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CAS No. : | 104091-09-0 | MDL No. : | MFCD09037362 |
Formula : | C20H19NO6 | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | QEPWHIXHJNNGLU-QGZVFWFLSA-N |
M.W : | 369.37 | Pubchem ID : | 40501223 |
Synonyms : |
D-Fmoc-glutamic acid
|
Num. heavy atoms : | 27 |
Num. arom. heavy atoms : | 12 |
Fraction Csp3 : | 0.25 |
Num. rotatable bonds : | 9 |
Num. H-bond acceptors : | 6.0 |
Num. H-bond donors : | 3.0 |
Molar Refractivity : | 96.56 |
TPSA : | 112.93 Ų |
GI absorption : | High |
BBB permeant : | No |
P-gp substrate : | Yes |
CYP1A2 inhibitor : | Yes |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -6.75 cm/s |
Log Po/w (iLOGP) : | 1.99 |
Log Po/w (XLOGP3) : | 2.54 |
Log Po/w (WLOGP) : | 2.84 |
Log Po/w (MLOGP) : | 1.9 |
Log Po/w (SILICOS-IT) : | 2.28 |
Consensus Log Po/w : | 2.31 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 0.0 |
Bioavailability Score : | 0.56 |
Log S (ESOL) : | -3.47 |
Solubility : | 0.127 mg/ml ; 0.000343 mol/l |
Class : | Soluble |
Log S (Ali) : | -4.56 |
Solubility : | 0.0102 mg/ml ; 0.0000276 mol/l |
Class : | Moderately soluble |
Log S (SILICOS-IT) : | -4.65 |
Solubility : | 0.00819 mg/ml ; 0.0000222 mol/l |
Class : | Moderately soluble |
PAINS : | 0.0 alert |
Brenk : | 0.0 alert |
Leadlikeness : | 2.0 |
Synthetic accessibility : | 3.83 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H302-H315-H319-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
76% | With potassium carbonate In acetonitrile at 20℃; for 2 h; | General procedure: To a solution of H-Phe-OH (100 mg, 60.5 mmol) in 50 percent MeCN (6.1 mL)were added Fmoc-OPhth (233 mg, 60.5 mmol) and K2CO3 (167 mg, 121 mmol) and stirred at room temperature. After 2 h of stirring saturated sodium bicarbonate solution and H2O were added and the resulting solution was washed with diethyl ether. The aqueous phase is acidified to pH 1 with 1M HCl and extracted with diethyl ether. The organic phase was washed with 1 M HCl, H2O, brine, dried over MgSO4. The filtrate was evaporatedevaporated under reduced pressure to give yellow solid as crude product. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
78% | Stage #1: With dicyclohexyl-carbodiimide In tetrahydrofuran at 20℃; for 8 h; Cooling with ice Stage #2: With ammonia In tetrahydrofuran for 1.5 h; Cooling with ice |
Fmoc-D-Glu-OH (59.8 g, 1.0 eq) was dissolved in anhydrous tetrahydrofuran (THF)(324 mL). DCC (40.1 g, 1.2eq) was then added while stirring in ice-water bath. The reaction mixture was allowed to warm to r.t and stirring wasmaintained for additional 8 h to produce 1,3-dicyclohexylurea (DCU). The precipitates were filtered off, and washed withsmall amount THF. Dry ammonia gas was then bubbled through the reactants while stirring in a NaCl salt-ice bath. Thereaction was completed after 1.5 h when no more white solid was precipitated. Still standing for 30 min, small amountMeOH was added to dissolve the solid. The mixture was cooled in a ice-water bath again. Then 2.0 N HCl was addedcarefully and slowly to adjust pH to 2-3. The solvent was evaporated under vacuum. The resulting solid was dissolvedin AcOEt and then washed with diluted HCl, saturated aqueous NaHCO3 solution, and H2O sequentially. The organiclayer was separated and combined, then dried with MgSO4 overnight, filtered and evaporated under vacuum. Thenresidue was recrystallized with ethyl acetate-cyclohexane system. After filtration, 46.5g target product was obtained witha yield of 78percent. m.p.=204~205°C,[α]=-4.2°(C=10mg/mL,DMF). 1H-NMR(500MHz, DMSO): 7.88(2H, d, J=8.0Hz), 7.72(2H, m), 7.42(2H, m), 7.40(1H, m), 7.40(1H, br.s),7.32(2H, m, 7.02(1H, br.s),4.27(2H, m), 4.20(1H, m), 3.93(1H, dd, J=13.5 and 8.5Hz), 2.25(2H, m), 1.89(1H, m),1.73(1H,m). 13C-NMR(125MHz,DMSO): 173.9, 173.4, 155.9, 143.8, 140.7, 127.6, 127.0, 125.3, 120.0, 65.6, 53.8, 46.6,30.4, 27.2. ESI-MS: 369.03 [M+H]+, 759.98 [2M+Na]+. HR-MS(TOF): 369.1448 [M+H]+, 759.2623 [2M+Na]+, C20H20N2O5. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
6.8% | With piperidine; chlorotriisopropylsilane; benzotriazol-1-yloxyl-tris-(pyrrolidino)-phosphonium hexafluorophosphate; water; benzotriazol-1-ol; O-(1H-benzotriazol-1-yl)-N,N,N',N'-tetramethyluronium hexafluorophosphate; 1,8-diazabicyclo[5.4.0]undec-7-ene; N-ethyl-N,N-diisopropylamine; trifluoroacetic acid; In dichloromethane; N,N-dimethyl-formamide; | Example 1. Glu-Ile-Ala-Gln-Leu-Glu-Baa-Glu-Ile-Ser-Gln-Leu-Glu-Gln-NH2 (21). The coupling of the first 6 residues was carried out on an automated APEX 396 Multiple Peptide Synthesizer (Advanced ChemTech) under nitrogen flow using a rink amide resin (430 mg, 0.3 mM) as the solid phase. Each coupling uses four-fold excess of the amino acid, and HBTU, HOBt as activators and DIEA as base in a 1:1:1:3 ratio. Fmoc deprotection was performed using 25% piperidine in DMF solution. After the deprotection of the sixth residue (GIu), one sixth of the resin {ca. 0.05 mM) was placed in a 25 mL fritted glass tube, and swollen with DMF (ca. 10 mL). A 3-fold excess of Fmoc-Baa was dissolved in DMF/DCM (2:1) (9 mL) in a second glass vial. The Fmoc-Baa solution was first activated with PyBOP/HOBt/DIEA (1:1:1:2) for 2 minutes, then mixed with the resin in the fritted glass tube, and shaken on an automated shaker for 1 day at room temperature. Then the resin was washed thoroughly with DMF and DCM to remove unreacted Fmoc-Baa, and retransferred in the automated synthesizer reactor. Fmoc removal was performed by the synthesizer using a 5% DBU solution in DMF. The subsequent amino acid couplings were accomplished using the conditions described above. The final peptide was cleaved from the solid support by washing with TFA:TEPS:H2O (98: 1 : 1) (10 mL) for 4 h and a second time for 18 hrs. The crude fractions were washed with Et2O and lyophilized to remove TFA. Purification was carried out on an Varian C4 column using a gradient of TFA (0.1%) in H2O to TFA in IPA (0.1%) over 75 min at flow rate of 5.0 mL-mur1. The elution time was 57 min. Yield: 8.5 mg (6.8%). MALDI-MS: m/z, calculated 2488 (M++Na), found 2489. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
A. Elongation of the Peptide on the Resin Each amino acid was added to the peptide sequence using standard Fmoc deprotection and coupling conditions. 22.7 g of Rink Amide MBHA resin was added to a 500 mL peptide reaction vessel. Each amino acid was added to the peptide-resin using the following steps: 1. Wash with 20% piperidine in DMF (250 mL×3 min) 2. Deprotect with 20% piperidine in DMF (250 mL×1 hour). 3. Wash with DMF (2×250 mL), DCM (2×250 mL), DMF (2×250 mL). 4. Dissolve amino acid (4 eq.) and 1-hydroxybenzotriazole (4 eq.) in DMF (250 mL). 5. Add amino acid solution to resin, and then add 1,3-diisopropylcarbodiimide (4 eq.). 6. Shake resin with activated amino acid for 18 hours at 250 rpm on an orbital shaker, unless otherwise indicated. 7. Wash the resin with DMF (1×250 mL), DCM (2×250 mL), DMF (3×250 mL). 8. Check coupling using the quantitative ninhydrin test shown below. 9. Cleave a small amount of the peptide from the resin with 90% trifluoroacetic acid 5% triisopropylsilane, and 5% water. Check purity of peptide by analytical HPLC. The following is a list of the amino acids used in the synthesis: Amino Acid Amount Company Catalog No. 1. Pseudotripeptide*?** 47.2 g in house synthesis 2. Fmoc-L-Ile-OH 21.2 g Novabiochem 04-12-1024 3. Fmoc-L-Tyr(tBu)-OH 27.6 g Novabiochem 04-12-1037 4. Fmoc-L-Cys(Trt)-OH 35.1 g Novabiochem 04-12-1018 5. Fmoc-L-Leu-OH 21.2 g Novabiochem 04-12-1025 6. Fmoc-L-Gly-OH 17.8 g Novabiochem 04-12-1001 7. Fmoc-L-Tyr(3-Cl)-OH?? 26.3 g in house synthesis 8. Fmoc-L-Hyp(tBu)-OH 24.6 g Novabiochem 04-12-1078 9. Fmoc-L-Cys(Trt)-OH 35.1 g Novabiochem 04-12-1018 10. Fmoc-D-Glu-OH 25.5 g Novabiochem 04-13-1051 11. Fmoc-L-Tyr(tBu)-OH 27.6 g Novabiochem 04-12-1037 12. Boc-L-Dab(Boc)-OH.DCHA 30.0 g Bachem A-3480 *The pseudotripeptide was synthesized in house using the procedure shown below. ?The pseudotripeptide was allowed to couple over the weekend for three days. (Previous experience with the synthesis of EP2080 peptide has shown that this longer coupling time was required for the attachment of the first amino acid to the resin). **Typically the resin is capped with a solution of 5% acetic anhydride and 6% diisopropylethylamine in DMF after the first coupling. After the coupling of the amino acids is complete, the resin is washed with DMF (3 × 250 mL) and the capping solution (250 mL). The resin is shaken with the capping solution (250 mL) for 1 hour. ??Fmoc-Tyr(3-Cl)-OH was synthesized in house using the procedure shown below.; I. Cleavage, Cyclization and Purification Procedures i. Cleavage After the elongation of the peptide on the resin was complete, the resin was washed with DCM (3×250 mL). The resin was dried under reduced pressure at 22-25 C. for 18 hours. The weight of the dry peptide-resin (57.08 g) was determined. Approximately 15 mL/g (840 mL) of the following cleavage cocktail was added: 80% trifluoroacetic acid, 5% triisopropylsilane, 5% dodecanethiol, 5% dichloromethane, and 5% water. The peptide-resin was shaken for 1.25 hours at room temperature on an orbital shaker (250 rpm), and then filtered and washed with trifluoroacetic acid (2×100 mL). The filtrates were combined and poured into ether* (4 L) at 0 C. over 5 minutes to form a precipitate. The precipitate was filtered, washed with ether* (1 L), washed with acetonitrile (1 L), and dried under vacuum. 24.87 g. (73.3% purity by area, Analytical Method 2, 41.4% potency) (40% yield based on potency) *Isopropyl ether has been substituted for diethyl ether successfully on a 2 mmol scale. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: The compounds were synthesized by solid phase peptide synthesis (SPPS) using 2-chlorotrityl chloride resin. The corresponding N-Fmoc protected amino acids with side chains properly protected, Fmoc-succinated cystamine, and <strong>[175281-76-2]4-(4-(1-hydroxyethyl)-2-methoxy-5-nitrophenoxy)butanoic acid</strong> were used for SPPS. The first amino acidwas loaded on the resin at the C-terminal with the loading efficiency about 0.6 mmol/g. 20% piperidine in anhydrous N,N-dimethylformamide (DMF) was used during deprotection of Fmoc group. The next Fmoc-protected amino acid (3 equiv.) was then coupled to the free amino group using O-(Benzotriazol-1-yl)-N,N,N,N-tetramethyluroniumhexafluorophosphate (HBTU, 1 equiv.to Fmoc-AA) as the coupling reagent. The growth of the peptide chain was according to the established Fmoc SPPS protocol. After the last coupling step, excessive reagents were removed by a single DMF wash for 5minutes (5 mL per gram of resin), followed by five steps of washing using DCM for 1 min (5 mL per gram of resin). The peptide derivative was cleaved using 92.5% of trifluoroacetic acid with 2.5% of TMS, 2.5% of phenol,and 2.5% of H2O for 20 minutes. 20 mL per gram of resin of ice-cold diethylether was then added to cleavage reagent. The resulting precipitate was filtrated and washed by ice-cold diethylether. The resulting solid was purified by HPLC and dried by lyophilizer. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: The compounds were synthesized by solid phase peptide synthesis (SPPS) using 2-chlorotrityl chloride resin. The corresponding N-Fmoc protected amino acids with side chains properly protected, Fmoc-succinated cystamine, and <strong>[175281-76-2]4-(4-(1-hydroxyethyl)-2-methoxy-5-nitrophenoxy)butanoic acid</strong> were used for SPPS. The first amino acidwas loaded on the resin at the C-terminal with the loading efficiency about 0.6 mmol/g. 20% piperidine in anhydrous N,N-dimethylformamide (DMF) was used during deprotection of Fmoc group. The next Fmoc-protected amino acid (3 equiv.) was then coupled to the free amino group using O-(Benzotriazol-1-yl)-N,N,N,N-tetramethyluroniumhexafluorophosphate (HBTU, 1 equiv.to Fmoc-AA) as the coupling reagent. The growth of the peptide chain was according to the established Fmoc SPPS protocol. After the last coupling step, excessive reagents were removed by a single DMF wash for 5minutes (5 mL per gram of resin), followed by five steps of washing using DCM for 1 min (5 mL per gram of resin). The peptide derivative was cleaved using 92.5% of trifluoroacetic acid with 2.5% of TMS, 2.5% of phenol,and 2.5% of H2O for 20 minutes. 20 mL per gram of resin of ice-cold diethylether was then added to cleavage reagent. The resulting precipitate was filtrated and washed by ice-cold diethylether. The resulting solid was purified by HPLC and dried by lyophilizer. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Synthesis of Compound 1 (ZJ-MCC-Ahx-dEdEdEG): The peptide Fmoc-Ahx-dGlu-dGlu-dGlu-G was assembled on a Wang resin. The three glutamates (dGlu) are of D-isoform. Peptide synthesis was carried out manually by Fmoc chemistry with HCTU (2-(6-Chloro-1H-benzotriazole-1-yl)-1,1,3,3-tetramethylaminium hexafluorophosphate) activation. Generally, peptides were synthesized at a 0.01 mmol scale starting from the C-terminal amino acid on solid support. Fmoc-deprotection at each cycle was carried out using 20percent piperidine in DMF. Coupling reactions were carried out using 3.3 eq. of Fmoc-amino acids in DMF activated with 3.3 eq. of HCTU and 5 equivalents of diisopropylethylamine (DIPEA) in DMF. These steps were repeated each time with an amino acid added. After the peptide sequence was built on the resin, the Fmoc group of the N-terminal amino acid was deprotected. Coupling of 4-(N-maleimidomethyl)cyclohexane-1-carboxylate (SMCC) to the N-terminal amine group was achieved with 3.3 equivalents of SMCC in DMF. Coupling of Cys-C(O)-Glu was performed using 3.3 equivalents of Cys-C(O)-Glu in DMF after coupling SMCC to the peptide. The final peptide resin was washed with DMF and then dichloromethane and dried. Cleavage and deprotection were carried out using TFA/water/triisopropylsilane (950:25:25) for 1 h, the resin was removed by filtration and washed with TFA. The combined filtrate was dried under nitrogen. The synthesized peptide was precipitated by the addition of diethyl ether and collected by centrifugation. The cleaved peptide was purified by preparative HPLC. The products were ascertained by high resolution matrix-assisted laser desorption/ionization mass (MALDI-MS) spectra. Then Fmoc was deprotected followed by coupling of SMCC and Cys-C(O)-Glu. The product has retention time of 11.9 minutes on analytical HPLC with 0-55percent gradient over 45 minutes (flow rate 1 ml/min; A: 10 mM triethylammonium acetate TEAA, pH 7.0; B was acetonitrile.) The mass was verified by MALDI/TOF mass spectrometry?Calculated: 1088.4 (C44H64N8O22S). Found m/z: 1089.4 (M+1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: Peptides (e.g. IETDV (SEQ ID NO: 18) or IETAV (SEQ ID NO: 16)) were synthesized by Fmoc-based solid phase peptide chemistry using preloaded Fmoc-Val-Wang-resin (0.6-0-7 mmol/g, 100-200 mesh), HBTU/DIPEA for couplings, and dry DMF as solvent. Each coupling was carried out for 40 min with a 1/4/3.9/8 stoichiometry of resin/Fmoc-amino acid/HBTU/DIPEA, and was qualitatively evaluated by the ninhydrin test. Fmoc-deprotection was carried out in 20% piperidine in DMF for 5 min, followed by DMF wash and a second piperidine/DMF treatment for 15 min. 1.3 Synthesis of NPEG4-based Dimeric Ligands AB141, AB144 and AB147 (FIGS. 2 and 3) (0147) Ns-NPEG4-diacid-linkerA (3, Scheme 1; 0.1 eq., 0.025 mmol) was pre-activated with HBTU (0.2 eq, 0.05 mmol) and DIPEA (0.4 eq, 0.1 mmol) and added to Fmoc-deprotected Wang-resin-bound IETDV (SEQ ID NO: 18) (1 eq, 0.25 mmol) in a total volume of 4 mL DMF. The reaction was shaken for 45 min and repeated 5 times. The Ns group was removed by adding DBU (0.5 mmol) in DMF (2 mL) followed by mercaptoethanol (0.5 mmol) in DMF (2 mL). The reaction was shaken for 30 min and washed in DMF. Treatment with mercaptoethanol/DBU was repeated once, and the resin washed consecutively with DMF, DCM, MeOH and DCM to provide resin-bound AB141. For AB144 and AB147 the first amino acid of the CPP (L- or D-Arg, respectively) was coupled to the nitrogen by six consecutive couplings of Fmoc-Arg(Pbf)-OH. For each coupling, Fmoc-Arg(Pbf)-OH (0.5 mmol) was activated by HATU in DMF (2 mL, 0.244 M) and collidine (132 muL), before adding it to the drained resin. After 40 minutes of shaking and a DMF wash, the coupling and DMF wash was repeated 5 times followed by a thorough DMF wash. Fmoc was removed with 20% piperidine in DMF, the remaining Tat- or Retroinverso-D-Tat sequence synthesized as described for peptide synthesis, and the final Fmoc group removed.Fluorescent ligands were prepared by coupling 5-FAM(5-carboxyfluorescein; Anaspec, San Jose, Calif., USA) tothe N-terminal amino group of the final and Fmoc-deprotected AB144, AB147, or Tat-NR2B9c, while bound to theresin, to produce AB145, AB148, and M523, respectively.Likewise, 5-FAM was coupled to Ns-deprotected, resin-bound AB141 to produce AB143. 5-FAM was coupled in a1/2/2/3 ratio of N-sites-resin5-FAMJHATIJ/collidine in atotal of 2 mL DMF at a 0.07 mmol scale (molar of NPEGlinker). For AB145, AB148, or M523, coupling time was 6hours. For AB143, 5-FAM was coupled by two consecutivecouplings of 6 and 16 hours, respectively.Synthesized compounds, including dimeric PSD-95 inhibitors and derivatives thereof, were obtained as TFA saltsby treating the resin-bound products with trifluoroacetic acid (TFA)/triisopropylsilane/H20 (90/5/5) for 2 hours (unless other specification is stated), evaporation in vacuo, precipitation with cold ether, lyophilization, and purification with preparative reverse phase high-performance liquid chromatography (RP-HPLC). Compounds were characterized byanalytical HPLC and mass spectrometry (Table 1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Peptides (e.g. IETDV (SEQ ID NO: 18) or IETAV (SEQ ID NO: 16)) were synthesized by Fmoc-based solid phase peptide chemistry using preloaded Fmoc-Val-Wang-resin (0.6-0-7 mmol/g, 100-200 mesh), HBTU/DIPEA for couplings, and dry DMF as solvent. Each coupling was carried out for 40 min with a 1/4/3.9/8 stoichiometry of resin/Fmoc-amino acid/HBTU/DIPEA, and was qualitatively evaluated by the ninhydrin test. Fmoc-deprotection was carried out in 20% piperidine in DMF for 5 min, followed by DMF wash and a second piperidine/DMF treatment for 15 min. 1.3 Synthesis of NPEG4-based Dimeric Ligands AB141, AB144 and AB147 (FIGS. 2 and 3) (0147) Ns-NPEG4-diacid-linkerA (3, Scheme 1; 0.1 eq., 0.025 mmol) was pre-activated with HBTU (0.2 eq, 0.05 mmol) and DIPEA (0.4 eq, 0.1 mmol) and added to Fmoc-deprotected Wang-resin-bound IETDV (SEQ ID NO: 18) (1 eq, 0.25 mmol) in a total volume of 4 mL DMF. The reaction was shaken for 45 min and repeated 5 times. The Ns group was removed by adding DBU (0.5 mmol) in DMF (2 mL) followed by mercaptoethanol (0.5 mmol) in DMF (2 mL). The reaction was shaken for 30 min and washed in DMF. Treatment with mercaptoethanol/DBU was repeated once, and the resin washed consecutively with DMF, DCM, MeOH and DCM to provide resin-bound AB141. For AB144 and AB147 the first amino acid of the CPP (L- or D-Arg, respectively) was coupled to the nitrogen by six consecutive couplings of Fmoc-Arg(Pbf)-OH. For each coupling, Fmoc-Arg(Pbf)-OH (0.5 mmol) was activated by HATU in DMF (2 mL, 0.244 M) and collidine (132 muL), before adding it to the drained resin. After 40 minutes of shaking and a DMF wash, the coupling and DMF wash was repeated 5 times followed by a thorough DMF wash. Fmoc was removed with 20% piperidine in DMF, the remaining Tat- or Retroinverso-D-Tat sequence synthesized as described for peptide synthesis, and the final Fmoc group removed.Synthesized compounds, including dimeric PSD-95 inhibitors and derivatives thereof, were obtained as TFA saltsby treating the resin-bound products with trifluoroacetic acid (TFA)/triisopropylsilane/H20 (90/5/5) for 2 hours (unless other specification is stated), evaporation in vacuo, precipitation with cold ether, lyophilization, and purification with preparative reverse phase high-performance liquid chromatography (RP-HPLC). Compounds were characterized byanalytical HPLC and mass spectrometry (Table 1). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: The peptides are manufactured using Fmoc (9-fluorenylmethyloxycarbonyl) chemistry. Peptides are made using a polystyrene resin, functionalized with an appropriate linker, and the peptides are then manufactured using an lntavis Peptide Synthesizer. A 4-fold excess of amino acid is added relative to the resin and either HATU (O-(7-azabenzotriazol-1 -yl)-N, N, N?, N?-tetramethyluronium hexafluorophosphate)or HCTU (2-(6-Chloro-1 H-benzotriazole-1 -yl)-1 , 1, 3,3-tetramethylaminium hexafluorophosphate) were used at a 3.95-fold excess to create the active ester. Along with an 8-fold excess of DIPEA (N,N-Diisopropylethylamine) as the base, these reagents catalyze the addition of the next amino acid. Once the amino acid is coupled (each cycle includes a double coupling cycle to insure efficient coupling) theresin is exposed to 20% acetic anhydride to terminate (?cap-off?) any peptide chains that have not added the next amino acid.The amino acids are dissolved in NMP (N-Methyl-2- pyrrolidone) or DMF (Dimethylformamide) For washing. Piperidine is used to remove the Fmoc group at theend of each coupling cycle which allows the next amino acid to be added. Similarly the synthesis of BAP modified a-MSH peptide analogues (Example 1)peptides were synthesized using standard Fmoc chemistry using 1-[Bis(dimethylamino)methylene]-1 H-i ,2, 3-triazolo[4, 5-b]pyridinium 3-oxid hexafluorophosphate (HATU) or 2-(6-Chloro-i H-benzotriazole-1 -yl)-l ,1,3,3- tetramethylaminium hexafluorophosphate (HCTU) as the coupling reagents with Hunig?s Base (N,N-diisopropylethylamine, DIPEA). For the lysine branching asdescribed in more detail below, combination of orthogonally protected lysines were used including Fmoc-Lys(MTT)-OH, <strong>[204777-78-6]Fmoc-Lys(ivDde)-OH</strong> , and Fmoc-Lys(Boc)-OH.Peptides were cleaved with standard cleavage cocktails including trifluoroacetic acid, triisoproproylsilane, and water and precipitated with ice-cold ether. All crude peptides were purified by reversed-phase chromatography on columns with C-18 functionalityand using gradients of acetonitrile, deionized water, and trifluoroacetic acid as running buffers. Purity was determined by high-pressure liquid chromatography and mass (MS) and sequence (tandem MS) information was obtained using a nanospray mass spectrometer. BAP attached to lysines in the sequence between the N- and C-terminiMETHOD 2: N - a - Fmoc - N - E - 4 - methyltrityl - L - lysine was added to the peptide sequence, methytrityl was removed after finalizing the sequence and optionally N-terminal acetylation. Appropriate lysine analogues such as Fmoc-Lys(MTT)-OH, FmocLys(ivDde)-OH and Fmoc-Lys(Boc)-OH were sequentially added and selectively deprotected, before acetylation to ensure appropriate side chain and acetyl addition. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Solid phase peptide synthesis was performed on a CEM Liberty Peptide Synthesizer using standard Fmoc chemistry. TentaGel S Ram resin (1 g; 0.25 mmol/g) was swelled in NMP (10 ml) prior to use and transferred between tube and reaction vessel using DCM and NMP. Coupling (0148) An Fmoc-amino acid in NMP/DMF/DCM (1:1:1; 0.2 M; 5 ml) was added to the resin in a CEM Discover microwave unit together with HATU/DMF or COMU/DMF (0.5 M; 2 ml) and DIPEA/NMP (2.0 M; 1 ml). The coupling mixture was heated to 75° C. for 5 min while nitrogen was bubbled through the mixture. The resin was then washed with NMP (4×10 ml). Deprotection (0149) Piperidine/DMF (20percent; 10 ml) was added to the resin for initial deprotection and the mixture was heated by microwaves (30 sec; 40° C.). The reaction vessel was drained and a second portion of piperidine/NMP (20percent; 10 ml) was added and heated (75° C.; 3 min.) again. The resin was then washed with DMF (6×10 ml). Side Chain Acylation (0150) Fmoc-Lys(ivDde)-OH or alternatively another amino acid with an orthogonal side chain protective group was introduced at the position of the acylation. The N-terminal of the peptide backbone was then Boc-protected using Boc2O or alternatively by using a Boc-protected amino acid in the last coupling. While the peptide was still attached to the resin, the orthogonal side chain protective group was selectively cleaved using freshly prepared hydrazine hydrate (2-4percent) in NMP for 2×15 min. The unprotected lysine side chain was first coupled with Fmoc-Glu-OtBu or another spacer amino acid, which was deprotected with piperidine and acylated with a lipophilic moiety using the peptide coupling methodology as described above. Alternatively, the acylation moiety was introduced as a premade building block e.g. Fmoc-Lys(hexadecanoyl-gamma-Glu)-OH where gamm-Glu is the coupling of Glutamic acid through the side-chain. Abbreviations employed are as follows: COMU: 1-[(1-(cyano-2-ethoxy-2-oxoethylideneaminooxy)-dimethylamino-morpholinomethylene)]methanaminium hexaflourophosphate ivDde: 1-(4,4-dimethyl-2,6-dioxocyclohexylidene)3-methyl-butyl Dde: 1-(4,4-dimethyl-2,6-dioxocyclohexylidene)-ethyl DCM: dichloromethane DMF: N,N-dimethylformamide (0151) DIPEA: diisopropylethylamine EtOH: ethanol Et2O: diethyl ether HATU: N-[(dimethylamino)-1H-1,2,3-triazol[4,5-b]pyridine-1-ylmethylene]-N-methylmethanaminium hexafluorophosphate N-oxide MeCN: acetonitrile NMP: N-methylpyrrolidone (0152) TFA: trifluoroacetic acid TIS: triisopropylsilane Cleavage (0153) The resin was washed with EtOH (3×10 ml) and Et2O (3×10 ml) and dried to constant weight at room temperature (r.t.). The crude peptide was cleaved from the resin by treatment with TFA/TIS/water (95/2.5/2.5; 40 ml, 2 h; r.t.). Most of the TFA was removed at reduced pressure and the crude peptide was precipitated and washed three times with diethylether and dried to constant weight at room temperature. HPLC Purification of the Crude Peptide (0154) The crude peptide was purified to greater than 90percent by preparative reverse phase HPLC using a PerSeptive Biosystems VISION Workstation equipped with a C-18 column (5 cm; 10 mum) and a fraction collector and run at 35 ml/min with a gradient of buffer A (0.1percent TFA, aq.) and buffer B (0.1percent TFA, 90percent MeCN, aq.). Fractions were analyzed by analytical HPLC and MS and relevant fractions were pooled and lyophilized. The final product was characterized by HPLC and MS. (0155) The synthesized compounds are shown in Table 1 and Table 2 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: tGLP-1 and its analogues 2?13 were all synthesized using general solid-phase peptide synthesis of N-Fmoc/tBu chemistry. 63Fmoc Rink Amide-MBHA resin (0.1 mmol) was added to a 25 ml peptide synthetic vessel and swollen with DMF for 40 min. After deprotected by 25percent piperidine in DMF, a solution of Fmoc-AA-OH (0.4 mmol), HATU (0.4 mmol), HoAt (0.4 mmol) and DIPEA (0.8 mmol) in DMF was added to the vessel. After reacted for 1 h, the resin was washed three times with DMF and three times with CH2Cl2, then qualitative ninhydrin testing was performed to monitor whether some free amino groups still existed on the resin ornot. If not, the resin was washed three times with DMF again and repeated the procedures of deprotection and coupling. Forthe coupling of some unnatural amino acids, NMM instead of DIPEA and NMP instead of DMF were used. Besides, the reaction time was prolonged to 4 h. Following the final deprotection of N-terminus, the target peptide was cleaved from resin with Reagent K (TFA/thioanisole/water/phenol/EDT, 82.5:5:5:5:2.5) for 2 h atroom temperature. After filtration, the residue solution was concentrated, precipitated with cold diethyl ether and centrifuged for three times. The residue was dissolved in water and purified by Waters 2545 preparative RP-HPLC system. Sephadex G-25 was used for the further purification to remove some short peptide impurities. The molecular mass of the target peptide was confirmed by MALDI-TOF. The purity of peptide was tested with analytical RP-HPLC, and the conditions were as follows: a linear gradient of 20percent mobile phase A and 80percent mobile phase B to 80percent mobile phase A and 20percent mobile phase B (A: acetonitrile containing 0.1percent TFA; B: H2O containing 0.1percent TFA) in 30 min, at a flow rate of 1 mL/minute with UV detection at 214 nm. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
6% | General procedure: The Fmoc-Ala-Wang Resin (0.1mmol/g) was swelled in DCM. The Fmoc group was deprotectedby 20% piperidine in DMF over 2 times. The Fmoc protected amino acid building blocks wereattached to resin by 2-(7-Aza-1H-benzotriazole-1-yl)-1,1,3,3- tetramethyluroniumhexafluorophosphate (HATU, 4 equiv)/1-Hydroxy-7- azabenzotriazole (HOAt, 3.8 equiv) asactivator, N,N-Diisopropylethylamine (DIEA, 8 equiv) as activator base, DMF as solvent for1hour. After coupling all amino acids, the crude peptides were cleaved from resin byTFA/TIS/H2O (88%/6%/6%, v/v/v) for 2 hours, purified by RP-HPLC and identified by ESI-MS.The purification was measured on Shimadzu LC-6AD with preparative C18 column (YMC, Japan,5mum, 20×250 mm), solution A (80% MeCN/H2O with 0.06% TFA) and solution B (100% H2Owith 0.06% TFA). The analysis was measured on Shimadzu LC-2010A with analytic C18 column(YMC, Japan, 5mum, 4.6×150 mm), solution A (80% MeCN/H2O with 0.06% TFA) and solution B(100% H2O with 0.06% TFA). The ESI-MS was measured on Thermo Scientific UltiMate 3000.After RP-HPLC purification, the peptide was obtained by lyophilization. The lyophilizedglycopeptides were redissolved in MeOH/MeONa solution with pH 9.5 to deprotect the acetylgroup on carbohydrate. The glycopeptide was obtained by further RP-HPLC purification andlyophilization. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
7% | General procedure: The Fmoc-Ala-Wang Resin (0.1mmol/g) was swelled in DCM. The Fmoc group was deprotectedby 20% piperidine in DMF over 2 times. The Fmoc protected amino acid building blocks wereattached to resin by 2-(7-Aza-1H-benzotriazole-1-yl)-1,1,3,3- tetramethyluroniumhexafluorophosphate (HATU, 4 equiv)/1-Hydroxy-7- azabenzotriazole (HOAt, 3.8 equiv) asactivator, N,N-Diisopropylethylamine (DIEA, 8 equiv) as activator base, DMF as solvent for1hour. After coupling all amino acids, the crude peptides were cleaved from resin byTFA/TIS/H2O (88%/6%/6%, v/v/v) for 2 hours, purified by RP-HPLC and identified by ESI-MS.The purification was measured on Shimadzu LC-6AD with preparative C18 column (YMC, Japan,5mum, 20×250 mm), solution A (80% MeCN/H2O with 0.06% TFA) and solution B (100% H2Owith 0.06% TFA). The analysis was measured on Shimadzu LC-2010A with analytic C18 column(YMC, Japan, 5mum, 4.6×150 mm), solution A (80% MeCN/H2O with 0.06% TFA) and solution B(100% H2O with 0.06% TFA). The ESI-MS was measured on Thermo Scientific UltiMate 3000.After RP-HPLC purification, the peptide was obtained by lyophilization. The lyophilizedglycopeptides were redissolved in MeOH/MeONa solution with pH 9.5 to deprotect the acetylgroup on carbohydrate. The glycopeptide was obtained by further RP-HPLC purification andlyophilization. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: 350 mg of the beads (1.0 x 106 beads) were split equally to distribute into15 reaction vessels and the beads in each reaction vessel (23 mg, 6.6 x 104 beads) was treated with 6 equivalent ofFmoc-aa-OH (36 mumol), 6 equivalent of Oxyma (36 mumol, 5.1 mg), and 6 equivalent of DIC (36 mumol, 5.7 muL) in 182muL of DMF subjected to coupling of one of the following 15 amino acids; Fmoc-D-Ala-OH, Fmoc-D-Asp-OH,Fmoc-D-Glu-OH, Fmoc-D-Phe-OH, Fmoc-D-His(Trt)-OH, Fmoc-D-Lys(Boc)-OH, Fmoc-D-Leu-OH,Fmoc-D-Asn(Trt)-OH, Fmoc-D-Gln(Trt)-OH, Fmoc-D-Ser(OtBu)-OH, Fmoc-D-Thr(OtBu)-OH, Fmoc-D-Val-OH,Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. The coupling reaction was carried out at RT for2-4 h with gentle shaking. The beads were washed with DMF three times. The beads were pooled and mixed. Fmocgroup was deprotected by exposing resin to 20% piperidine in DMF. First resin was treated with 20% piperidine in DMFfor 3 min then with fresh 20% piperidine in DMF for 12 min. The beads were washed with DMF three times. Thisprocedure of split, coupling, mix, and Fmoc deprotection was repeated 12 times to synthesize 12-mer random peptides.For X3, X7, X11 residues, beads were split into 7 reaction vessels and the following seven amino acids, instead of theabovementioned 15 remino acids, were used for coupling; Fmoc-D-Ala-OH, Fmoc-D-Phe-OH, Fmoc-D-Leu-OH,Fmoc-D-Val-OH, Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. After completion of the 12thresidue, beads were mixed and stored at -20 C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: 350 mg of the beads (1.0 x 106 beads) were split equally to distribute into15 reaction vessels and the beads in each reaction vessel (23 mg, 6.6 x 104 beads) was treated with 6 equivalent ofFmoc-aa-OH (36 mumol), 6 equivalent of Oxyma (36 mumol, 5.1 mg), and 6 equivalent of DIC (36 mumol, 5.7 muL) in 182muL of DMF subjected to coupling of one of the following 15 amino acids; Fmoc-D-Ala-OH, Fmoc-D-Asp-OH,Fmoc-D-Glu-OH, Fmoc-D-Phe-OH, Fmoc-D-His(Trt)-OH, Fmoc-D-Lys(Boc)-OH, Fmoc-D-Leu-OH,Fmoc-D-Asn(Trt)-OH, Fmoc-D-Gln(Trt)-OH, Fmoc-D-Ser(OtBu)-OH, Fmoc-D-Thr(OtBu)-OH, Fmoc-D-Val-OH,Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. The coupling reaction was carried out at RT for2-4 h with gentle shaking. The beads were washed with DMF three times. The beads were pooled and mixed. Fmocgroup was deprotected by exposing resin to 20% piperidine in DMF. First resin was treated with 20% piperidine in DMFfor 3 min then with fresh 20% piperidine in DMF for 12 min. The beads were washed with DMF three times. Thisprocedure of split, coupling, mix, and Fmoc deprotection was repeated 12 times to synthesize 12-mer random peptides.For X3, X7, X11 residues, beads were split into 7 reaction vessels and the following seven amino acids, instead of theabovementioned 15 remino acids, were used for coupling; Fmoc-D-Ala-OH, Fmoc-D-Phe-OH, Fmoc-D-Leu-OH,Fmoc-D-Val-OH, Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. After completion of the 12thresidue, beads were mixed and stored at -20 C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: 350 mg of the beads (1.0 x 106 beads) were split equally to distribute into15 reaction vessels and the beads in each reaction vessel (23 mg, 6.6 x 104 beads) was treated with 6 equivalent ofFmoc-aa-OH (36 mumol), 6 equivalent of Oxyma (36 mumol, 5.1 mg), and 6 equivalent of DIC (36 mumol, 5.7 muL) in 182muL of DMF subjected to coupling of one of the following 15 amino acids; Fmoc-D-Ala-OH, Fmoc-D-Asp-OH,Fmoc-D-Glu-OH, Fmoc-D-Phe-OH, Fmoc-D-His(Trt)-OH, Fmoc-D-Lys(Boc)-OH, Fmoc-D-Leu-OH,Fmoc-D-Asn(Trt)-OH, Fmoc-D-Gln(Trt)-OH, Fmoc-D-Ser(OtBu)-OH, Fmoc-D-Thr(OtBu)-OH, Fmoc-D-Val-OH,Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. The coupling reaction was carried out at RT for2-4 h with gentle shaking. The beads were washed with DMF three times. The beads were pooled and mixed. Fmocgroup was deprotected by exposing resin to 20% piperidine in DMF. First resin was treated with 20% piperidine in DMFfor 3 min then with fresh 20% piperidine in DMF for 12 min. The beads were washed with DMF three times. Thisprocedure of split, coupling, mix, and Fmoc deprotection was repeated 12 times to synthesize 12-mer random peptides.For X3, X7, X11 residues, beads were split into 7 reaction vessels and the following seven amino acids, instead of theabovementioned 15 remino acids, were used for coupling; Fmoc-D-Ala-OH, Fmoc-D-Phe-OH, Fmoc-D-Leu-OH,Fmoc-D-Val-OH, Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. After completion of the 12thresidue, beads were mixed and stored at -20 C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: 350 mg of the beads (1.0 x 106 beads) were split equally to distribute into15 reaction vessels and the beads in each reaction vessel (23 mg, 6.6 x 104 beads) was treated with 6 equivalent ofFmoc-aa-OH (36 mumol), 6 equivalent of Oxyma (36 mumol, 5.1 mg), and 6 equivalent of DIC (36 mumol, 5.7 muL) in 182muL of DMF subjected to coupling of one of the following 15 amino acids; Fmoc-D-Ala-OH, Fmoc-D-Asp-OH,Fmoc-D-Glu-OH, Fmoc-D-Phe-OH, Fmoc-D-His(Trt)-OH, Fmoc-D-Lys(Boc)-OH, Fmoc-D-Leu-OH,Fmoc-D-Asn(Trt)-OH, Fmoc-D-Gln(Trt)-OH, Fmoc-D-Ser(OtBu)-OH, Fmoc-D-Thr(OtBu)-OH, Fmoc-D-Val-OH,Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. The coupling reaction was carried out at RT for2-4 h with gentle shaking. The beads were washed with DMF three times. The beads were pooled and mixed. Fmocgroup was deprotected by exposing resin to 20% piperidine in DMF. First resin was treated with 20% piperidine in DMFfor 3 min then with fresh 20% piperidine in DMF for 12 min. The beads were washed with DMF three times. Thisprocedure of split, coupling, mix, and Fmoc deprotection was repeated 12 times to synthesize 12-mer random peptides.For X3, X7, X11 residues, beads were split into 7 reaction vessels and the following seven amino acids, instead of theabovementioned 15 remino acids, were used for coupling; Fmoc-D-Ala-OH, Fmoc-D-Phe-OH, Fmoc-D-Leu-OH,Fmoc-D-Val-OH, Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. After completion of the 12thresidue, beads were mixed and stored at -20 C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: 350 mg of the beads (1.0 x 106 beads) were split equally to distribute into15 reaction vessels and the beads in each reaction vessel (23 mg, 6.6 x 104 beads) was treated with 6 equivalent ofFmoc-aa-OH (36 mumol), 6 equivalent of Oxyma (36 mumol, 5.1 mg), and 6 equivalent of DIC (36 mumol, 5.7 muL) in 182muL of DMF subjected to coupling of one of the following 15 amino acids; Fmoc-D-Ala-OH, Fmoc-D-Asp-OH,Fmoc-D-Glu-OH, Fmoc-D-Phe-OH, Fmoc-D-His(Trt)-OH, Fmoc-D-Lys(Boc)-OH, Fmoc-D-Leu-OH,Fmoc-D-Asn(Trt)-OH, Fmoc-D-Gln(Trt)-OH, Fmoc-D-Ser(OtBu)-OH, Fmoc-D-Thr(OtBu)-OH, Fmoc-D-Val-OH,Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. The coupling reaction was carried out at RT for2-4 h with gentle shaking. The beads were washed with DMF three times. The beads were pooled and mixed. Fmocgroup was deprotected by exposing resin to 20% piperidine in DMF. First resin was treated with 20% piperidine in DMFfor 3 min then with fresh 20% piperidine in DMF for 12 min. The beads were washed with DMF three times. Thisprocedure of split, coupling, mix, and Fmoc deprotection was repeated 12 times to synthesize 12-mer random peptides.For X3, X7, X11 residues, beads were split into 7 reaction vessels and the following seven amino acids, instead of theabovementioned 15 remino acids, were used for coupling; Fmoc-D-Ala-OH, Fmoc-D-Phe-OH, Fmoc-D-Leu-OH,Fmoc-D-Val-OH, Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. After completion of the 12thresidue, beads were mixed and stored at -20 C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: 350 mg of the beads (1.0 x 106 beads) were split equally to distribute into15 reaction vessels and the beads in each reaction vessel (23 mg, 6.6 x 104 beads) was treated with 6 equivalent ofFmoc-aa-OH (36 mumol), 6 equivalent of Oxyma (36 mumol, 5.1 mg), and 6 equivalent of DIC (36 mumol, 5.7 muL) in 182muL of DMF subjected to coupling of one of the following 15 amino acids; Fmoc-D-Ala-OH, Fmoc-D-Asp-OH,Fmoc-D-Glu-OH, Fmoc-D-Phe-OH, Fmoc-D-His(Trt)-OH, Fmoc-D-Lys(Boc)-OH, Fmoc-D-Leu-OH,Fmoc-D-Asn(Trt)-OH, Fmoc-D-Gln(Trt)-OH, Fmoc-D-Ser(OtBu)-OH, Fmoc-D-Thr(OtBu)-OH, Fmoc-D-Val-OH,Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. The coupling reaction was carried out at RT for2-4 h with gentle shaking. The beads were washed with DMF three times. The beads were pooled and mixed. Fmocgroup was deprotected by exposing resin to 20% piperidine in DMF. First resin was treated with 20% piperidine in DMFfor 3 min then with fresh 20% piperidine in DMF for 12 min. The beads were washed with DMF three times. Thisprocedure of split, coupling, mix, and Fmoc deprotection was repeated 12 times to synthesize 12-mer random peptides.For X3, X7, X11 residues, beads were split into 7 reaction vessels and the following seven amino acids, instead of theabovementioned 15 remino acids, were used for coupling; Fmoc-D-Ala-OH, Fmoc-D-Phe-OH, Fmoc-D-Leu-OH,Fmoc-D-Val-OH, Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. After completion of the 12thresidue, beads were mixed and stored at -20 C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: 350 mg of the beads (1.0 x 106 beads) were split equally to distribute into15 reaction vessels and the beads in each reaction vessel (23 mg, 6.6 x 104 beads) was treated with 6 equivalent ofFmoc-aa-OH (36 mumol), 6 equivalent of Oxyma (36 mumol, 5.1 mg), and 6 equivalent of DIC (36 mumol, 5.7 muL) in 182muL of DMF subjected to coupling of one of the following 15 amino acids; Fmoc-D-Ala-OH, Fmoc-D-Asp-OH,Fmoc-D-Glu-OH, Fmoc-D-Phe-OH, Fmoc-D-His(Trt)-OH, Fmoc-D-Lys(Boc)-OH, Fmoc-D-Leu-OH,Fmoc-D-Asn(Trt)-OH, Fmoc-D-Gln(Trt)-OH, Fmoc-D-Ser(OtBu)-OH, Fmoc-D-Thr(OtBu)-OH, Fmoc-D-Val-OH,Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. The coupling reaction was carried out at RT for2-4 h with gentle shaking. The beads were washed with DMF three times. The beads were pooled and mixed. Fmocgroup was deprotected by exposing resin to 20% piperidine in DMF. First resin was treated with 20% piperidine in DMFfor 3 min then with fresh 20% piperidine in DMF for 12 min. The beads were washed with DMF three times. Thisprocedure of split, coupling, mix, and Fmoc deprotection was repeated 12 times to synthesize 12-mer random peptides.For X3, X7, X11 residues, beads were split into 7 reaction vessels and the following seven amino acids, instead of theabovementioned 15 remino acids, were used for coupling; Fmoc-D-Ala-OH, Fmoc-D-Phe-OH, Fmoc-D-Leu-OH,Fmoc-D-Val-OH, Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. After completion of the 12thresidue, beads were mixed and stored at -20 C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: 350 mg of the beads (1.0 x 106 beads) were split equally to distribute into15 reaction vessels and the beads in each reaction vessel (23 mg, 6.6 x 104 beads) was treated with 6 equivalent ofFmoc-aa-OH (36 mumol), 6 equivalent of Oxyma (36 mumol, 5.1 mg), and 6 equivalent of DIC (36 mumol, 5.7 muL) in 182muL of DMF subjected to coupling of one of the following 15 amino acids; Fmoc-D-Ala-OH, Fmoc-D-Asp-OH,Fmoc-D-Glu-OH, Fmoc-D-Phe-OH, Fmoc-D-His(Trt)-OH, Fmoc-D-Lys(Boc)-OH, Fmoc-D-Leu-OH,Fmoc-D-Asn(Trt)-OH, Fmoc-D-Gln(Trt)-OH, Fmoc-D-Ser(OtBu)-OH, Fmoc-D-Thr(OtBu)-OH, Fmoc-D-Val-OH,Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. The coupling reaction was carried out at RT for2-4 h with gentle shaking. The beads were washed with DMF three times. The beads were pooled and mixed. Fmocgroup was deprotected by exposing resin to 20% piperidine in DMF. First resin was treated with 20% piperidine in DMFfor 3 min then with fresh 20% piperidine in DMF for 12 min. The beads were washed with DMF three times. Thisprocedure of split, coupling, mix, and Fmoc deprotection was repeated 12 times to synthesize 12-mer random peptides.For X3, X7, X11 residues, beads were split into 7 reaction vessels and the following seven amino acids, instead of theabovementioned 15 remino acids, were used for coupling; Fmoc-D-Ala-OH, Fmoc-D-Phe-OH, Fmoc-D-Leu-OH,Fmoc-D-Val-OH, Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. After completion of the 12thresidue, beads were mixed and stored at -20 C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: 350 mg of the beads (1.0 x 106 beads) were split equally to distribute into15 reaction vessels and the beads in each reaction vessel (23 mg, 6.6 x 104 beads) was treated with 6 equivalent ofFmoc-aa-OH (36 mumol), 6 equivalent of Oxyma (36 mumol, 5.1 mg), and 6 equivalent of DIC (36 mumol, 5.7 muL) in 182muL of DMF subjected to coupling of one of the following 15 amino acids; Fmoc-D-Ala-OH, Fmoc-D-Asp-OH,Fmoc-D-Glu-OH, Fmoc-D-Phe-OH, Fmoc-D-His(Trt)-OH, Fmoc-D-Lys(Boc)-OH, Fmoc-D-Leu-OH,Fmoc-D-Asn(Trt)-OH, Fmoc-D-Gln(Trt)-OH, Fmoc-D-Ser(OtBu)-OH, Fmoc-D-Thr(OtBu)-OH, Fmoc-D-Val-OH,Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. The coupling reaction was carried out at RT for2-4 h with gentle shaking. The beads were washed with DMF three times. The beads were pooled and mixed. Fmocgroup was deprotected by exposing resin to 20% piperidine in DMF. First resin was treated with 20% piperidine in DMFfor 3 min then with fresh 20% piperidine in DMF for 12 min. The beads were washed with DMF three times. Thisprocedure of split, coupling, mix, and Fmoc deprotection was repeated 12 times to synthesize 12-mer random peptides.For X3, X7, X11 residues, beads were split into 7 reaction vessels and the following seven amino acids, instead of theabovementioned 15 remino acids, were used for coupling; Fmoc-D-Ala-OH, Fmoc-D-Phe-OH, Fmoc-D-Leu-OH,Fmoc-D-Val-OH, Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. After completion of the 12thresidue, beads were mixed and stored at -20 C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: 350 mg of the beads (1.0 x 106 beads) were split equally to distribute into15 reaction vessels and the beads in each reaction vessel (23 mg, 6.6 x 104 beads) was treated with 6 equivalent ofFmoc-aa-OH (36 mumol), 6 equivalent of Oxyma (36 mumol, 5.1 mg), and 6 equivalent of DIC (36 mumol, 5.7 muL) in 182muL of DMF subjected to coupling of one of the following 15 amino acids; Fmoc-D-Ala-OH, Fmoc-D-Asp-OH,Fmoc-D-Glu-OH, Fmoc-D-Phe-OH, Fmoc-D-His(Trt)-OH, Fmoc-D-Lys(Boc)-OH, Fmoc-D-Leu-OH,Fmoc-D-Asn(Trt)-OH, Fmoc-D-Gln(Trt)-OH, Fmoc-D-Ser(OtBu)-OH, Fmoc-D-Thr(OtBu)-OH, Fmoc-D-Val-OH,Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. The coupling reaction was carried out at RT for2-4 h with gentle shaking. The beads were washed with DMF three times. The beads were pooled and mixed. Fmocgroup was deprotected by exposing resin to 20% piperidine in DMF. First resin was treated with 20% piperidine in DMFfor 3 min then with fresh 20% piperidine in DMF for 12 min. The beads were washed with DMF three times. Thisprocedure of split, coupling, mix, and Fmoc deprotection was repeated 12 times to synthesize 12-mer random peptides.For X3, X7, X11 residues, beads were split into 7 reaction vessels and the following seven amino acids, instead of theabovementioned 15 remino acids, were used for coupling; Fmoc-D-Ala-OH, Fmoc-D-Phe-OH, Fmoc-D-Leu-OH,Fmoc-D-Val-OH, Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. After completion of the 12thresidue, beads were mixed and stored at -20 C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: 350 mg of the beads (1.0 x 106 beads) were split equally to distribute into15 reaction vessels and the beads in each reaction vessel (23 mg, 6.6 x 104 beads) was treated with 6 equivalent ofFmoc-aa-OH (36 mumol), 6 equivalent of Oxyma (36 mumol, 5.1 mg), and 6 equivalent of DIC (36 mumol, 5.7 muL) in 182muL of DMF subjected to coupling of one of the following 15 amino acids; Fmoc-D-Ala-OH, Fmoc-D-Asp-OH,Fmoc-D-Glu-OH, Fmoc-D-Phe-OH, Fmoc-D-His(Trt)-OH, Fmoc-D-Lys(Boc)-OH, Fmoc-D-Leu-OH,Fmoc-D-Asn(Trt)-OH, Fmoc-D-Gln(Trt)-OH, Fmoc-D-Ser(OtBu)-OH, Fmoc-D-Thr(OtBu)-OH, Fmoc-D-Val-OH,Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. The coupling reaction was carried out at RT for2-4 h with gentle shaking. The beads were washed with DMF three times. The beads were pooled and mixed. Fmocgroup was deprotected by exposing resin to 20% piperidine in DMF. First resin was treated with 20% piperidine in DMFfor 3 min then with fresh 20% piperidine in DMF for 12 min. The beads were washed with DMF three times. Thisprocedure of split, coupling, mix, and Fmoc deprotection was repeated 12 times to synthesize 12-mer random peptides.For X3, X7, X11 residues, beads were split into 7 reaction vessels and the following seven amino acids, instead of theabovementioned 15 remino acids, were used for coupling; Fmoc-D-Ala-OH, Fmoc-D-Phe-OH, Fmoc-D-Leu-OH,Fmoc-D-Val-OH, Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. After completion of the 12thresidue, beads were mixed and stored at -20 C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: 350 mg of the beads (1.0 x 106 beads) were split equally to distribute into15 reaction vessels and the beads in each reaction vessel (23 mg, 6.6 x 104 beads) was treated with 6 equivalent ofFmoc-aa-OH (36 mumol), 6 equivalent of Oxyma (36 mumol, 5.1 mg), and 6 equivalent of DIC (36 mumol, 5.7 muL) in 182muL of DMF subjected to coupling of one of the following 15 amino acids; Fmoc-D-Ala-OH, Fmoc-D-Asp-OH,Fmoc-D-Glu-OH, Fmoc-D-Phe-OH, Fmoc-D-His(Trt)-OH, Fmoc-D-Lys(Boc)-OH, Fmoc-D-Leu-OH,Fmoc-D-Asn(Trt)-OH, Fmoc-D-Gln(Trt)-OH, Fmoc-D-Ser(OtBu)-OH, Fmoc-D-Thr(OtBu)-OH, Fmoc-D-Val-OH,Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. The coupling reaction was carried out at RT for2-4 h with gentle shaking. The beads were washed with DMF three times. The beads were pooled and mixed. Fmocgroup was deprotected by exposing resin to 20% piperidine in DMF. First resin was treated with 20% piperidine in DMFfor 3 min then with fresh 20% piperidine in DMF for 12 min. The beads were washed with DMF three times. Thisprocedure of split, coupling, mix, and Fmoc deprotection was repeated 12 times to synthesize 12-mer random peptides.For X3, X7, X11 residues, beads were split into 7 reaction vessels and the following seven amino acids, instead of theabovementioned 15 remino acids, were used for coupling; Fmoc-D-Ala-OH, Fmoc-D-Phe-OH, Fmoc-D-Leu-OH,Fmoc-D-Val-OH, Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. After completion of the 12thresidue, beads were mixed and stored at -20 C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: 350 mg of the beads (1.0 x 106 beads) were split equally to distribute into15 reaction vessels and the beads in each reaction vessel (23 mg, 6.6 x 104 beads) was treated with 6 equivalent ofFmoc-aa-OH (36 mumol), 6 equivalent of Oxyma (36 mumol, 5.1 mg), and 6 equivalent of DIC (36 mumol, 5.7 muL) in 182muL of DMF subjected to coupling of one of the following 15 amino acids; Fmoc-D-Ala-OH, Fmoc-D-Asp-OH,Fmoc-D-Glu-OH, Fmoc-D-Phe-OH, Fmoc-D-His(Trt)-OH, Fmoc-D-Lys(Boc)-OH, Fmoc-D-Leu-OH,Fmoc-D-Asn(Trt)-OH, Fmoc-D-Gln(Trt)-OH, Fmoc-D-Ser(OtBu)-OH, Fmoc-D-Thr(OtBu)-OH, Fmoc-D-Val-OH,Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. The coupling reaction was carried out at RT for2-4 h with gentle shaking. The beads were washed with DMF three times. The beads were pooled and mixed. Fmocgroup was deprotected by exposing resin to 20% piperidine in DMF. First resin was treated with 20% piperidine in DMFfor 3 min then with fresh 20% piperidine in DMF for 12 min. The beads were washed with DMF three times. Thisprocedure of split, coupling, mix, and Fmoc deprotection was repeated 12 times to synthesize 12-mer random peptides.For X3, X7, X11 residues, beads were split into 7 reaction vessels and the following seven amino acids, instead of theabovementioned 15 remino acids, were used for coupling; Fmoc-D-Ala-OH, Fmoc-D-Phe-OH, Fmoc-D-Leu-OH,Fmoc-D-Val-OH, Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. After completion of the 12thresidue, beads were mixed and stored at -20 C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: 350 mg of the beads (1.0 x 106 beads) were split equally to distribute into15 reaction vessels and the beads in each reaction vessel (23 mg, 6.6 x 104 beads) was treated with 6 equivalent ofFmoc-aa-OH (36 mumol), 6 equivalent of Oxyma (36 mumol, 5.1 mg), and 6 equivalent of DIC (36 mumol, 5.7 muL) in 182muL of DMF subjected to coupling of one of the following 15 amino acids; Fmoc-D-Ala-OH, Fmoc-D-Asp-OH,Fmoc-D-Glu-OH, Fmoc-D-Phe-OH, Fmoc-D-His(Trt)-OH, Fmoc-D-Lys(Boc)-OH, Fmoc-D-Leu-OH,Fmoc-D-Asn(Trt)-OH, Fmoc-D-Gln(Trt)-OH, Fmoc-D-Ser(OtBu)-OH, Fmoc-D-Thr(OtBu)-OH, Fmoc-D-Val-OH,Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. The coupling reaction was carried out at RT for2-4 h with gentle shaking. The beads were washed with DMF three times. The beads were pooled and mixed. Fmocgroup was deprotected by exposing resin to 20% piperidine in DMF. First resin was treated with 20% piperidine in DMFfor 3 min then with fresh 20% piperidine in DMF for 12 min. The beads were washed with DMF three times. Thisprocedure of split, coupling, mix, and Fmoc deprotection was repeated 12 times to synthesize 12-mer random peptides.For X3, X7, X11 residues, beads were split into 7 reaction vessels and the following seven amino acids, instead of theabovementioned 15 remino acids, were used for coupling; Fmoc-D-Ala-OH, Fmoc-D-Phe-OH, Fmoc-D-Leu-OH,Fmoc-D-Val-OH, Fmoc-D-Trp(Boc)-OH, Fmoc-D-Tyr(OtBu)-OH, and Fmoc-Aib-OH. After completion of the 12thresidue, beads were mixed and stored at -20 C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: 71.4 mg (0.10 mmol) of 2-chlorotrityl chloride resin (resin loaded with 1.4 mmol per gram) purchased from Novabiochem corporation was weighed into a reaction vessel. The resin was solubilized with 3 ml of DMF and sufficiently swollen for 5 minutes, then 3 ml of a 20% (w / v) piperidine DMF solution was added, shaking for 10 minutes, and a solution of piperidine DMF After removing, it was washed 5 times with 10 ml of DMF solvent (washing 5 times in 10 ml). * DMF: Dimethylformamide. Fmoc-Ser (Trt) -OH (468.6 mg, 0.80 mmol), HOBt (108.1 mg, 0.80 mmol) and DIC (0.124 mL, 0.80 mmol) were completely dissolved in 2 mL of DMF solvent and then added to the resin. The reaction solution was shaken at room temperature for 8 hours and then washed 5 times with 10 ml of DMF solvent. 3 ml of a 20% (w / v) piperidine DMF solution was added, shaking the mixture for 10 minutes, removing the piperidine solution, adding a 20% (w / v) piperidine DMF solution, After the reaction, the Fmoc protecting group protected by the resin was completely removed and washed 5 times with 10 ml of DMF solvent (5 times in 10 ml portions). At this stage, the deprotection of the Fmoc protecting group was carried out using the Kaiser test [E. Kaiser et al. Anal. Biochem., 1970, 34 (2), 595-598). * Fmoc: 9-fluorenylmethyloxycarbonyl / HOBt: 1-hydroxybenzotriazole / DIC: N, N'-diisopropylcarbodiimide. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: 71.4 mg (0.10 mmol) of 2-chlorotrityl chloride resin (resin loaded with 1.4 mmol per gram) purchased from Novabiochem corporation was weighed into a reaction vessel. The resin was solubilized with 3 ml of DMF and sufficiently swollen for 5 minutes, then 3 ml of a 20% (w / v) piperidine DMF solution was added, shaking for 10 minutes, and a solution of piperidine DMF After removing, it was washed 5 times with 10 ml of DMF solvent (washing 5 times in 10 ml). * DMF: Dimethylformamide. Fmoc-Ser (Trt) -OH (468.6 mg, 0.80 mmol), HOBt (108.1 mg, 0.80 mmol) and DIC (0.124 mL, 0.80 mmol) were completely dissolved in 2 mL of DMF solvent and then added to the resin. The reaction solution was shaken at room temperature for 8 hours and then washed 5 times with 10 ml of DMF solvent. 3 ml of a 20% (w / v) piperidine DMF solution was added, shaking the mixture for 10 minutes, removing the piperidine solution, adding a 20% (w / v) piperidine DMF solution, After the reaction, the Fmoc protecting group protected by the resin was completely removed and washed 5 times with 10 ml of DMF solvent (5 times in 10 ml portions). At this stage, the deprotection of the Fmoc protecting group was carried out using the Kaiser test [E. Kaiser et al. Anal. Biochem., 1970, 34 (2), 595-598). * Fmoc: 9-fluorenylmethyloxycarbonyl / HOBt: 1-hydroxybenzotriazole / DIC: N, N'-diisopropylcarbodiimide. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
84% | General procedure: Peptides 4 and 5 were synthesized using standard SPPS on Rink Amide high yield resin (loading=0.45mmol/g). The beads were swollen in DMF for 1 hr prior to coupling. Each peptide bond formation was done with 3eq. of the Fmoc protected amino acid, 3eq. of COMU coupling reagent, and 6eq. of DIEA in DMF. Reaction was mixed constantly at room temperature for 30-60min and monitored by Kaiser test. Beads were washed with DMF (3×) MeOH (3×) DMF (3×) after coupling. The N-terminus Fmoc deprotection was done in 1:4 piperidine:DMF mixed constantly for 30min at room temperature. Beads were washed with DMF (6×) after deprotection. The peptide was cleaved from the bead using the cleavage cocktail TFA:H2O:TIPS=95:2.5:2.5 by volume. The TFA was evaporated and cold diethyl ether was added to precipitate peptide. The solution was centrifuged at 4000rpm at 4C for 10min and decanted (3× in cold ether). The peptide was dissolved in water for reverse-phase HPLC purification (ACN/H2O). 4.5.1. (Propargyl)-AdE (4) 1H NMR (D2O 600MHz): delta 4.41 (dd, 1H, J=9.6, 4.8Hz), 4.21 (t, 1H, J=6.0Hz) 2.92 (m, 2H), 2.60 (app. d, 1H), 2.41-2.50 (m, 2H), 2.12-2.18 (m, 1H), 1.94-2.01 (m, 1H) 13C NMR (D2O, 150MHz): delta 178.1, 175.6, 168.3, 76.1, 74.3, 53.0, 51.4, 30.9, 26.6, 20.9, HRMS (ESI) calculated (M+H) 242.1135, found 242.1151. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
80% | General procedure: Peptides 4 and 5 were synthesized using standard SPPS on Rink Amide high yield resin (loading=0.45mmol/g). The beads were swollen in DMF for 1 hr prior to coupling. Each peptide bond formation was done with 3eq. of the Fmoc protected amino acid, 3eq. of COMU coupling reagent, and 6eq. of DIEA in DMF. Reaction was mixed constantly at room temperature for 30-60min and monitored by Kaiser test. Beads were washed with DMF (3×) MeOH (3×) DMF (3×) after coupling. The N-terminus Fmoc deprotection was done in 1:4 piperidine:DMF mixed constantly for 30min at room temperature. Beads were washed with DMF (6×) after deprotection. The peptide was cleaved from the bead using the cleavage cocktail TFA:H2O:TIPS=95:2.5:2.5 by volume. The TFA was evaporated and cold diethyl ether was added to precipitate peptide. The solution was centrifuged at 4000rpm at 4C for 10min and decanted (3× in cold ether). The peptide was dissolved in water for reverse-phase HPLC purification (ACN/H2O). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: Sufficient quantity (50-100 mg) of Fmoc-PAL-PEG-PS resin or Fmoc-Rink amide MB HA resin, loading: 0.5-0.6 mmol/g was swelled in DMF (1-10 ml /100 mg of resin) for 2-10 minutes. The Fmoc-group on resin was removed by incubation of resin with 10-30 % piperidine in DMF (10- 30 ml / 100 mg of resin), for 10-30 minutes. Deprotected resin was filtered and washed excess of DMF, DCM and ether (50 ml X 4). Washed resin was incubated in freshly distilled DMF (1 ml / 100 mg of resin), under nitrogen atmosphere for 5 minutes. A 0.5 M solution of first Fmoc- protected amino acid (1-3 eq.), pre-activated with HOBt (1-3 eq.) and DIPCDI (1-2 eq.) in DMF was added to the resin, and the resin was then shaken for 1-3 hrs, under nitrogen atmosphere. Coupling completion was monitored using a qualitative ninhydrin test. After the coupling of first amino acid, the resin was washed with DMF, DCM and Diethyl ether (50 ml X 4). For the coupling of next amino acid, firstly, the Fmoc-protection on first amino acid, coupled with resin was deprotected, using a 10-20% piperidine solution, followed by the coupling the Fmoc- protected second amino acid, using a suitable coupling agents, and as described above. The repeated cycles of deprotection, washing, coupling and washing were performed until the desired peptide chain was assembled on resin, as per general (Scheme 1) above. Finally, the Fmoc- protected peptidyl-resin prepared above was deprotected by 20% piperidine treatment as described above and the peptidyl-resins were washed with DMF, DCM and Diethyl ether. Resin containing desired peptide was dried under nitrogen pressure for 10-15 minutes and subjected for cleavage/ deprotection. Using above protocol and suitable variations thereof which are within the scope of a person skilled in the art, the short chain peptides designed in the present invention were prepared, using Fmoc-SPPS approach. Furthermore, resin bound short chain peptides were cleaved and deprotected, purified and characterized using following protocol. CLEAVAGE AND DEPROTECTION: The desired short chain peptides were cleaved and deprotected from their respective peptidyl- resins by treatment with TFA cleavage mixture as follows. A solution of TFA / Water / Triisopropylsilane (95: 2.5: 2.5) (10 ml / 100 mg of peptidyl-resin) was added to peptidyl-resins and the mixture was kept at room temperature with occasional starring. The resin was filtered, washed with a cleavage mixture and the combined filtrate was evaporated to dryness. Residue obtained was dissolved in 10 ml of water and the aqueous layer was extracted 3 times with ether and finally the aqueous layer was freeze-dried. Crude peptide obtained after freeze-drying was purified by preparative HPLC as follows: PREPARATIVE HPLC PURIFICATION OF THE CRUDE SHORT CHAIN PEPTIDES: Preparative HPLC was carried out on a Shimadzu LC-8A liquid chromatography. A solution of crude peptide dissolved in DMF or water was injected into a semi-Prep column (Luna 10mu; C18; 100 A0), dimension 250 X 50 mm and eluted with a linear gradient of ACN in water, both buffered with 0.1 % TFA, using a flow rate of 15 -50 ml / min, with effluent monitoring by PDA detector at 220 nm. A typical gradient of 20 % to 70 % of water- ACN mixture, buffered with 0.1 % TFA was used, over a period of 50 minutes, with 1% gradient change per minute. The desired product eluted were collected in a single 10-20 ml fraction and pure short chain peptides were obtained as amorphous white powders by lyophilisation of respective HPLC fractions. HPLC ANALYSIS OF THE PURIFIED SHORT-CHAIN PEPTIDES After purification by preparative HPLC as described above, each peptide was analyzed by analytical RP-HPLC on a Shimadzu LC-10AD analytical HPLC system. For analytical HPLC analysis of short chain peptides, Luna 5mu; C18; 100 A , dimension 250 X 4.6 mm column was used, with a linear gradient of 0.1 % TFA and ACN buffer and the acquisition of chromatogram was carried out at 220 nm, using a PDA detector. CHARACTERIZATION BY MASS SPECTROMETRY Each peptide was characterized by electrospray ionisation mass spectrometry (ESI-MS), either in flow injection or LC/MS mode. Triple quadrupole mass spectrometers (API-3000 (MDS-SCIES, Canada) was used in all analyses in positive and negative ion electrospray mode. Full scan data was acquired over the mass range of quadrupole, operated at unit resolution. In all cases, the experimentally measured molecular weight was within 0.5 Daltons of the calculated monoisotopic molecular weight. Quantification of the mass chromatogram was done using Analyst 1.4.1 software. Following table l(i) is the list of short chain peptides synthesized using the SPPS approach as described above. Mentioned Seq. ID. No 1 in the list was taken as a reference from WO 2011027257. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: [0149] The synthetic scheme of SILY-DBCO is shown in FIGS. 1A and 1B. Fmoc-SILY-k was first synthesized by standard solid phase peptide synthesis (SSPS) approach, followed by DBCO coupling in solution phase with DBCO-OSu. Rink amide MBHA resin (1.0 g, 0.503 mmol, loading 0.503mmol/g) was swollen in DMF for 3 hours before Fmoc-deprotection. Protected Fmoc/Dde-SILY-k(Boc) beads were prepared with automated peptide synthesizer (CS-Bio). Five-fold excess of Fmoc-amino acids were used for the coupling in presence of HCTU (6 eq.)/DIEA (12 eq.). The coupling times for the first 10 and the latter couplings were 2 hours and 3 hours, respectively. The Fmoc was removed with 20% 4-methylpiperidine twice (5 minutes, 15 minutes). The following Fmoc-amino acids were coupled sequentially: Fmoc-D-Lys(Boc)-OH, Fmoc-AEEA linker, Fmoc-AEEA linker, Fmoc-Tyr(tBu)-OH, Fmoc- Leu-OH, Fmoc-Ile-OH, Fmoc-Ser(tBu)-OH, Fmoc-Lys(Dde)-OH, Fmoc-Tyr(tBu)-OH, Fmoc-Leu-OH, Fmoc-Glu(tBu)-OH, Fmoc-Gly-OH, Fmoc-Ala-OH, Fmoc-Lys(Dde)-OH, Fmoc-Leu-OH, Fmoc-Ala-OH, Fmoc-Ala-OH, Fmoc-Asn(Trt)-OH, Fmoc-Ala-OH, Fmoc- Arg(pbf)-OH, Fmoc-Arg(Pbf)-OH. The beads were transferred to a 20-ml column from the synthesizer. The TV-terminal Fmoc and Dde groups were removed with 3% NH2NH2 in DMF (10 minutes, 15 minutes). After washing with DMF, MeOH, and DCM respectively, the free amino groups were re-protected with Fmoc using Fmoc-OSu (10 eq.) in presence of DIEA (20 eq.) in DCM. This step was repeated until a Kaiser test was negative. The resulting Fmoc-protected SILY-k(Boc) beads were thoroughly washed with DMF, MeOH and DCM and then dried under vacuum for 1 hour before adding a cleavage cocktail of 82.5% TFA: 5% phenol: 5% thioanisole: 5% water: 2.5% TIS. The beads were rotated at room temperature for 4 hours. The liquid was collected and concentrated by blowing with nitrogen gas. The crude product was precipitated with cold ether and purified by reverse-phase HPLC and lyophilized to give Fmoc-SILY-k in powder form. The identity of the compound was confirmed by MALDI-TOF MS, calculated for Ci55H2i8N32037 (m/z): 3119.61; Found: 3120.82 (MH+). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
76.5% | With diphenylphosphoranyl azide; N-ethyl-N,N-diisopropylamine; In N,N-dimethyl-formamide; at 50℃; for 18h; | (1) Add 100 g (0.27) of N-fluorenylmethoxycarbonyl-L-glutamic acid to the reaction flask, and then add 500 ml of DMF.Further, 52.5 g (0.41 mol) of DIEA and 111.5 g (0.41 mol) of DPPA were added and stirred, and heated to 50 C for 18 h.The progress of the reaction was monitored by TLC. After the reaction was completed, 6N hydrochloric acid was added to adjust the pH of the system to 3.And the reaction was completed, and then the mixture was treated with ethyl acetate to give fmoc-dab-OH 70.5 g (0.21 mol).Yield 76.5%, placed for use; |
[ 110990-08-4 ]
(((9H-Fluoren-9-yl)methoxy)carbonyl)-D-lysine
Similarity: 1.00
[ 144701-20-2 ]
2-((((9H-Fluoren-9-yl)methoxy)carbonyl)amino)hexanoic acid
Similarity: 1.00
[ 201046-59-5 ]
(S)-2,5-Bis((((9H-fluoren-9-yl)methoxy)carbonyl)amino)pentanoic acid
Similarity: 1.00
Precautionary Statements-General | |
Code | Phrase |
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P378 | |
P380 | Evacuate area. |
P381 | Eliminate all ignition sources if safe to do so. |
P390 | Absorb spillage to prevent material damage. |
P391 | Collect spillage. Hazardous to the aquatic environment |
P301 + P310 | IF SWALLOWED: Immediately call a POISON CENTER or doctor/physician. |
P301 + P312 | IF SWALLOWED: call a POISON CENTER or doctor/physician IF you feel unwell. |
P301 + P330 + P331 | IF SWALLOWED: Rinse mouth. Do NOT induce vomiting. |
P302 + P334 | IF ON SKIN: Immerse in cool water/wrap in wet bandages. |
P302 + P350 | IF ON SKIN: Gently wash with plenty of soap and water. |
P303 + P361 + P353 | IF ON SKIN (or hair): Remove/Take off Immediately all contaminated clothing. Rinse SKIN with water/shower. |
P304 + P312 | IF INHALED: Call a POISON CENTER or doctor/physician if you feel unwell. |
P304 + P340 | IF INHALED: Remove victim to fresh air and Keep at rest in a position comfortable for breathing. |
P304 + P341 | IF INHALED: If breathing is difficult, remove victim to fresh air and keep at rest in a position comfortable for breathing. |
P305 + P351 + P338 | IF IN EYES: Rinse cautiously with water for several minutes. Remove contact lenses, if present and easy to do. Continue rinsing. |
P306 + P360 | IF ON CLOTHING: Rinse Immediately contaminated CLOTHING and SKIN with plenty of water before removing clothes. |
P307 + P311 | IF exposed: call a POISON CENTER or doctor/physician. |
P308 + P313 | IF exposed or concerned: Get medical advice/attention. |
P309 + P311 | IF exposed or if you feel unwell: call a POISON CENTER or doctor/physician. |
P332 + P313 | IF SKIN irritation occurs: Get medical advice/attention. |
P333 + P313 | IF SKIN irritation or rash occurs: Get medical advice/attention. |
P335 + P334 | Brush off loose particles from skin. Immerse in cool water/wrap in wet bandages. |
P337 + P313 | IF eye irritation persists: Get medical advice/attention. |
P342 + P311 | IF experiencing respiratory symptoms: call a POISON CENTER or doctor/physician. |
P370 + P376 | In case of fire: Stop leak if safe to Do so. |
P370 + P378 | In case of fire: |
P370 + P380 | In case of fire: Evacuate area. |
P370 + P380 + P375 | In case of fire: Evacuate area. Fight fire remotely due to the risk of explosion. |
P371 + P380 + P375 | In case of major fire and large quantities: Evacuate area. Fight fire remotely due to the risk of explosion. |
Storage | |
Code | Phrase |
P401 | |
P402 | Store in a dry place. |
P403 | Store in a well-ventilated place. |
P404 | Store in a closed container. |
P405 | Store locked up. |
P406 | Store in corrosive resistant/ container with a resistant inner liner. |
P407 | Maintain air gap between stacks/pallets. |
P410 | Protect from sunlight. |
P411 | |
P412 | Do not expose to temperatures exceeding 50 oC/ 122 oF. |
P413 | |
P420 | Store away from other materials. |
P422 | |
P402 + P404 | Store in a dry place. Store in a closed container. |
P403 + P233 | Store in a well-ventilated place. Keep container tightly closed. |
P403 + P235 | Store in a well-ventilated place. Keep cool. |
P410 + P403 | Protect from sunlight. Store in a well-ventilated place. |
P410 + P412 | Protect from sunlight. Do not expose to temperatures exceeding 50 oC/122oF. |
P411 + P235 | Keep cool. |
Disposal | |
Code | Phrase |
P501 | Dispose of contents/container to ... |
P502 | Refer to manufacturer/supplier for information on recovery/recycling |
Physical hazards | |
Code | Phrase |
H200 | Unstable explosive |
H201 | Explosive; mass explosion hazard |
H202 | Explosive; severe projection hazard |
H203 | Explosive; fire, blast or projection hazard |
H204 | Fire or projection hazard |
H205 | May mass explode in fire |
H220 | Extremely flammable gas |
H221 | Flammable gas |
H222 | Extremely flammable aerosol |
H223 | Flammable aerosol |
H224 | Extremely flammable liquid and vapour |
H225 | Highly flammable liquid and vapour |
H226 | Flammable liquid and vapour |
H227 | Combustible liquid |
H228 | Flammable solid |
H229 | Pressurized container: may burst if heated |
H230 | May react explosively even in the absence of air |
H231 | May react explosively even in the absence of air at elevated pressure and/or temperature |
H240 | Heating may cause an explosion |
H241 | Heating may cause a fire or explosion |
H242 | Heating may cause a fire |
H250 | Catches fire spontaneously if exposed to air |
H251 | Self-heating; may catch fire |
H252 | Self-heating in large quantities; may catch fire |
H260 | In contact with water releases flammable gases which may ignite spontaneously |
H261 | In contact with water releases flammable gas |
H270 | May cause or intensify fire; oxidizer |
H271 | May cause fire or explosion; strong oxidizer |
H272 | May intensify fire; oxidizer |
H280 | Contains gas under pressure; may explode if heated |
H281 | Contains refrigerated gas; may cause cryogenic burns or injury |
H290 | May be corrosive to metals |
Health hazards | |
Code | Phrase |
H300 | Fatal if swallowed |
H301 | Toxic if swallowed |
H302 | Harmful if swallowed |
H303 | May be harmful if swallowed |
H304 | May be fatal if swallowed and enters airways |
H305 | May be harmful if swallowed and enters airways |
H310 | Fatal in contact with skin |
H311 | Toxic in contact with skin |
H312 | Harmful in contact with skin |
H313 | May be harmful in contact with skin |
H314 | Causes severe skin burns and eye damage |
H315 | Causes skin irritation |
H316 | Causes mild skin irritation |
H317 | May cause an allergic skin reaction |
H318 | Causes serious eye damage |
H319 | Causes serious eye irritation |
H320 | Causes eye irritation |
H330 | Fatal if inhaled |
H331 | Toxic if inhaled |
H332 | Harmful if inhaled |
H333 | May be harmful if inhaled |
H334 | May cause allergy or asthma symptoms or breathing difficulties if inhaled |
H335 | May cause respiratory irritation |
H336 | May cause drowsiness or dizziness |
H340 | May cause genetic defects |
H341 | Suspected of causing genetic defects |
H350 | May cause cancer |
H351 | Suspected of causing cancer |
H360 | May damage fertility or the unborn child |
H361 | Suspected of damaging fertility or the unborn child |
H361d | Suspected of damaging the unborn child |
H362 | May cause harm to breast-fed children |
H370 | Causes damage to organs |
H371 | May cause damage to organs |
H372 | Causes damage to organs through prolonged or repeated exposure |
H373 | May cause damage to organs through prolonged or repeated exposure |
Environmental hazards | |
Code | Phrase |
H400 | Very toxic to aquatic life |
H401 | Toxic to aquatic life |
H402 | Harmful to aquatic life |
H410 | Very toxic to aquatic life with long-lasting effects |
H411 | Toxic to aquatic life with long-lasting effects |
H412 | Harmful to aquatic life with long-lasting effects |
H413 | May cause long-lasting harmful effects to aquatic life |
H420 | Harms public health and the environment by destroying ozone in the upper atmosphere |
Sorry,this product has been discontinued.
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