Structure of 2,6-Dibromo-4-methoxypyridine
CAS No.: 117873-72-0
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CAS No. : | 117873-72-0 |
Formula : | C6H5Br2NO |
M.W : | 266.92 |
SMILES Code : | COC1=CC(Br)=NC(Br)=C1 |
MDL No. : | MFCD11036227 |
InChI Key : | FBLLPCQLOGKHAL-UHFFFAOYSA-N |
Pubchem ID : | 10901569 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H332-H335 |
Precautionary Statements: | P261-P280-P305+P351+P338 |
Num. heavy atoms | 10 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.17 |
Num. rotatable bonds | 1 |
Num. H-bond acceptors | 2.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 46.13 |
TPSA ? Topological Polar Surface Area: Calculated from |
22.12 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
2.38 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
2.87 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
2.62 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
1.67 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.71 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
2.45 |
Log S (ESOL):? ESOL: Topological method implemented from |
-3.68 |
Solubility | 0.0556 mg/ml ; 0.000208 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.99 |
Solubility | 0.271 mg/ml ; 0.00101 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-3.86 |
Solubility | 0.037 mg/ml ; 0.000139 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-5.89 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<0.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.87 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70% | With methanol; In tetrahydrofuran; at 20℃; for 2h; | To a solution of compound S1 (2 g, 7.11 mmol) in THF (15 mL) was added MeONa/MeOH solution (1.2 mL, 6.05 mmol, 1.3 M). The reaction was stirred at room temperature for 2 hrs and quenched with water. The resulting mixture was extracted with EtOAc twice. The combined organic phases were washed with brine, dried over anhydrous Na2SO4, filtered and concentrated to dryness. The residue was purified by silica gel column eluted with (PE/Acetone=30/1) to give the title compound (1.45 g, 70% yield) as a white solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
86% | 2,6-Dibromo-4-methoxy pyridine (6) was obtained in 80% yield when 2,4,6-tribromopyridine (5) was allowed to react with sodium methoxide (1.2 eq) in refluxing methanol. The compound (6) was treated using n-butyl lithium (1.2 eq.), was allowed to react with pivalonitrile (1.2 eq.) for 150 minutes at -78C and was refluxed for two hours in two normal sulfuric acid to yield ketone isomer (7) in 86% yield. An optically active alcohol (8) was obtained in 93% yield and in 90% ee optical purity from compound (7) through hydrogen transfer type asymmetric reduction of formic acid (4.3 eq.) and triethylamine (2.5 eq.) using the asymmetric ruthenium catalyst (RuCl[(S,S]-Tsdpen)(p-cumene), 0.01 eq.) as the catalyst. The compound (8) was converted to a camphor ester using the acid chloride, an optical resolution process was conducted using re-crystallization (75% yield, diastereomer ratio = >99/<1) and saponified again to obtain an almost optically pure alcohol (7, quant.). The compound (7) was subjected to homo coupling using a palladium catalyst [PdCl2(PhCN)2-TDAE] to yield a pyridine isomer (9) (Chemical formula 5) in 36% yield (diastereomer ratio =>99.5/<0.5). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In hexane; N,N-dimethyl-formamide; mineral oil; | (1) Production of 2-bromo-4-methoxy-6-{3-(trifluoromethyl)phenoxy} pyridine as an intermediate product 3.34 g (0.187*1.1 mol) of 3-(trifluoromethyl) phenol was dissolved in about 30 ml of dimethyl formamide. The solution was further mixed with 0.78 g (ca. 60% in mineral oil; 0.0187*1.04 mol) of sodium hydride and then with 5.00 g (0.0187 mol) of <strong>[117873-72-0]2,6-dibromo-4-methoxy pyridine</strong>. After stirring at about 120 C. for about 2 hours, the mixture was allowed to stand for cooling to room temperature. After the reaction solution was distributed with hexane-saturated sodium bicarbonate water, the organic phase of the obtained solution was washed with saturated brine and dried with anhydrous sodium sulfate. The resultant solution was concentrated and then purified by silica gel column chromatography (eluding solution: ethyl acetate/hexane), and the obtained product was subjected to recrystallization using hexane, thereby obtaining an aimed product. Yield by weight: 3.23 g; yield by percentage: 50%; solid; melting point: 57 to 60 C.; 1 H-NMR (60 MHz, CDCl3, delta): 3.75 (3H, s), 6.26 (1H, d, J=2 Hz), 6.75 (1H, d, J=2 Hz), 7.0-7.6 (4H, complex). | |
In hexane-saturated sodium bicarbonate water; hexane; N,N-dimethyl-formamide; mineral oil; | (1) <Production of 2-bromo-4-methoxy-6-[3-(trifluoromethyl)phenoxy] pyridine as an intermediate product> 3-(trifluoromethyl) phenol (3.34 g; 0.0187*1.1 mol) was dissolved in dimethyl formamide (about 30 ml). Further, sodium hydride [0.78 g (ca. 60% in mineral oil), 0.0187*1.0 mol] and then <strong>[117873-72-0]2,6-dibromo-4-methoxy pyridine</strong> (5.00 g, 0.0187 mol) were added to the solution. The obtained solution was stirred at about 120 C. for about 2 hours and, thereafter, allowed so as to stand and cooled to room temperature. The obtained reaction solution was distributed in hexane-saturated sodium bicarbonate water. The organic phase separated from the reaction solution was washed with saturated brine, and dried with anhydrous sodium sulfate. The resultant solution was concentrated and then purified by silica gel column chromatography (eluding solution: ethyl acetate/hexane), and the obtained purified product was subjected to recrystallization using hexane, thereby obtaining an aimed product. Yield weight: 3.23 g; yield percentage: 50%; solid; melting point: 57 to 60 C.; 1 H-NMR (60 MHz, CDCl3, delta): 3.75(3H, s), 6.26(1H, d, J=2 Hz), 6.75(1H, d, J=2 Hz), 7.0-7.6(4H, complex). | |
In hexane-saturated sodium bicarbonate water; hexane; N,N-dimethyl-formamide; mineral oil; | (1) Production of 2-bromo-4-methoxy-6-[3-(trifluoromethyl)phenoxy] pyridine as an intermediate 3-(trifluoromethyl) phenol (3.34 g; 0.0187*1.1 mol) was dissolved in dimethyl formamide (hereinafter referred to merely as "DMF") (approximately 30 ml). Further, sodium hydride [0.78 g (ca. 60% in mineral oil), 0.0187*1.0 mol] and then <strong>[117873-72-0]2,6-dibromo-4-methoxy pyridine</strong> (5.00 g, 0.0187 mol) were added to the solution. The obtained solution was stirred at about 120 C. for about 2 hours and, thereafter, allowed to stand so as to be cooled to room temperature. The obtained reaction solution was distributed in hexane-saturated sodium bicarbonate water. The organic phase separated from the reaction solution was washed with saturated brine, and dried with anhydrous sodium sulfate. The resultant solution was concentrated and then purified by silica gel column chromatography (eluding solution: ethyl acetate/hexane), and the obtained purified product was subjected to recrystallization using hexane, thereby obtaining an aimed product. Yield weight: 3.23 g; yield by percentage: 50%; solid; melting point: 57 to 60 C.; 1H-NMR (60 MHz, CDCl3, delta): 3.75(3H, s), 6.26(1H, d, J=2 Hz), 6.75(1H, d, J=2 Hz), 7.0-7.6(4H, complex). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In hexane; N,N-dimethyl-formamide; mineral oil; | (1) Production of 2-bromo-4-methoxy-6-{3-(trifluoromethoxy)phenoxy} pyridine as an intermediate product 2.00 g (0.00937*1.2 mol) of 3-(trifluoromethoxy) phenol was dissolved in about 20 ml of dimethyl formamide. The solution was further mixed with 0.39 g (ca. 60percent in mineral oil; 0.00937*1.04 mol) of sodium hydride and then with 2.50 g (0.00937 mol) of <strong>[117873-72-0]2,6-dibromo-4-methoxy pyridine</strong>. After stirring at about 110° C. for about 4 hours, the mixture was allowed to stand for cooling to room temperature. After the reaction solution was distributed with hexane-saturated sodium bicarbonate water, the organic phase of the obtained solution was washed with saturated brine and dried with anhydrous sodium sulfate. The resultant solution was concentrated and then purified by silica gel column chromatography (eluding solution: ethyl acetate/hexane), and the obtained product was subjected to recrystallization using hexane, thereby obtaining an aimed product. Yield by weight: 1.40 g; yield by percentage: 41percent; oily substance; 1 H-NMR (60 MHz, CDCl3, delta): 3.73 (3H, s), 6.25 (1H, d, J=2 Hz), 6.69 (1H, d, J=2 Hz), 6.7-7.5 (4H, complex). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Methanol (1.48 g, 46.1 mmol) is slowly added to a cooled suspension (00C) of NaH (2.12 g, 53.2 mmol, 60% dispersion in mineral oil, washed with hexane prior to <n="85"/>use) in THF (20 ml_). Upon completion of the addition the mixture is stirred at 00C for 150 min before 2,6-dibromo-4-nitropyridine (10.0 g, 35.4 mmol) is added. The temperature rises to 14C. The mixture is stirred at rt for 3 h before the reaction is quenched with sat. aq. NH4CI solution. The mixture is diluted with water and extracted twice with EA (250 ml_). The combined org. extracts are dried over MgSO4, filtered and concentrated. The crude product is purified by CC on silica gel eluting with DCM to give 2,6-dibromo-4-methoxy-pyridine (6.43 g) as an off-white solid; LC-MS: tR = 0.90 min, [M+1]+ = 267.75. | ||
a) Methanol (1.48 g, 46.1 mmol) is slowly added to a cooled suspension (0 C.) of NaH (2.12 g, 53.2 mmol, 60% dispersion in mineral oil, washed with hexane prior to use) in THF (20 mL). Upon completion of the addition the mixture is stirred at 0 C. for 150 min before 2,6-dibromo-4-nitropyridine (10.0 g, 35.4 mmol) is added. The temperature rises to 14 C. The mixture is stirred at rt for 3 h before the reaction is quenched with sat. aq. NH4Cl solution. The mixture is diluted with water and extracted twice with EA (250 mL). The combined org. extracts are dried over MgSO4, filtered and concentrated. The crude product is purified by CC on silica gel eluting with DCM to give 2,6-dibromo-4-methoxy-pyridine (6.43 g) as an off-white solid; LC-MS: tR=0.90 min, [M+1]+=267.75. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With hydrogenchloride; n-butyllithium; In diethyl ether; hexane; | Production Example 5 Production of N-benzyl-6-bromo-4-methoxy-2-pyridine carboxamide (compound No. I-9) 1.0 g (0.0037 mol) of <strong>[117873-72-0]2,6-dibromo-4-methoxy pyridine</strong> was suspended in about 15 ml of diethyl ether. While cooling the suspension in a dry ice-acetone bath in an argon atmosphere, 2.6 ml of about 1.6M hexane solution of BuLi (0.0037*1.1 mol) was added to the suspension, followed by stirring for about 10 minutes. After 0.75 g (0.0037*1.5 mol) of benzyl isocyanate dissolved in about 5 ml of diethyl ether was added to the reaction solution, the bath was removed and stirred at room temperature for about 40 minutes. The reaction solution was mixed with about 5 ml of 1N hydrochloric acid aqueous solution, and then distributed with ethyl acetate-saturated sodium bicarbonate water, followed by washing with saturated brine. The organic phase of the obtained solution was dried with anhydrous sodium sulfate, concentrated and purified by silica gel column chromatography (eluding solution: ethyl acetate/hexane), thereby obtaining an aimed product. Yield by weight: 1.04 g; yield by percentage: 86%; solid; melting point: 107 to 111 C.; 1 H-NMR (60 MHz, CDCl3, delta): 3.75 (3H, s), 4.52 (2H, d, J=6 Hz), 6.94 (1H, d, J=2 Hz), 7.20 (5H, s), 7.59 (1H, d, J=2 Hz), 7.8-8.4 (1H, br). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In tetrahydrofuran; methanol; mineral oil; | (1) Production of 2,6-dibromo-4-methoxy pyridine as an intermediate product 1.49 g (ca. 60% in mineral oil; 0.0355*1.05 mol) of sodium hydride was washed with hexane and suspended in tetrahydrofuran. The suspension was mixed with 1.70 g (0.0355*1.5 mol) of methanol and then with 10.00 g (0.0355 mol) of 2,6-dibromo-4-nitropyridine, and stirred at room temperature for about one hour. Further, the suspension was mixed with 0.2 g (ca. 60% in mineral oil; 0.0355*0.14 mol) of sodium hydride, and stirred for about one hour. Next, 1.0 g (0.0355*0.9 mol) of methanol was added to the suspension, and after it was determined that no foaming was caused therein, the reaction solution was distributed with ethyl acetate-saturated sodium bicarbonate water. The organic phase of the obtained reaction solution was washed with saturated brine, dried with anhydrous sodium sulfate and then concentrated, thereby obtaining an aimed product. Yield by weight: 9.27 g; yield by percentage: 98%; solid; melting point: 131 to 133 C.; 1 H-NMR (60 MHz, CDCl3, delta): 3.79 (3H, s), 6.89 (2H, s). | |
In tetrahydrofuran; methanol; mineral oil; | (1) Synthesis of an Intermediate, 2,6-dibromo-4-methoxypyridine Sodium hydride (1.49 g (ca.60% in mineral oil), 0.0355*1.05 mol) was washed with hexane and suspended in tetrahydrofuran, and methanol (1.70 g, 0.0355*1.5 mol) was added thereto. Then, 2,6-dibromo-4-nitropyridine (10.00 g, 0.0355 mol) was added thereto and the resultant solution was stirred for about 1 hour at room temperature. Additional sodium hydride (0.2 g (Ca.60% in mineral oil), 0.0355*0.14 mol) was added, then the resultant solution was stirred for about 1 hour. After it was confirmed that there was no bubbling with the addition of methanol (1.0 g, 0.0355*0.9 mol), the reaction solution was partitioned between ethyl acetate and aqueous saturated sodium hydrogen carbonate. The obtained organic layer was washed with aqueous saturated sodium chloride, dried over anhydrous sodium sutfate and thereafter concentrated to obtain the end product. Yield: 9.27 g (98%). Solid. Melting point: 131 to 133 C. 1 H-NMR (60 MHz, CDCl3, delta): 3.79(3H, s), 6.89(2H, s). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With hydrogenchloride; n-butyllithium; In diethyl ether; hexane; | Production Example 6 Production of N-(i-propyl)-6-bromo-4-methoxy-2-pyridine carboxamide (compound No. I-10) 1.0 g (0.0037 mol) of <strong>[117873-72-0]2,6-dibromo-4-methoxy pyridine</strong> was suspended in about 15 ml of diethyl ether. While cooling the suspension in a dry ice-acetone bath in an argon atmosphere, 2.6 ml of about 1.6M hexane solution of BuLi (0.0037*1.1 mol) was added to the suspension, followed by stirring for about 10 minutes. After 0.64 g (0.0037*2.0 mol) of i-propyl isocyanate dissolved in about 5 ml of diethyl ether was added to the reaction solution, the bath was removed and stirred at room temperature for about 40 minutes. The reaction solution was mixed with about 5 ml of 1N hydrochloric acid aqueous solution, and then distributed with ethyl acetate-saturated sodium bicarbonate water, followed by washing with saturated brine. The organic phase of the obtained solution was dried with anhydrous sodium sulfate, concentrated and purified by silica gel column chromatography (eluding solution: ethyl acetate/hexane), thereby obtaining an aimed product. Yield by weight: 0.76 g; yield by percentage: 74%; solid; melting point: 70 to 76 C.; 1 H-NMR (60 MHz, CDCl3, delta): 1.25 (6H, d, J=6.4 Hz), 3.82 (3H, s), 3.8-4.6 (1H, mult.), 6.98 (1H, d, J=2 Hz), 7.0-7.9 (1H, br), 7.61 (1H, d, J=2 Hz). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With hydrogenchloride; n-butyllithium; In diethyl ether; hexane; | (2) Production of N-(4-methylphenyl)-6-bromo-4-methoxy-2-pyridine carboxamide (compound No. I-7) 2.0 g (0.0075 mol) of <strong>[117873-72-0]2,6-dibromo-4-methoxy pyridine</strong> was added to about 30 ml of diethyl ether. While cooling the obtained solution in a dry ice-acetone bath in an argon atmosphere, the solution was mixed with 6.0 ml of about 1.6M hexane solution of BuLi (0.0075*1.3 mol), followed by stirring for about 10 minutes. After 2.0 g (0.0075*2.0 mol) of 4-methylphenyl isocyanate dissolved in about 5 ml of diethyl ether was added to the reaction solution, the bath was removed and stirred at room temperature for about 40 minutes. The reaction solution was mixed with about 10 ml of 1.2N hydrochloric acid aqueous solution, and then distributed with ethyl acetate-saturated sodium bicarbonate water, followed by washing with saturated brine. The organic phase of the obtained solution was dried with anhydrous sodium sulfate, concentrated and subjected to silica gel column chromatography (eluding solution: ethyl acetate/hexane) to separate a main fraction therefrom. The fraction was concentrated and then subjected to precipitation using hexane, thereby obtaining an aimed product. Yield by weight: 1.38 g; yield by percentage: 57%; solid; melting point: 153 to 157 C.; 1 H-NMR (60 MHz, CDCl3, delta): 2.28 (3H, s), 3.82 (3H, s), 7.02 (1H, d, J=2 Hz), 7.09 (2H, d, J=8 Hz), 7.56 (2H, d, J=8 Hz), 7.68 (1H, d, J=2 Hz), 9.53 (1H, s). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In N-methyl-acetamide; mineral oil; | (1) Synthesis of an Intermediate, 2-bromo-4-methoxy-6-phenoxypyridine To a dimethylformamide solution containing phenol (0.58 g, 0.0056*1.1 mol), sodium hydride (0.24 g (ca.60% in mineral oil)., 0.0056*1.07 mol) was added. Then, <strong>[117873-72-0]2,6-dibromo-4-methoxypyridine</strong> (1.5 g, 0.0056 mol) was added thereto and the resultant solution was stirred for about 2 hours at about 110 C. Thereafter, the reaction solution was partitioned between hexane and aqueous saturated sodium hydrogen carbonate. The obtained organic layer was washed with aqueous saturated sodium chloride, dried over anhydrous sodium sulfate and thereafter concentrated. The concentrate was purified on a silica gel column, then crystallized from hexane to obtain the end product. Yield: 0.83 g (53%). Oily product. 1 H-NMR (60 MHz, CDCl3, delta): 3.67(3H, s), 6.12(1H, d, J=2.0 Hz), 6.66(1H, d, J=2.0 Hz), 6.8-7.5(5H, complex). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
80% | In methanol; for 2.5h;Heating / reflux; | 2,6-Dibromo-4-methoxy pyridine (6) was obtained in 80% yield when 2,4,6-tribromopyridine (5) was allowed to react with sodium methoxide (1.2 eq) in refluxing methanol. The compound (6) was treated using n-butyl lithium (1.2 eq.), was allowed to react with pivalonitrile (1.2 eq.) for 150 minutes at -78C and was refluxed for two hours in two normal sulfuric acid to yield ketone isomer (7) in 86% yield. An optically active alcohol (8) was obtained in 93% yield and in 90% ee optical purity from compound (7) through hydrogen transfer type asymmetric reduction of formic acid (4.3 eq.) and triethylamine (2.5 eq.) using the asymmetric ruthenium catalyst (RuCl[(S,S]-Tsdpen)(p-cumene), 0.01 eq.) as the catalyst. The compound (8) was converted to a camphor ester using the acid chloride, an optical resolution process was conducted using re-crystallization (75% yield, diastereomer ratio = >99/<1) and saponified again to obtain an almost optically pure alcohol (7, quant.). The compound (7) was subjected to homo coupling using a palladium catalyst [PdCl2(PhCN)2-TDAE] to yield a pyridine isomer (9) (Chemical formula 5) in 36% yield (diastereomer ratio =>99.5/<0.5). |
A147692 [1206984-48-6]
2-Bromo-4-(difluoromethoxy)pyridine
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