Structure of 1211526-53-2
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 1211526-53-2 |
Formula : | C12H19NO4 |
M.W : | 241.28 |
SMILES Code : | O=C(C(C1)CC21CN(C(OC(C)(C)C)=O)C2)O |
MDL No. : | MFCD17016194 |
InChI Key : | SZAAHQWPPBNUQR-UHFFFAOYSA-N |
Pubchem ID : | 46930466 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 17 |
Num. arom. heavy atoms | 0 |
Fraction Csp3 | 0.83 |
Num. rotatable bonds | 4 |
Num. H-bond acceptors | 4.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 65.6 |
TPSA ? Topological Polar Surface Area: Calculated from |
66.84 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
2.41 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.02 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.34 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
1.31 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
0.76 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.37 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.71 |
Solubility | 4.66 mg/ml ; 0.0193 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.01 |
Solubility | 2.34 mg/ml ; 0.0097 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-0.92 |
Solubility | 29.3 mg/ml ; 0.122 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
Yes |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-7.05 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.56 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.65 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
84% | With N-ethyl-N,N-diisopropylamine; HATU; In N,N-dimethyl-formamide; at 0℃; for 1h; | Example 40: Synthesis of(2S,5R)-2-(5-(2-azaspiro[3.3]heptan-6-yl)-l,3,4-oxadiazol-2-yl)-7- ESI-MS (EI+, m/z): 386.3. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With benzotriazol-1-ol; 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride; N-ethyl-N,N-diisopropylamine; In N,N-dimethyl-formamide; for 24h; | [00262] 6C. (S)-tert-Butyl 6-(l-((4-(tert-butoxycarbonyl)phenyl)carbamoyl)-l,2,3,4- tetrahydroisoquinoline-2-carbonyl)-2-azaspiro[3.3]heptane-2-carboxylate: 6B (27 mg, 0.058 mmol), <strong>[1211526-53-2]2-(tert-butoxycarbonyl)-2-azaspiro[3.3]heptane-6-carboxylic acid</strong> (13.97 mg, 0.058 mmol), EDC (11.10 mg, 0.058 mmol), and HOBT (8.86 mg, 0.058 mmol) were combined in DMF (0.8 mL) and Hunig's base (0.061 mL, 0.347 mmol) was added. After 24 h, the reaction was partitioned with water (10 mL) and ethyl acetate (10 mL). The aqueous layer was extracted with ethyl acetate(lx5 mL). The combined organic layers were washed with brine (10 mL) and dried (MgSC^) and the crude material was carried onto the next step. MS (ESI) m/z: 576.2 (M+H)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With pyridine; N1-((ethylimino)methylene)-N3,N3-dimethylpropane-1,3-diamine hydrochloride; at 20 - 25℃; for 12h; | 44.1 (S)-tert-l3utyl 6-((5-cyano-3-(2-ethoxypyridin-3-ye-i -((4-methoxyphenyl)sulfonyl)-2-oxoindolin-3-yl)carbamoyl)-2-azaspiro[3 .3]heptane-2-carboxy- late10832] Ni -((Ethylimino)methylene)-N3,N3-dimethylpro- pane-i ,3-diamine hydrochloride (5.4 mmol, 1.0 g) was added portionwise to a solution of(S)-3-amino-3-(2-ethoxypyridin- 3-ye-i -((4-methoxyphenyl)sulfonyl)-2-oxoindoline-5-car- bonitrile (1.1 mmol, 500 mg) and 2-(tert-butoxycarbonyl)-2- azaspiro[3.3]heptane-6-carboxylic acid (1.1 mmol, 260 mg) in pyridine (10 ml). The mixture was stirred for 12 hat rt. The reaction was monitoredby TLC (eluent: 5% MeOH/CH2C12). The mixture was poured onto cooled water and the precipitate filtered off. It was washed with cold water and dried in vacuo. The crude product was directly used in the next step without purification.10833] ESI-MS: [M+H]=688.20 (90% purity) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
86% | Intermediate 10 tert-buty 6-carbamoyl-2-azaspiro[3.3]heptane-2-carboxylate To a stirred solution of 2-[(ieri-butoxy)carbonyl]-2-azaspiro[3.3]heptane-6-carboxylic acid (700 mg, 2.90 mmol) in DCM (100 mL), under nitrogen, was added triethylamine (386 mu, 2.90 mmol). The reaction was cooled to 0C and chloro(ethoxy)methanone (304 3.19 mmol) was added dropwise. The reaction was allowed to warm to room temperature and stirred for 2 h. The reaction was then cooled to 0C and aqueous ammonia (290 muL, 2.90 mmol) was added. The reaction was allowed to warm to room temperature and stirred for 3 h. The reaction was diluted with DCM (100 mL) and washed with water (3 x 50 mL) and 10% NaHC03 (aq) (50 mL). The organic phase was dried (MgSC^), filtered and concentrated to afford the title compound as a white solid (601 mg, 86%); m z = 184.9 (MH-lBu)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
62% | With water; potassium hydroxide; In ethanol; at 20℃; | Compound 3 (2.0 g, 9.0 mmol) was dissolved in ethanol (40 mL) and water (40 mL)Potassium hydroxide (2.0 g, 36.0 mmol) was then added and stirred overnight at room temperature.TLC (petroleum ether / ethyl acetate volume ratio = 1/1, Rf = 0.0) indicated that the reaction was complete, then most of the ethanol was concentrated in vacuo, then the pH was adjusted to 3-4 with 1N hydrochloric acid and the aqueous phase extracted with dichloromethane The combined organics were dried over anhydrous sodium sulfate and concentrated in vacuo to dryness to give compound 4 (1.3 g) in 62% yield. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
83% | To a mixture of 2-(Yer/-butoxycarbonyl)-2- azaspiro[3.3]heptane-6-carboxylic acid (100 mg, 0.414 mmol) and Intermediate 11 (93 mg, 0.414 mmol) in DMF (1 niL) under Ar was added BOP (275 mg, 0.622 mmol) followed by DIPEA (0.217 mL, 1.243 mmol) . The reaction was stirred at room temperature for 1.5 h. The mixture was purified by preparative HPLC (Phenomenex Luna Axia 5mu C18 30 x 100 mm; 10 min gradient from 30% A: 70% B to 0% A: 100% B (A = 90% H2O/IO % MeOH + 0.1% TFA); (B = 90% MeOH/10% H2O + 0.1% TFA);detection at 220 nm) to yield E2A (194 mg, 83%). LCMS (ES): m/z 448.4 [M+H]+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
50% | With 2,4,6-tripropyl-1,3,5,2,4,6-trioxatriphosphinane-2,4,6-trioxide; triethylamine; In ethyl acetate; N,N-dimethyl-formamide; at 20℃; for 1.5h;Inert atmosphere; | To a mixture of 2-(Yer/-butoxycarbonyl)-2- azaspiro[3.3]heptane-6-carboxylic acid (50 mg, 0.207 mmol) and Intermediate 8 (51.4 mg, 0.207 mmol) in DMF (1 mL) under Ar was added TEA (0.087 mL, 0.622 mmol) followed by T3P, 50 wt% in EtOAc (0.183 mL, 0.311 mmol) . The reaction was stirred at room temperature for 1.5 h. The mixture was purified by preparative HPLC (Phenomenex Luna Axia 5mu C18 30 x 100 mm; 10 min gradient from 25% A: 75% B to 0% A: 100% B (A = 90% H2O/10% MeOH + 0.1 % TFA); (B = 90% MeOH/10% H2O + 0.1% TFA); detection at 220 nm) to yield E1A (49 mg, 50%). LCMS (ES): m/z 471.2 [M+H]+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With triethylamine; N-[(dimethylamino)-3-oxo-1H-1,2,3-triazolo[4,5-b]pyridin-1-yl-methylene]-N-methylmethanaminium hexafluorophosphate; In tetrahydrofuran; at 20 - 80℃; | Triethylamine (1.67 mE, 12.0 mmol) and HATU (1.67 g, 4.4 mmol) were added to a solution of 2-(tert- butoxycarbonyl)-2-azaspiro[3 .3]heptane-6-carboxylic acid (0.965 g, 4.0 mmol) and 2,2,2-trifluoro-N-hydroxyethanimi- damide (0.512 g, 4.0 mmol) in THF (20 mE) and the resulting mixture was stirred at RT for 4 h then heated at reflux at 80 C. overnight. The reaction mixture was concentrated to remove the THF and the residue was partitioned between sat. aq. NaHCO3 (containing some Na2CO3) and DCM. The phases were separated and the aqueous phase was extracted further with DCM (x2). The combined organic phases were passed through a phase separator cartridge and concentrated. The crude residue was purified by flash chromatography (normal silica, mesh size: 60-120, 0% to 10% MeOH in DCM) to give impure tert-butyl 6-[3- (trifluoromethyl)-1 ,2,4-oxadiazol-5-yl]-2-azaspiro[3 .3]hep- tane-2-carboxylate (2.05 g, >100%). ECMS (Method C): mlz 278 [M-93u+H] (ESj, at1.59 mi UV active. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
68.9% | With triethylamine; In N,N-dimethyl-formamide; at 0℃; for 2h; | <strong>[1211526-53-2]2-(tert-butoxycarbonyl)-2-azaspiro[3.3]heptane-6-carboxylic acid</strong> (35) was synthesized by following Ref: J. Org. Chem. 2010, 75, 5941-5952. To a solution of <strong>[1211526-53-2]2-(tert-butoxycarbonyl)-2-azaspiro[3.3]heptane-6-carboxylic acid</strong> (35) (0.5 g, 2.072 mmol) in DMF (1 mL) at 0C add TEA (0.578 mL, 4.14 mmol) and chloroacetonitrile (0.131 mL, 2.072 mmol)and stir at 0C for 2h. Reaction was quenched with ice and compound was extracted with etyhlacetate(4 X 50ml).organic layer was washed with brine , Organic layer was dried over sodium sulphate and concentrated under vacuum to gave 2-tert-butyl 6-(cyanomethyl) 2-azaspiro[3.3]heptane-2,6-dicarboxylate (1p) (0.4 g, 1.427 mmol, 68.9 % yield) 1H NMR (300 MHz, CDCl3): delta 7.06 -7.03 (m,1H), 4.93 (s, 2H), 3.81-3.78 (m, 1H), 3.18-3.12 (m, 1H), 2.34-2.13 (m, 6H), 1.91-1.82 (m, 2H), 1.23 (s, 9H). MS (ESI): 298.2 as [M+H2O] in +Ve mode. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With dimethylsulfide borane complex; In tetrahydrofuran; at 0 - 65℃;Inert atmosphere; | 2-(tert-Butoxycarbonyl)-2-azaspiro[3.3]heptane-6-carboxylic acid (900 mg, 3.73 mmol) was dissolved in THF (19 mL), and cooled to 0 C under an inert atmosphere. Borane dimethylsulfide complex (1.77 mL, 18.7 mmol, 2M in THF) was then added dropwise. The resulting solution was warmed to r.t. and stirred for 1 h, after which time the solution was heated to 65 C and refluxed overnight. The reaction mixture was then slowly added to a stirring solution of EtOH at 0 C and was allowed to stir for 30 min. Solvents were removed under reduced pressure, and the resulting residue was re-dissolved in DCM and washed with H2O (2x). The organic layer was concentrated to give the title compound as a colorless oil which was used without additional purification (847 mg, 100%). ES-MS [M+H]+ = 172.4 (minus t-butyl). |