroleum ether : ethyl acetate = 80 : 1) to give a product as a green oil (2.9 g, 81%). 1H NMR (400 MHz, CDC13) _ 7.86-7.82 (m, 2H), 7.22- 7.21 (m, 1H), 3.88 (s, 3H), 2.74 (s, 3H), 1.36 (s, 12H). | |
With potassium acetate;bis-triphenylphosphine-palladium(II) chloride; triphenylphosphine; In 1,4-dioxane; at 100℃; for 29.0h;Inert atmosphere; | Production Example 6 Under a nitrogen atmosphere, a mixture of methyl 3-bromo-2-methylbenzoate (53.00 g), 4,4,4',4',5,5,5',5'-octamethyl-2,2'-bis-1,3,2-dioxaborolane (88.10 g), bistriphenylphosphine palladium(II) dichloride (8.12 g), triphenylphosphine (6.07 g), potassium acetate (68.10 g) and dioxane (530 ml) was stirred at 100C for 29 hours, and then cooled to room temperature. The obtained reaction mixture was filtrated over Celite and washed with ethyl acetate. The obtained filtrate was concentrated under reduced pressure, and the obtained residue was purified by silica gel column chromatography (hexane-ethyl acetate) to obtain 54.00 g of methyl 2-methyl-3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolane-2-yl)benzoate. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With dicyclohexyl-(2',6'-dimethoxybiphenyl-2-yl)-phosphane; potassium phosphate;palladium diacetate; In water; toluene; at 80℃; for 12.0h; | Production Example 34 In an atmosphere of nitrogen, a mixture of 1-bromo-4-(3-fluoro-3-methylbutoxy)-2-methylhenzene, <strong>[955929-54-1]methyl 2-methyl-3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)benzoate</strong>, palladium acetate, dicyclohexyl(2',6'-dimethoxybiphenyl-2-yl)phosphine, tripotassium phosphate, toluene and water was stirred at 80C for 12 hours to obtain methyl 4'-(3-fluoro-3-methylbutoxy)-2,2'-dimethylbiphenyl-3-carboxylate. Lithium aluminum hydride was added to a THF solution of the resulting methyl 4'-(3-fluoro-3-methylbutoxy)-2,2'-dimethylbiphenyl-3-carboxylate under ice-cooling, followed by warming up to room temperature and stirring for 1 hour to obtain [4'-(3-fluoro-3-methylbutoxy)-2,2'-dimethylbiphenyl-3-yl]methanol. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With potassium phosphate;dicyclohexyl-(2',6'-dimethoxybiphenyl-2-yl)-phosphane; palladium diacetate; In water; ethyl acetate; toluene; at 80℃; for 24.0h;Inert atmosphere; | Preparation Example 6A mixture of 5-bromo-2-(2-[tert-butyl(dimethyl)silyl]oxy}ethoxy)-4,6-dimethylpyrimidine (7.21 g), <strong>[955929-54-1]methyl 2-methyl-3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)benzoate</strong> (6.10 g), palladium(II) acetate (242 mg), dicyclohexyl(2',6'-dimethoxybiphenyl-2-yl)phosphine (848 mg), tripotassium phosphate (12.7 g), toluene (100 mL), and water (10 mL) was stirred at 80 C. for 24 hours under a nitrogen atmosphere. The reaction mixture was cooled to room temperature, then water and ethyl acetate were added thereto, and the insoluble materials were removed by filtration through Celite. The filtrate was subjected to liquid-separation, and then the aqueous layer was extracted with ethyl acetate. The organic layer was washed with a saturated aqueous sodium chloride solution and then dried over anhydrous magnesium sulfate. The desiccant was removed by filtration, and then the solvent was evaporated under reduced pressure. The resulting residue was purified by silica gel column chromatography (hexane-ethyl acetate) to obtain methyl 3-[2-(2-[tert-butyl(dimethyl)silyl]oxy}ethoxy)-4,6-dimethylpyrimidin-5-yl]-2-methylbenzoate (7.30 g) as a pale yellow oil. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
43% | With tris-(dibenzylideneacetone)dipalladium(0); sodium carbonate; XPhos; In 1,4-dioxane; water; at 100℃; for 16.0h;Inert atmosphere; | A mixture of (S)-6-chloro-N-(6-(2-methylpyrrolidin-1-yl)pyridin-2-yl)imidazo[1,2-b]pyridazin-8-amine (124 mg, 0.38 mmol), <strong>[955929-54-1]methyl 2-methyl-3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)benzoate</strong> (124 mg, 0.45 mmol), Pd2(dba)3 (22 mg, 0.038 mmol), X-phos (73 mg, 0.152 mmol) and Na2CO3 (121 mg, 1.14 mmol) in dioxane (10 mL) and water (1 mL) was heated to 100 C. with stirring for 16 h under N2. The solvent was removed in vacuo and the resulting mixture was purified by chromatography (silica gel, 200-300 mesh, CH2Cl2:MeOH=20:1) to give (S)-methyl 2-methyl-3-(8-(6-(2-methylpyrrolidin-1-yl)pyridin-2-ylamino)imidazo[1,2-b]pyridazin-6-yl)benzoate (72 mg, 43%) as a yellow solid. LC-MS: [M+H]+, 443.2, tR=1.880 min. |
43% | With tris-(dibenzylideneacetone)dipalladium(0); sodium carbonate; XPhos; In 1,4-dioxane; water; at 100℃; for 16.0h; | A mixture of (5)-6-chloro-N-(6-(2-methylpyrrolidin-l-yl)pyridin-2-yl)imidazo[l,2-b]pyridazin- 8-amine (124 mg, 0.38 mmol), methyl 2-methyl-3-(4,4,5,5-tetramethyl-l,3,2-dioxaborolan-2- yl)benzoate (124 mg, 0.45 mmol), Pd2(dba)3 (22 mg, 0.038 mmol), X-phos (73 mg, 0.152 mmol) and Na2CC"3 (121 mg, 1.14 mmol) in dioxane (10 mL) and water (1 mL) was heated to 100 C with stirring for 16 h under N2. The solvent was removed in vacuo and the resulting mixture was purified by chromatography (silica gel, 200 - 300 mesh, CH2C12 : MeOH = 20 : 1) to give (S)- methyl 2-methyl-3-(8-(6-(2-methylpyrrolidin-l-yl)pyridin-2-ylamino)imidazo[l,2-b]pyridazin - 6-yl)benzoate (72 mg, 43 %) as a yellow solid. LC-MS: [M+H]+, 443.2, tR = 1.880min. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
87% | With N-Bromosuccinimide; 2,2'-azobis(isobutyronitrile); In acetonitrile; at 90℃; for 3.0h; | Methyl 2-methyl-3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolane-2-yl)benzoate (prepared in accordance with the reference [EP 2011788 A1]; 2.0 g, 7.1 mmol) was dissolved in CH3CN (40 mL), which was then added with AIBN (23 mg, 0.14 mmol) and N-bromosuccinimide (1.5 g, 8.5 mmol), followed by stirring for 3 hours at 90C. The reaction mixture thus obtained was concentrated, and purified by silica gel chromatography to obtain the title compound (colorless oil, 2.2 g, 87% yield). (0513) 1H NMR (300 MHz, CDCl3) delta 7.97-7.93 (m, 2H), 7.34 (t, 1H), 5.43 (s, 2H), 3.95 (s, 3H), 1.39 (s, 12H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
78% | With (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; potassium carbonate; In 1,2-dimethoxyethane; water; at 80℃; | Example 122A methyl 3-(6-aminopyridin-2-yl)-2-methylbenzoate 6-chloropyridin-2-amine (0.257 g, 2 mmol), <strong>[955929-54-1]methyl 2-methyl-3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)benzoate</strong> (0.607 g, 2.200 mmol), potassium carbonate (0.663 g, 4.80 mmol), and PdCl2dppf (0.073 g, 0.100 mmol) in dimethoxyethane (6 mL) and water (3 ml) were heated at 80 C. overnight. The mixture was diluted with ethyl acetate (20 mL) and washed with water (3*5 mL) and brine (5 mL) sequentially. The organic layer was dried over Na2SO4, filtered, and concentrated in vacuo. The residue was chromatographed on silica gel, eluting with 10 to 60% ethyl acetate-heptanes. The title compound was obtained as a white solid (0.378 g, 78%). 1H NMR (400 MHz, DMSO-d6) delta 7.70 (dd, J=7.7, 1.5 Hz, 1H), 7.51-7.26 (m, 3H), 6.57-6.38 (m, 2H), 5.97 (s, 2H), 3.84 (s, 3H), 2.36 (s, 3H). MS (DCI+) m/z 243.0 (M+H). |
A1511695 [1451374-90-5]
(3-(Methoxycarbonyl)-2-methylphenyl)boronic acid
Reason: Optical isomers
A138383 [1198615-87-0]
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