Structure of 140645-23-4
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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| CAS No. : | 140645-23-4 |
| Formula : | C11H22N2O2 |
| M.W : | 214.30 |
| SMILES Code : | NC[C@@H]1CN(C(OC(C)(C)C)=O)CCC1 |
| MDL No. : | MFCD03839876 |
| InChI Key : | WPWXYQIMXTUMJB-SECBINFHSA-N |
| Pubchem ID : | 1502023 |
| GHS Pictogram: |
|
| Signal Word: | Warning |
| Hazard Statements: | H302 |
| Precautionary Statements: | P280-P305+P351+P338 |
| Num. heavy atoms | 15 |
| Num. arom. heavy atoms | 0 |
| Fraction Csp3 | 0.91 |
| Num. rotatable bonds | 4 |
| Num. H-bond acceptors | 3.0 |
| Num. H-bond donors | 1.0 |
| Molar Refractivity | 64.11 |
| TPSA ? Topological Polar Surface Area: Calculated from |
55.56 Ų |
| Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
2.71 |
| Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
0.92 |
| Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.21 |
| Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
1.15 |
| Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
0.69 |
| Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.34 |
| Log S (ESOL):? ESOL: Topological method implemented from |
-1.48 |
| Solubility | 7.03 mg/ml ; 0.0328 mol/l |
| Class? Solubility class: Log S scale |
Very soluble |
| Log S (Ali)? Ali: Topological method implemented from |
-1.67 |
| Solubility | 4.55 mg/ml ; 0.0212 mol/l |
| Class? Solubility class: Log S scale |
Very soluble |
| Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-1.33 |
| Solubility | 10.1 mg/ml ; 0.0471 mol/l |
| Class? Solubility class: Log S scale |
Soluble |
| GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
| BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
| P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
| CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
| CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
| CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
| CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
| CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
| Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.95 cm/s |
| Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
| Ghose? Ghose filter: implemented from |
None |
| Veber? Veber (GSK) filter: implemented from |
0.0 |
| Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
| Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
| Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
| PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
| Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
| Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
| Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.7 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 74% | With triethylamine; In dichloromethane; at 0 - 20℃; for 16h; | (R)-tert-Butyl 3-(aminomethyl)piperidine-l-carboxylate (1.00 g, 4.67 mmol) wasdissolved in 14 mL anhydrous CH2CI2 under an N2 atmosphere and cooled to 0 C. Triethylamine (1.30 mL, 945 mg, 9.34 mmol) was added followed by the dropwise addition of benzyl chloroformate (0.99 mL, 1.20 g, 7.00 mmol). After 16 h, the reaction was complete. The mixture was partitioned between H2O and CH2CI2, and separated, and the aqueous layer was extracted twice with CH2CI2. The organic layers were combined, dried over Na2S04, filtered, and concentrated to a light yellow oil. Purification via silica gel chromatography using 97% CH2Cl2/3% MeOH gave, benzyl ((i?)-l-(tert-butoxycarbonyl)piperidin-3-yl)methylcarbamate as a clear colorless oil (1.2 g, 74%). LC/MS: m/z 349.5 (M+H)+ at 3.21 min (10%-99% CH3CN (0.035% TFA)/H20 (0.05% TFA)). |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| With 5%-palladium/activated carbon; hydrogen; In methanol; at 20℃; for 9h; | (R)-tert-butyl3-(aminomethyl)piperidine-1 -carboxylate._(S)-tert-butyl 3-(azidomethyl)piperidine- 1 -carboxylate (5.38 g, 22.40 mmol) was dissolved in MeOH (50 ml), and then Pd/C (5% mol) was added, followed by stirring at room temperature under H2 (gas) for 9 hours. After the completion of the reaction, the reaction mixture was filtered through celite, followed by filtration and concentration under reduced pressure, and then the next reaction was advanced without purification.10238] ?H-NMR (300 MHz, CDC13) oe 4.02-3.73 (m, 2H),2.94-2.73 (m, 1H), 2.72-2.33 (m, 3H), 1.90-1.02 (m, 5H),1.44 (s, 9H) | |
| With palladium on activated charcoal; hydrogen; In methanol; at 20℃; for 9h; | [0368] (S) -tert-butyl 3- (azidomethyl) piperidine-1-carboxylate (5.38 g, 22.40 mmol) was dissolved in MeOH (50 ml) Pd / C (5% mol) And the mixture was stirred under H2 (gas) at room temperature for 9 hours. After completion of the reaction, after the Celite filter, Filtered, concentrated under reduced pressure, and the following reaction was carried out without purification | |
| With hydrogenchloride; sodium hydroxide; triphenylphosphine; In hydrous tetrahydrofuran; | (Step 6) Synthesis of (3R)-3-aminomethyl-1-(tert-butoxycarbonyl)-piperidine To a solution of 600 mg of (3S)-3-azidomethyl-1-(tert-butoxycarbonyl)piperidine in 12.5 ml of 20% hydrous tetrahydrofuran, 622 mg of triphenylphosphine was added at room temperature, followed by 45 minutes' refluxing under heating. The reaction liquid was rendered acidic by addition of 0.5 N hydrochloric acid, and successively washed with chloroform and ethyl acetate. Then 4N aqueous sodium hydroxide solution was added to the aqueous layer to render the latter basic, followed by extraction with chloroform and drying over anhydrous sodium sulfate. Distilling the solvent off under reduced pressure, 497 mg of the title compound was obtained. |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 86% | With potassium carbonate; In tetrahydrofuran; at 70℃; for 20h;Product distribution / selectivity; | Step 1 . Preparation of tert-butyl (3R)-3-ir(2-amino-5-bromobenzovl)amino1methvl|-piperidine-1 -carboxylate; O CH3[179] A mixture of 5-bromoisatoic anhydride (20.3 g, 84 mmol), tert-butyl (3R)-3-(aminomethyl)-piperidine-1-carboxylate (15.0 g, 70.0 mmol), potassium carbonate (19.3 g, 140 mmol), and THF(100 mL) was heated to 70C for 20 h, followed by cooling to it Water was added to give a clearbiphasic solution, and the mixture was stirred for 4 h while passing nitrogen through the reactionvessel to remove most of the organic solvent. The solid was collected by filtration, washed withcopious water, and air dried to give 24.9 g (86%) product. ES-MS m/z 312.3 ([MH2- BOC]+);HPLC RT (min) 3.26. |
| 80% | With potassium carbonate; In acetonitrile; at 70℃; for 15h;Product distribution / selectivity; | Step 1. Preparation of tert-butyl (3R)-3-{f(2-amino-5-bromobenzoyl)amino1 methyl)piperidine-1 -carboxylate; O CH3-N^'O[409] A solution of 5-bromoisatoic anhydride (30 g, 111 mmol), (R)-N-BOC-piperidine-3-methyl-amine (25 g, 111 mmol), and K2CO3 (31 g, 223 mmol) in acetonitrile (750 mL) was heated at 70C for 15 h to form a white precipitate. The solvent was concentrated to -300 mL of volume, and water (600 mL) was added. After the mixture was stirred for 30 min, the precipitate was collected by filtration to afford 37 g (80%) of the product as a white solid. ES-MS m/z312.2 ([MH2 - BOCf), HPLC RT (min) 3.58. |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| g)2) Analogously to e), f) and g)1), from t-butyl (S)-3-hydroxymethyl-1-piperidinecarboxylate there is obtained t-butyl (R)-3-aminomethyl-1-piperidinecarboxylate, [alpha]D25 =+23.0 (c=0.4, EtOH). |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 48% | Step 1 . Preparation of tert-butyl (3R)-3-r(6-bromo-2-isopropvl-4-oxoauinazolin-3(4H)-vl)methvl1piperidine-1-carboxvlate; O CH3[230] A mixture of 6-bromo-2-isopropyl-4H-3,1-benzoxazin-4-one (18.8 g, 70 mmol) (Example46, step 1) and <strong>[140645-23-4]tert-butyl (3R)-3-(aminomethyl)piperidine-1-carboxylate</strong> (18 g, 84 mmol) in toluenewas heated at 120C for 4 h. After removal of toluene under reduced pressure, ethyleneglycol(25 mL) and LiOH (3.35 g, 140 mmol) were added, and the mixture was heated at 130C for 5 h.The reaction mixture was cooled to rt, diluted with water, and extracted with DCM (3x). Thecombined organic extracts were washed with brine, dried over MgSO4, filtered, and concentratedunder reduced pressure. The crude product was purified by silica gel chromatography (20% ethylacetate in hexane) to afford 15.5 g (48%) of the product. ES-MS m/z 464.4 (MH+); HPLC RT61(min)4.01. |
[ 449185-77-7 ]
[ 140645-23-4 ]
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 69% | In xylene; for 5h;Heating / reflux; | Step 2. Preparation of tert-butyl (3R)-3-r(6-bromo-4-oxoauinazolin-3(4H)-vl)methvl1-piperidine-1 -carboxylate; [353] A mixture of 6-bromo-4H-3,1-benzoxazin-4-one (14.0 g, 61.94 mmol) (step 1) and tert-butyl (3R)-3-(aminomethyl)piperidine-1 -carboxylate (15.9 g, 74.33 mmol) was heated under refluxin xylene for 5 h. After cooling to rt, the organic solvent was removed under reduced pressure,and the crude material purified by silica gel column chromatography (elution with 40% EtOAc inhexane) to afford 18.2 g (69%) of the product as a yellow-brown oil. ES-MS m/z 322.2 ([MH2-BOC]+); HPLC RT (min) 3.34. |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 98% | In toluene; at 110℃; for 8h;Reflux; | The compound was made according to literature procedure with some modifications. Compound 11 (3.7 g, 10.98 mmol) was dissolved in toluene (125 ml). (R)-1-Boc-3-(aminomethyl)pyrrolidine (2.40 g, 11.21 mmol) was added and it was refluxed at 110 C. for 8 h. The reaction mixture was cooled down and solvent was removed. The precipitate was washed with hexane (50 ml) to give pure product as light yellow power with 98% yield. UP LC-MS (waters) method: 5-95% acetonitrile (0.1% TFA) in water (0.1% TFA), 3 mins run; Calculated m/z 552.1310 (MH+), Found m/z: 552.1366; RT (min): 2.68 |
| In toluene; for 4h;Heating / reflux; | Step 2. Preparation of tert-butvl (3R)-3-f((5-bromo-2-[(2.4-difluorobenzovl)-amino1-benzovllamino) methvllpiperidine-1 -carboxvlate; O[522] A solution of 6-bromo-2-(2,4-difluorophenyl)-4H-3,1-benzoxazin-4-one (7.00 g, 20.7 mmol)(step 1) and <strong>[140645-23-4]tert-butyl (3R)-3-(aminomethyl)piperidine-1-carboxylate</strong> (6.21 g, 29 mmol) in toluene(250 ml_) was heated to reflux for 4 h. The solvent was removed under reduced pressure to affordthe crude product which was used in the next step without further purification. ES-MS m/z 452.0([MH2- BOC]+); HPLC RT (min) 4.74. |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| In toluene; for 16h;Heating / reflux; | Step 2. Preparation of tert-butvl (3R)-3-fr6-hvdroxv-2-(2-methvlphenvl)-4-oxoquinazolin-3(4H)-vl1methvl)piperidine-1-carboxvlate; H[143] tert-Butyl (3R)-3-(aminomethyl)piperidine-1-carboxylate (11.61 g, 54.18 mmol) in toluene(50 mL) was added to 2-(2-methylphenyl)-4-oxo-4H-3,1-benzoxazin-6-yl acetate (8.00 g,27.09 mmol) (step 1), and the mixture was stirred at reflux for 16 h under a nitrogen atmosphere.The mixture was concentrated under reduced pressure. The resulting intermediate (8.50 g ,18.2 mmol) (yellow oil) was added to a dry round-bottom flask followed by ethylene glycol (50 mL)and LiOH (1.53 g, 36.4 mmol). This mixture was stirred at 135C for 16 h and subsequentlydiluted with DCM and water. The mixture was extracted with DCM (100 ml x 2), and thecombined organic layers were concentrated under reduced pressure. The crude product was thenpurified via silica gel column chromatography using ethyl acetate/hexanes (70:30; v/v). ES-MSmlz450.1 (MH+); HPLC RT (min) 3.15. |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 97% | In toluene; for 23h;Heating / reflux; | Step 2. Preparation of tert-butyl (3R)-3-(([5-bromo-2-(isobutvrvlamino)benzovl1amino)-methvl)piperidine-1-carboxvlate; A J<^CH3CH3[290] A solution of 6-bromo-2-isopropyl-4H-3,1-benzoxazin-4-one (20 g, 74.6 mmol) (step 1) and<strong>[140645-23-4]tert-butyl (3R)-3-(aminomethyl)piperidine-1-carboxylate</strong> (7 g, 33 mmol) in toluene (500 ml) washeated to reflux (130C, oil bath) for 4 h. Then, an additional 7 g of tert-butyl (3R)-3-(amino-methyl)piperidine-1-carboxylate was added. After 4 h of heating under reflux, 7 g of <strong>[140645-23-4]tert-butyl (3R)-3-(aminomethyl)piperidine-1-carboxylate</strong> was added, and the solution were heated under reflux foranother 15 h. The solvent was concentrated under reduced pressure, and the residue was purifiedby column chromatography (200 g of silica gel) using a gradient from 5% to 20% EtOAc inhexanes to afford 35 g (97% yield) of the product as a foam. |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| c) A solution of the product from b) in 100 ml of ethanol is hydrogenated in the presence of 0.6 g of platinum oxide under 1 bar of hydrogen. Then, the reaction mixture is filtered over silica gel and eluted with methanol. There are obtained 3.4 g of t-butyl (R)-3-aminomethyl-1-piperidinecarboxylate, [alpha]D25 =+23.0 (c=0.4, EtOH). |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 100% | With potassium carbonate; In acetonitrile; for 5h;Heating / reflux; | A mixture of 1 ,1-dimethylethyl (3R)-3-(aminomethyl)-1-piperidinecarboxylate (3.50 g, 16.3 mmol, Ennova MedChem Group, Inc.), 1-fluoro-2-nitrobenzene (3.46 g, 24.5 mmol, Avocado Research Chemicals Ltd.), and K2CO3 (11.3 g, 81.5 mmol) in 40 mL of anhydrous acetonitrile was heated to reflux with stirring. After 5 hours the mixture was cooled to RT and filtered through a medium fritted funnel to remove solids. The EPO <DP n="88"/>filter cake was rinsed with an additional 40 mL portion of acetonitrile and the filtrate concentrated to dryness at reduced pressure. The crude oil was subjected to flash chromatography (silica gel, gradient elution of hexane to 6:4 hexane/EtOAc) to afford 1 ,1-dimethylethyl (3R)-3-[(2-nitrophenyl)amino]methyl}-1-piperidinecarboxylate as a viscous, yellow oil in quantitative yield. 1H NMR (DMSOd6): delta 8.19 (br s, I H), 8.05(d, 1H), 7.52 (t, 1 H), 7.06 (d, 1 H), 6.68 (t, 1 H), 3.93-3.58 (m, 2H), 3.29-3.20 (m, 2H), 2.89-2.48 (m, 2H), 1.85-1.68 (m, 2H), 1.60 (m, 1H), 1.50-1.10 (br s, 11 H). MS m/z 358 (M+Na). |
| 100% | With potassium carbonate; In acetonitrile; for 5h;Heating / reflux; | A mixture of 1,1-dimethylethy. (3R)-3-(aminomethyl)-1-piperidinecarboxylate (3.50 g, 16.3 mmol, Ennova MedChem Group, Inc.), 1-fluoro-2-nitrobenzene (3.46 g, 24.5 mmol, Avocado Research Chemicals Ltd.), and K2C03 (11.3 g, 81.5 mmol) in 40 mL of anhydrous acetonitrile was heated to reflux with stirring. After 5 hours the mixture was cooled to RT and filtered through a medium fritted funnel to remove solids. The filter cake was rinsed with an additional 40 mL portion of acetonitrile and the filtrate concentrated to dryness at reduced pressure. The crude oil was subjected to flash chromatography (silica gel, gradient elution of hexane to 6:4 hexane/EtOAc) to afford 1,1-dimethylethyl (3ft)-3-[(2-nitrophenyl)amino]methyl}-1-piperidinecarboxylate as a viscous, yellow oil in quantitative yield. 1H NMR (DMSO-cfe): 5 8.19 (br s, 1H), 8.05 (d, 1H), 7.52 (t, 1H), 7.06 (d, 1H), 6.68 (t, 1H), 3.93-3.58 (m, 2H), 3.29-3.20 (m, 2H), 2.89-2.48 (m, 2H), 1.85-1.68 (m, 2H), 1.60 (m, 1H), 1.50-1.10 (brs, 11H). MS m/z 358 (M+Na). |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 100% | With triethylamine; In dichloromethane; at 20℃; for 3h; | (R)-3-(Acetylamino-methyl)-piperidine-1-carboxylic acid te/f-butyl esterTo a solution of 300 mg (1 ,4 mmol) (R)-3-aminomethyl-piperidine-1-carboxylic acid te/f-butyl ester in 10 ml methylene chloride is first added 370 mul (2,1 mmol) triethylamine and then slowly 0,110 ml (1 ,68 mmol) acetyl chloride. The reaction mixture is stirred at room temperature for three hours. Water is added afterwards. The organic phase is dried over sodium sulphate and concentrated.Yield: 370mg (103% of theory)EII Mass spectrum: m/z = 257 [M+H]+ |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 97% | With N-ethyl-N,N-diisopropylamine; In tetrahydrofuran; at -70 - 20℃; | (4.1.1 ) (f?)-te/f-butyl 3-((5-bromo-2-chloropyrimidin-4-ylamino)methyl)piperidine-1- carboxylate. <n="42"/> To a stirred solution of 5-bromo-2,4-dichloropyrimidine (0.25 g, 1.097 mmol) in THF (8 mL) at -700C was added dropwise a solution of (3R)-3-(aminomethyl)-1-(t- butoxycarbonyl)piperidine (3.0 g, 14 mmol) and DIEA (0.248 mL, 1.426 mmol) in THF (50 mL). The reaction mixture was stirred at -700C and then allowed to warm up to room temperature overnight. The reaction mixture was diluted with EtOAc and washed with saturated NH4CI solution (1x) and brine (1x). The organic layer was dried (Na2SO4), filtered and concentrated in vacuo. The crude product was purified by column chromatography (SiO2, heptane/EtOAc; 10% to 50% EtOAc as mobile phase) and the title compound was obtained in 97% yield (0.43 g, 1.067 mmol). LC-MS: peak at 4.03 min., mass [M+H] = 405. |
[ 85-44-9 ]
[ 140645-23-4 ]
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| In toluene; at 20℃; for 67h;Reflux; | Preparation 3: l-C^-l-Pfperidiii-S-yiiiietliylisoiKdo.e-ljS-diooe To (jR)-3-aminomethylpiperidine-l-carboxylic acid ½ri-butyl ester (lOg, 46.7mmol) in PhMe (lOOmL) was added phthalic anhydride (6.92g (46,7mmol). The mixture was heated under reflux for 3h in a flask fitted to a Dean-Stark trap and then stirred at rt for 64h, The solvent was removed in vacuo to give (i?)-3-(l,3-dioxo ,3-dihydroisomdol-2- ylrnethyl)piperidine-1 -carboxylic acid /en-butyl ester to which was added DCM (lOOmL). TFA (50mL) was then added over 0.5h at rt and after Ih the solvent was removed in vacuo. DCM and 2M K7CO3 were added and the mixture extracted, with DCM. The combined organic phase was washed with 2M K2CO3, brine and dried (MgS04). The solvent was removed in vacuo to give the title compound: RT - 1.93mm; m/z (ES+) = 245.1 [M + H]+. |
[ 140645-23-4 ]

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