Structure of 168395-26-4
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CAS No. : | 168395-26-4 |
Formula : | C5H8O3 |
M.W : | 116.12 |
SMILES Code : | O=C(O)[C@H]1CCOC1 |
MDL No. : | MFCD07369984 |
InChI Key : | BOTREHHXSQGWTR-BYPYZUCNSA-N |
Pubchem ID : | 40784874 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H303-H315-H319-H335 |
Precautionary Statements: | P261-P264-P271-P280-P302+P352-P304+P340+P312-P305+P351+P338+P310-P312-P332+P313-P403+P233-P405-P501 |
Num. heavy atoms | 8 |
Num. arom. heavy atoms | 0 |
Fraction Csp3 | 0.8 |
Num. rotatable bonds | 1 |
Num. H-bond acceptors | 3.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 26.89 |
TPSA ? Topological Polar Surface Area: Calculated from |
46.53 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
0.91 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
-0.26 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
0.11 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
-0.38 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
0.54 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
0.18 |
Log S (ESOL):? ESOL: Topological method implemented from |
-0.33 |
Solubility | 54.3 mg/ml ; 0.468 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-0.26 |
Solubility | 64.0 mg/ml ; 0.551 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
0.18 |
Solubility | 177.0 mg/ml ; 1.52 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-7.19 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.56 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.46 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Example 5 5-Butyl-9-[1-(2,4-dimethyl-pyridine-3-carbonyl)-4-methyl-piperidin-4-yl]-3-[(R)-1-(tetrahydro-furan-3-yl)methyl]-3,9-diaza-spiro[5.5]undecan-2-one (I-14) step 1-(S)-Tetrahydro-3-furanoic acid (3.3 g, 29.1 mmol) was dissolved in freshly distilled THF (15 mL) and added to a slurry of NaBH4 (2.6 g, 69 mmol) in freshly distilled THF (15 mL) cooled to 0 C. and maintained under a N2 atmosphere. The mixture was stirred for 10 min and then a solution of I2 (7.3 g, 29 mmol) in anhydrous THF (15 mL) was added dropwise over a 30 min period. When gas evolution ceased the solution was heated at reflux for 12 h. The reaction mixture was cooled, the solvent evaporated and the residue was taken up in 20% aqueous KOH and stirred for 4 h at RT. The aqueous solution was continuously extracted with DCM for 2 d and the resulting extract was dried (MgSO4), filtered and evaporated to afford 2.5 g of (R)-20: MS=(M+H)=103; NMR=1H nmr δ 3.93-3.51 (m, 6H), 2.2-2.0 (m, 1H), 1.98-1.71 (m, 2H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
51% | Example 29 (S)-Tetrahydro-furan-3-carboxylic acid {4-[4-(diethylcarbamoyl-phenyl-methyl)-piperazin-1-yl]-3-fluoro-phenyl}-amide A mixture of 2-[4-(4-amino-2-fluoro-phenyl)-piperazin-1-yl]-N,N-diethyl-2-phenyl-acetamide (0.30 mmol) and DCC (1.0 mmol) in DCE (10 mL) was stirred at rt for 1 h, then was treated with (S)-tetrahydro-furan-3-carboxylic acid (1.0 mmol), and was stirred at rt for 16 h. The mixture was concentrated, and the residue was purified by PTLC to provide the title compound (74 mg, 51%). MS (ESI): mass calcd. for C27H35FN4O3, 482.27; m/z found, 483.4 [M+H]+. 1H NMR (CDCl3): 7.75-7.60 (m, 1H), 7.55-7.26 (m, 5H), 7.10-7.00 (m, 1H), 6.84 (t, J=9.0, 1H), 4.21 (s, 1H), 4.05-3.72 (m, 4H), 3.50-3.10 (m, 4H), 3.10-2.95 (m, 5H), 2.73-2.60 (m, 4H), 2.28-2.18 (m, 2H), 1.14-1.02 (m, 6H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With palladium on activated charcoal; hydrogen; In ethanol; at 20℃; for 18h; | c) (S)-Tetrahydro-furan-3-carboxylic acid/(R)-Tetrahydro-furan-3-carboxylic acidA solution of an enantiomerically pure tetrahydro-furan-3-carboxylic acid benzyl ester (peak 1 or peak 2, 200 mg, 0.97 mmol), Pd/C (103 mg, 0.97 mmol) in EtOH (2 ml) was hydrogenated with H2 at rt for 18 h. Filtration of the reaction mixture and concentration of the filtrate afforded the title compound as colourless oil (125 mg (Peak 1), 111 mg (Peak 2), crude). [0808] 1H NMR (both enantiomers) (400 MHz, DMSO-d6): δ 12.40 (br s, 1H), 3.84-3.59 (m, 4H), 3.00 (m, 1H), 2.08-1.92 (m, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
20 mg | With N-ethyl-N,N-diisopropylamine; HATU; In N,N-dimethyl-formamide; at 20℃; for 2h; | To a solution of (S) -N- (5-chloro-2-methyl-3- ( (3-methylpiperazin-1-yl) methyl) phenyl) -3-cyanobenzamide (D52 150 mg) in DMF (50 mL) was added (S) -tetrahydrofuran-3-carboxylic acid (54.6 mg) HATU (149 mg) and DIPEA (0.137 mL) . The mixture was stirred at RT for 2 hours. Water was added. The solution was extracted with EA (3×50 mL) . The filtrate was washed with sat. NaHCO3solution water and brine. The resulting solution was dried over MgSO4. After filtration the residue was purified by chiral preparative HPLC to afford the title compound (20 mg) as a white solid.1H NMR (400 MHz CDCl3) 8.19 (s 1H) 8.15 (d J 7.8 Hz 1H) 7.89 (d J 7.8 Hz 1H) 7.82 (brs 1H) 7.76 (d J 7.5 Hz 1H) 7.68 (t J 7.8 Hz 1H) 7.18 (d J 2.0 Hz 1H) 4.77 (brs 0.5H) 4.39 (d J 14.1 Hz 0.5H) 4.07-3.79 (m 4.5H) 3.64 (d J 13.6 Hz 0.5H) 3.52-3.32 (m 2.5H) 3.27-3.14 (m 1H) 2.98-2.66 (m 2.5H) 2.32 (s 3H) 2.26-2.00 (m 4H) 1.36-1.22 (m 3H) . MS (ESI) C26H29ClN4O3requires 480 found 481 [M+H]+. |
20 mg | With N-ethyl-N,N-diisopropylamine; N-[(dimethylamino)-3-oxo-1H-1,2,3-triazolo[4,5-b]pyridin-1-yl-methylene]-N-methylmethanaminium hexafluorophosphate; In N,N-dimethyl-formamide; at 20℃; for 2h; | In the containment (S)-3-cyano-N-(5-chloro-methyl-3-((3-methylpiperazin-1-yl)methyl)phenyl)benzamide (D52, 150 mg) of DMF (50 mL) was added <strong>[168395-26-4](S)-tetrahydrofuran-3-carboxylic acid</strong> (54.6 mg)(149 mg) and DIPEA (0.137 mL) were stirred at room temperature for 2 hours. Add water. The solution was extracted using ΕΑ (3 x 50 mL). The filtrate was washed with saturated NaHC03 solution, water and brine. The resulting solution was dehydrated by MgS04. After filtration, the residue was purified by palm preparative HPLC to give the title compound (20 mg) as a white solid |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
20 mg | With N-ethyl-N,N-diisopropylamine; HATU; In N,N-dimethyl-formamide; | To a solution of (R) -N- (5-chloro-2-methyl-3- ( (3-methylpiperazin-1-yl) methyl) phenyl) -5-fluoro-6-methylnicotinamide 2 Trifluoroacetic acid salt (D92 415 mg) in DMF (4 mL) (S) -tetrahydrofuran-3-carboxylic acid (137.4 mg 97ee) solution in DMF (1 mL) was added then HATU (741.3 mg) and DIPEA (0.55 ml) were added. The reaction mixture was stirred overnight. The mixture was purified by preparative HPLC and further purified by chiral SFC to afford the title compound (20 mg) .1H NMR (400 MHz MeOD-d4) 8.87 (s 1H) 8.07 (dd J9.8 1.7 Hz 1H) 7.36 (d J2.2 Hz 1H) 7.31 (d J2.0 Hz 1H) 4.67 (brs 0.5H) 4.32 (d J13.7 Hz 0.5H) 4.24 (brs 0.5H) 4.06-3.75 (m 4.5H) 3.57-3.46 (m 2H) 3.46-3.34 (m 1.5H) 3.05-2.95 (m 0.5H) 2.86 (d J11.2 Hz 1H) 2.79-2.70 (m 1H) 2.60 (d J2.9 Hz 3H) 2.31 (s 3H) 2.26-1.97 (m 4H) 1.40-1.19 (m 3H) .19F NMR (376 MHz MeOD-d4) -126.9. MS (ESI) C25H30ClFN4O3requires 488 found 489 [M+H]+. |
20 mg | With N-ethyl-N,N-diisopropylamine; N-[(dimethylamino)-3-oxo-1H-1,2,3-triazolo[4,5-b]pyridin-1-yl-methylene]-N-methylmethanaminium hexafluorophosphate; In N,N-dimethyl-formamide; | In the containment (R)-N-(5-chloro-2-methyl-3-((3-methylpiperazine-1-yl)methyl)phenyl)-5-fluoro-6-methylnicotinamide ditrifluoroacetate (D92, 415 mg) of DMF (4 mL) was added <strong>[168395-26-4](S)-tetrahydrofuran-3-carboxylic acid</strong> (137.4 mg, 97% from) of DMF (1 mL) solution, add HATU (741.3 mg) with DIPEA (0.55 ml). The reaction mixture was stirred overnight. The mixture was purified by preparative HPLC Purified with palm SFC to give the title compound (20 mg) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
81% | A solution of <strong>[168395-26-4](S)-tetrahydrofuran-3-carboxylic acid</strong> (0.036 g, 0.31 mmol), HATU (0.12 g, 0.31 mmol) and triethylamine (0.11 mL, 0.77 mmol) in DMF (2 mL) was stirred under nitrogen for 20 minutes. Then (1S,3R)-3-amino-N-(5-chloro-4-(5,5-dimethyl-5,6-dihydro-4H-pyrrolo[1,2-b]pyrazol-3-yl)pyridin-2-yl)cyclohexanecarboxamide (0.10 g, 0.26 mmol; prepared according to Example 14 using 5,5-dimethyl-3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-5,6-dihydro-4H-pyrrolo[1,2-b]pyrazole prepared as described in Example 23) in DMF (1 mL) was added, and the resulting mixture was stirred under these conditions for 30 minutes. The mixture was concentrated under reduced pressure, and the resulting residue was purified by flash C18 chromatography, elution gradient 20 to 60% MeCN in water containing 1% NH4OH. Pure fractions were concentrated under reduced pressure to afford (S)-N-((1R,3S)-3-((5-chloro-4-(5,5-dimethyl-5,6-dihydro-4H-pyrrolo[1,2-b]pyrazol-3-yl)pyridin-2-yl)carbamoyl)cyclohexyl)tetrahydrofuran-3-carboxamide (0.10 g, 81%) as a white solid. 1H NMR (400 MHz, DMSO-d6, 30 C.) 1.05-1.16 (1H, m), 1.21-1.41 (9H, m), 1.72-1.83 (3H, m), 1.87-2.04 (3H, m), 2.57-2.66 (1H, m), 2.82-2.91 (3H, m), 3.54-3.77 (4H, m), 3.83 (1H, t), 3.95 (2H, s), 7.83 (1H, d), 7.99 (1H, s), 8.25 (1H, s), 8.35 (1H, s), 10.54 (1H, s). m/z: ES+[M+H+]486. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
44% | With N-ethyl-N,N-diisopropylamine; HATU; In N,N-dimethyl-formamide; at 17 - 25℃; for 3h; | HATU (140 mg, 0.37 mmol) was added to a solution of (1S,3R)-3-amino-N-(5-chloro-4-(4,5,6,7-tetrahydropyrazolo[1,5-a]pyridin-3-yl)pyridin-2-yl)cyclohexanecarboxamide dihydrochloride (150 mg, 0.34 mmol; prepared according to Example 3 b), <strong>[168395-26-4](S)-tetrahydrofuran-3-carboxylic acid</strong> (43 mg, 0.37 mmol) DIPEA (0.18 mL, 1.0 mmol) and DMF (1.2 mL). The reaction was stirred at r.t. for 3 h. The reaction was diluted with EtOAc and washed with saturated aqueous sodium hydrogencarbonate and saturated aqueous sodium chloride. The organic layer was dried over sodium sulfate, filtered and concentrated under reduced pressure. The resulting residue was purified by flash silica chromatography, elution gradient 80 to 100% EtOAc in hexane, to afford (S)-N-((1R,3S)-3-((5-chloro-4-(4,5,6,7-tetrahydropyrazolo[1,5-a]pyridin-3-yl)pyridin-2-yl)carbamoyl)cyclohexyl)tetrahydrofuran-3-carboxamide (70 mg, 44%). 1H NMR (300 MHz, CDCl3, 27 C.) 1.09-1.26 (m, 1H), 1.38-1.59 (m, 3H), 1.87-2.05 (m, 5H), 2.07-2.21 (m, 4H), 2.29 (1H, d), 2.38-2.58 (1H, m), 2.82-2.99 (4H, m), 3.78-4.00 (4H, m), 4.24 (2H, t), 5.63 (1H, d), 7.92 (1H, s), 8.25 (1H, s), 8.27 (1H, s), 8.40 (1H, br s). m/z: ES+[M+H]+ 472. Optical Rotation: (0881) Concentration: 0.1 g/dL Lamp: Sodium Wavelength: 589 nm Temperature: 20 C. (0882) Path length: 10 cm Cell volume: 1 mL Solvent: DMSO (0883) [α]=+60.4 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
40% | With triethylamine; N-[(dimethylamino)-3-oxo-1H-1,2,3-triazolo[4,5-b]pyridin-1-yl-methylene]-N-methylmethanaminium hexafluorophosphate; In N,N-dimethyl-formamide; at 20℃; for 2h;Inert atmosphere; | A solution of (R)-5-(2-methyl-4-phenoxyphenyl)-4-oxo-N-(piperidin-3-yl)-4,5-dihydro-3H-1- thia-3,5,8-triazaacenaphthylene-2-carboxamide (Example 869, 120 mg, 0.24 mmol), (35)- tetrahydrofuran-3-carboxylic acid (100 mg, 0.86 mmol), HATU (150 mg, 0.40 mmol), and triethylamine (80 mg, 0.79 mmol) in DMF (5 mL) was reacted at rt for 2 h. The reaction was quenched with H20 (10 mL), extracted with DCM, dried over anhydrous Na2SC>4, filtered, and concentrated to dryness. The residue was purified by flash column chromatography to yield the title compound as an off white solid (57 mg, 40% yield). MS (ESI): mass calcd. for C32H31N5O5S, 597.7; m/z found, 598.2 [M+H]+. 1H NMR (400 MHz, CD3OD): δ 8.32-8.27 (m, 1H), 7.42-7.29 (m, 3H), 7.19-7.09 (m, 1H), 7.09-7.00 (m, 3H), 6.97-6.90 (m, 1H), 6.04-5.98 (m, 1H), 4.60-4.31 (m, 1H), 4.26-4.08 (m, 1H), 3.94-3.85 (m, 1H), 3.85-3.66 (m, 4H), 3,52-3.37 (m, 1H), 3.15-2.92 (m, 1H), 2.81 -2.59 (m, 1H), 2.15-1.97 (m, 6H), 1.89-1.73 (m, 1H), 1.73-1.41 (m,2Η). |
40% | With triethylamine; N-[(dimethylamino)-3-oxo-1H-1,2,3-triazolo[4,5-b]pyridin-1-yl-methylene]-N-methylmethanaminium hexafluorophosphate; In N,N-dimethyl-formamide; at 20℃; for 2h; | A solution of (R) -5- (2-methyl-4-phenoxyphenyl) -4-oxo-N- (piperidin-3-yl) -4, 5-dihydro-3H-1-thia-3, 5, 8-triazaacenaphthylene-2-carboxamide (Example 869, 120 mg, 0.24 mmol) , (3S) -tetrahydrofuran-3-carboxylic acid (100 mg, 0.86 mmol) , HATU (150 mg, 0.40 mmol) , and triethylamine (80 mg, 0.79 mmol) in DMF (5 mL) was reacted at rt for 2 h. The reaction was quenched with H2O (10 mL) , extracted with DCM, dried over anhydrous Na2SO4, filtered, and concentrated to dryness. The residue was purified by flash column chromatography to yield the title compound as an off white solid (57 mg, 40yield) . MS (ESI) : mass calcd. for C32H31N5O5S, 597.7 m/z found, 598.2 [M+H]+.1H NMR (400 MHz, CD3OD) : δ 8.32-8.27 (m, 1H) , 7.42-7.29 (m, 3H) , 7.19-7.09 (m, 1H) , 7.09-7.00 (m, 3H) , 6.97-6.90 (m, 1H) , 6.04-5.98 (m, 1H) , 4.60-4.31 (m, 1H) , 4.26-4.08 (m, 1H) , 3.94-3.85 (m, 1H) , 3.85-3.66 (m, 4H) , 3.52-3.37 (m, 1H) , 3.15-2.92 (m, 1H) , 2.81-2.59 (m, 1H) , 2.15-1.97 (m, 6H) , 1.89-1.73 (m, 1H) , 1.73-1.41 (m, 2H) . |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
19% | With 2,4,6-tripropyl-1,3,5,2,4,6-trioxatriphosphinane-2,4,6-trioxide; N-ethyl-N,N-diisopropylamine; In N,N-dimethyl-formamide; at 110℃; for 15h; | 3-am ino-4-[(2 R, 4R)-2-m ethyltetrahydro-2 H-pyran-4-yl]am ino}qu md ine-6-carbonitrile (50 mg, 0.18 mmcl) and <strong>[168395-26-4](S)-tetrahydrofuran-3-carboxylic acid</strong> (30.8 mg,0.266 mmcl) were added into DMF (2 mL), followed by T3P in DMF (0.277 mL, 0.44 mmol, 1.6 M) and finally DIEA (68 mg, 0.531 mmol). The mixture was then heated to110 C for 15 hours. LCMS showed the reaction was complete. The mixture was poured into water (10 mL) and extracted with EtOAc (10 mL x 3), the organic layer was dried over anhydrous Na2SO4 and concentrated under reduced pressure to give the crude product, then purified by preparative HPLC (Waters XBridge Prep OBD C18 150 x 30 mm, 5u; water (0.05% ammonia hydroxide v/v) ACN 25 mL/min). Concentrated andthen lyophilized to afford the desired product as white solid (12.2 mg, 19% yield). 1H NMR (400 MHz, DMSO-d6) O 1.25 (d, J = 6.1 Hz, 3H), 1.90-2.27 (m, 3H),2.29-2.41 (m, 1H), 2.41-2.49 (m, 2H), 3.78 (dd, J = 25.7, 13.5 Hz, 2H), 3.91 (q, J = 7.4Hz, 1H), 4.00 (t, J = 7.5 Hz, 2H), 4.10 (t, J = 7.5 Hz, 1H), 4.18 (m, 1H), 4.25 (t, J = 7.7Hz, 1 H), 5.31 (b, 1 H), 8.03 (dt, J = 8.8, 2.0 Hz, 1 H), 8.31 (dd, J = 8.7, 2.9 Hz, 1 H), 9.02(5, 1H), 9.34 (d, J = 2.1 Hz, 1H). LCMS Column: Waters XBridge C18 50 x 2.0 mm, 5um; Mobile phase: A) 0.1% FA in Water; B) 0.1% FA in ACN. Gradient: 1% B increase to 5% B within 0.6 mm; 5% B increase to 100% B within 3.4 mm; Flow rate 0.8 mL/min MS Ionization: ESI. HPLC: HPLC-AE Ultimate XB-C18, 3um, 3.0 x 50 mm; Mobile phase: 1.0% ACN in water (0.1% TFA) to 5% ACN in water (0.1%TFA) in 1 mm, thenfrom 5% ACN in water (0.1% TFA) to 100% ACN (0.1% TFA) in 5 minutes; hold at100% ACN (0.1% TFA)for2 minutes; Flow rate: 1.2 mL/min. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
52% | With 2,4,6-tripropyl-1,3,5,2,4,6-trioxatriphosphinane-2,4,6-trioxide; N-ethyl-N,N-diisopropylamine; In toluene; at 60 - 100℃; for 5.5h; | To a Toluene (3.00 mL, c=0.108 M) solution 6-(difluoromethyl)-N4-((2R,4R)-2- methyltetrahydro-2H-pyran-4-yl)quinoline-3,4-diamine (0.100 g, 0.325 mmol) was added <strong>[168395-26-4](S)-tetrahydrofuran-3-carboxylic acid</strong> (0.039 g, 0.342 mmol, 1.05 eq.), N-ethyl-Nisopropylpropan-2-amine (0.046 g, 0.358 mmol, 1.10 eq.), and lastly 2,4,6-tripropyl- 1 ,3,5,2,4,6-trioxatriphosphorinane-2,4,6-trioxide (0.228 g, 0.358 mmol, 1.10 eq.). Theresulting solution was heated to 60 C for 90 mm. Then the temperature of the reaction was increased to 100 C and the reaction mixture was stirred at that temperature over4h. The reaction mixture was partitioned between EtOAc (10 mL) and NaHCO3 (aq., sat’d., 10 mL). The organic layer was separated, dried over Na2SO4, filtered and concentrated under reduced pressure to yield a dark orange oily residue. Purificationvia regular silica column chromatography (0 to 15% of MeOH in DCM) yielded 8-(difluorom ethyl)-1 -((2R,4R)-2-m ethyltetrahydro-2 H-pyran-4-yl)-2-(( R)-tetrahydrofuran-3-yl)-1H-imidazo[4,5-c]quinoline as an off-white solid (0.065 g, 0.168 mmol, 52% yield).HNMR 400 MHz, CD3OD) O ppm 1.36 (d, J=6.53 Hz, 3 H) 1.97-2.23 (m, 2 H) 2.38-2.53(m, 2 H) 2.40-2.66 (m, 3 H) 2.80 (br s, 1 H) 3.81-3.93 (m, 2 H) 4.00-4.09 (m, 1 H) 4.11-4.25 (m, 3 H) 4.29-4.39 (m, 2 H) 5.33 (br s, 1 H) 6.94-7.26 (m, 1 H) 7.92 (d, J=8.53 Hz,1 H) 8.34 (d, J=8.53 Hz, 1 H) 8.84 - 9.10 (m, 1 H) 8.99 (br s, 1 H) 9.24 (5, 1 H)); 19F NMR 376 MHz, CD3OD) O ppm -113.72 to -108.29 (m, 1 F); LCMS MS 388.0 M+H. |
Yield | Reaction Conditions | Operation in experiment |
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With 2,4,6-tripropyl-1,3,5,2,4,6-trioxatriphosphinane-2,4,6-trioxide; N-ethyl-N,N-diisopropylamine; In ethyl acetate; N,N-dimethyl-formamide; at 110℃; for 2h; | General procedure: To a solution of an appropriate acid (i.e. R1CO2H, 0.422 mmol) in N,Ndimethylformamide (2 mL) was added diamine (137 mg, 0.421 mmol), N,Ndiisopropylethylamine (161 mg, 1.25 mmol), and 2,4,6-tripropyl-1 3,5,2,4,6- trioxatriphosphinane 2,4,6-trioxide (50% solution in ethyl acetate, 0.39 mL, 0.655 mmol).The reaction mixture was stirred for 2 hours at 110 C, whereupon it was diluted with water (80 mL) and extracted with EtOAc (3 x 80 mL). The combined organic layers were concentrated in vacuo and purified by reversed phase HPLC (Column: Agela Durashell, 5 pm; Mobile phase A: 0.05% ammonium hydroxide in water; Mobile phase B:acetonitrile), providing the product as a pale grey or white solid. 1H NMR (400 MHz, CDCI3) O 1.37 (d, J = 6.1 Hz, 3H), 1.81 -2.19 (m, 2H), 2.39-2.65 (m, 3H), 2.80 (b, 1H), 3.65-3.81 (m, 2H), 3.85 (b, 1H), 4.07 (dt, J = 8.5, 7.1 Hz,1H), 4.18 (q, J = 7.4 Hz, 2H), 4.26-4.47 (m, 2H), 5.02 (b, 1H), 7.87 (dd, J = 8.8, 1.9 Hz,1 H), 8.40 (d, J = 8.7 Hz, 1 H), 8.99 (b, 1 H), 9.39 (5, 1 H). LCMS: MS 406.0 M+H. Mobilephase: A) 0.1% FA in Water; B) 0.1% FA in ACN. Gradient: 1% B increase to 5% Bwithin 0.6 mm; 5% B increase to 100% B within 3.4 mm; Flow rate 0.8 mL/min. HPLC:3.87/10 mm, 95.87% purity. HPLC-AE Ultimate XB-C18, 3um, 3.0 x 50 mm. Mobile phase:1.0% ACN in water (0.1% TFA) to 5% ACN in water (0.1% TFA) in 1 mm; then from 5% ACN in water (0.1% TFA) to 100% ACN (0.1% TFA) in 5 minutes; hold at 100% ACN (0.1% TFA)for2 minutes; Flow rate 1.2 mL/min. |
Yield | Reaction Conditions | Operation in experiment |
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15% | With N-ethyl-N,N-diisopropylamine; HATU; In N,N-dimethyl-formamide; at 20℃; for 3h; | General procedure: A mixture of (3R)-tetrahydrofuran-3-carboxylic acid (4.5 mg, 0.039 mmol) (3568) (commercially obtained from Ark Pharm, Arlington Heights, IL) and HATU (15 mg, 0.039 mmol) in DMF (0.5 mL) was added to a solution of (S)-(3-aminoazetidin-l-yl)(2-((l-(5- fluoropyridin-3-yl)ethyl)amino)-6-methylthieno[3,2-<i]pyrimidin-4-yl)methanone (3569) trihydrochloride (15 mg, 0.03 mmol) and DIEA (37 uL, 0.21 mmol) in DMF (0.3 mL). The resulting mixture was stirred at room temperature for 3 hours, concentrated on rotary evaporator, and the residue was purified by flash chromatography on silica gel eluting with 0% to 10% methanol in DCM to provide compound 598 (70% yield). NMR (400 MHz, CDCb) δ 1.62 (3H, dd, J= 7.2 Hz), 2.17-2.21 (2H, m), 2.60 (3H, t, J= 0.8 Hz), 2.94-2.98 (1H, m), 3.80-4.03 (5H, m), 4.15-4.40 (1H, m), 4.55 (1H, t, J= 9.2 Hz), 4.66-4.71 (1H, m), 4.65-5.05 (1H, m), 5.15 (1H, q, J= 7.2 Hz), 5.34 (1H, dd, J= 19.2, 6.4 Hz), 6.21 (1H, dd, J = 49.6, 6.4 Hz), 6.84 (1H, d, J= 0.8 Hz), 7.40 (1H, m), 8.33 (1H, d, J= 2.8 Hz), 8.47 (1H, d, J= 6.4 Hz) ppm. MS m/z = 485.1 [M+H+]. |
Yield | Reaction Conditions | Operation in experiment |
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Example 10 (S)-2-((2-ethyl-5-(6-(tetrahydrofuran-3-carbonyl)-2,6-diazaspiro[3.3]heptan-2-yl)pyrazolo[1,5-a]pyridin-3-yl)(methyl)amino)-4-(4-fluorophenyl)thiazole-5-carbonitrile (Compound 10) The title compound was prepared was prepared from 9c (58 mg, 0.1 mmol) and <strong>[168395-26-4](S)-tetrahydrofuran-3-carboxylic acid</strong> in a manner analogous to Example 9. The Compound 10 was isolated as a light brown solid (50 mg, 85%) and the spectra were the same as Compound 9. |
Yield | Reaction Conditions | Operation in experiment |
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Example 45 (S)-2-((2-ethyl-7-methyl-5-(6-(tetrahydrofuran-3-carbonyl)-2,6-diazaspiro[3.4]octan-2-yl)pyrazolo[1,5-a]pyridin-3-yl)(methyl)amino)-4-(4-fluorophenyl)thiazole-5-carbonitrile (Compound 45) Compound 45 was prepared from 44b and <strong>[168395-26-4](S)-tetrahydrofuran-3-carboxylic acid</strong> in a manner analogous to Example 31. 1H NMR (400 MHz, CDCl3) δ 8.15 (dd, J=8.8, 5.4 Hz, 2H), 7.15 (t, J=8.6 Hz, 2H), 5.98 (s, 1H), 5.84 (dd, J=6.6, 2.1 Hz, 1H), 4.03 (t, J=8.1 Hz, 1H), 3.94-3.80 (m, 7H), 3.72 (dt, J=15.8, 11.0 Hz, 2H), 3.65-3.51 (m, 5H), 3.17-3.04 (m, 1H), 2.74 (q, J=7.6 Hz, 2H), 2.69 (d, J=2.5 Hz, 3H), 2.27 (t, J=6.9 Hz, 1H), 2.24-2.07 (m, 3H), 1.32 (t, J=7.6 Hz, 3H). LC-MS (ESI): m/z=600.2 [M+H]+ |
Yield | Reaction Conditions | Operation in experiment |
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Example 78 (S)-2-((2-cyclopropyl-7-methyl-5-(6-(tetrahydrofuran-3-carbonyl)-2,6-diazaspiro[3.3]heptan-2-yl)pyrazolo[1,5-a]pyridin-3-yl)(methyl)amino)-4-(4-fluorophenyl)thiazole-5-carbonitrile (Compound 78) The title compound was prepared by the method substantially similar to that mentioned in Step 3 (Example 77), using <strong>[168395-26-4](S)-tetrahydrofuran-3-carboxylic acid</strong> afford Compound 78 as a white solid. 1H NMR (400 MHz, CDCl3) δ 8.20-8.11 (m, 2H), 7.19-7.11 (m, 2H), 5.94 (d, 1H), 5.83 (d, 1H), 4.34 (q, 2H), 4.23-4.13 (m, 2H), 4.13-4.02 (m, 4H), 3.98 (t, 1H), 3.93-3.77 (m, 3H), 3.61 (s, 3H), 2.97-2.86 (m, 1H), 2.63 (s, 3H), 2.16 (dt, 1H), 2.10-2.00 (m, 1H), 1.87 (m, 1H), 1.12-0.93 (m, 4H). LC-MS (ESI): m/z=598.2 [M+H]+ |
Yield | Reaction Conditions | Operation in experiment |
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With triethylamine; N-[(dimethylamino)-3-oxo-1H-1,2,3-triazolo[4,5-b]pyridin-1-yl-methylene]-N-methylmethanaminium hexafluorophosphate; | Step 3: 2-[[2-ethyl-6-fluoro-5-[2-[(3S)-tetrahydrofuran-3-carbonyl]-2,6-diazaspiro[3.3]heptan-6-yl]pyrazolo[1,5-a]pyridin-3-yl]-methyl-amino]-4-(4-fluorophenyl)thiazole-5-carbonitrile (Compound 102) To a solution of 102b (60 mg, 0.12 mmol) in DCM(10 mL) were successively added <strong>[168395-26-4](S)-tetrahydrofuran-3-carboxylic acid</strong> (21 mg, 0.18 mmol), HATU (68 mg, 0.18 mmol) and Et3N (36 mg, 0.36 mmol). The reaction mixture was stirred at room temperature for 4 h, then the mixture was diluted with water (10 mL) and extracted with DCM (10 mL*3). The combined organic layers were then washed with water (10 mL*2) and brine (5 mL*1), dried over Na2SO4, filtered, and concentrated in vacuo. The residue was was purified by flash chromatography to afford the title Compound 102 (32 mg, 45%) as a yellow solid. 1H NMR (400 MHz, CDCl3) δ 8.20 (d, J=6.5 Hz, 1H), 8.18-8.12 (m, 2H), 7.20-7.12 (m, 2H), 5.90 (d, J=8.5 Hz, 1H), 4.42-4.29 (m, 2H), 4.29-4.15 (m, 6H), 3.99 (t, J=8.2 Hz, 1H), 3.93-3.76 (m, 3H), 3.56 (s, 3H), 2.97-2.86 (m, 1H), 2.70 (q, J=7.6 Hz, 2H), 2.23-2.11 (m, 1H), 2.10-2.00 (m, 1H), 1.31 (t, J=7.6 Hz, 3H). LC-MS (ESI): m/z=590.2 [M+H]+. |
Yield | Reaction Conditions | Operation in experiment |
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With triethylamine; N-[(dimethylamino)-3-oxo-1H-1,2,3-triazolo[4,5-b]pyridin-1-yl-methylene]-N-methylmethanaminium hexafluorophosphate; | Example 117 2-((2-ethyl-5-(6-(4-hydroxytetrahydro-2H-pyran-4-carbonyl)-2,6-diazaspiro[3.3]heptan-2-yl)-2H-pyrazolo[3,4-b]pyridin-3-yl)(methyl)amino)-4-(4-fluorophenyl)thiazole-5-carbonitrile (Compound 117) To a solution of 116a (0.1 g, 0.21 mmol) in DCM(10 mL) were successively added <strong>[168395-26-4](S)-tetrahydrofuran-3-carboxylic acid</strong> (29.4 mg, 0.253 mmol), HATU (100 mg, 0.253 mmol) and Et3N (0.5 mL, 3.6 mmol). The reaction mixture was stirred at room temperature for 1 h, then the mixture was diluted with water (10 mL) and extracted with DCM (10 mL*3). The combined organic layers were then washed with water (10 mL*2) and brine (5 mL*1), dried over Na2SO4, filtered, and concentrated in vacuo. The residue was purified by flash chromatography to afford the title Compound 117 (70 mg, 60%) as a light brown solid. 1H NMR (400 MHz, CDCl3) δ 8.28 (s, 1H), 8.19-8.09 (m, 2H), 7.18 (t, J=8.7 Hz, 2H), 6.66 (s, 1H), 4.36 (dd, J=14.6, 7.3 Hz, 4H), 4.18 (d, J=30.2 Hz, 5H), 3.99 (t, J=8.2 Hz, 1H), 3.94-3.77 (m, 3H), 3.67 (s, 3H), 2.98-2.87 (m, 1H), 2.24-2.12 (m, 2H), 2.09 (d, J=5.4 Hz, 1H), 1.63 (t, J=7.3 Hz, 3H). LC-MS: m/z=573.2 [M+H]+. |
Yield | Reaction Conditions | Operation in experiment |
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Example 121 (S)-2-((2-ethyl-6-methyl-5-(6-(tetrahydrofuran-3-carbonyl)-2,6-diazaspiro[3.3]heptan-2-yl)-2H-pyrazolo[3,4-b]pyridin-3-yl)(methyl)amino)-4-(4-fluorophenyl)thiazole-5-carbonitrile (Compound 121) The title compound was prepared by the method substantially similar to that mentioned in Example 120, using <strong>[168395-26-4](S)-tetrahydrofuran-3-carboxylic acid</strong> to afford Compound 121 as a pale yellow solid. 1H NMR (400 MHz, CDCl3) δ 8.25-8.05 (m, 2H), 7.23-7.08 (m, 2H), 6.58 (s, 1H), 4.44-4.24 (m, 4H), 4.24-4.12 (m, 2H), 4.08-3.94 (m, 4H), 3.95-3.76 (m, 3H), 3.66 (s, 3H), 2.93 (dt, 1H), 2.59 (s, 3H), 2.22-1.96 (m, 3H), 1.60 (t, 3H). LC-MS (ESI): m/z=587.3 [M+H]+ |
Yield | Reaction Conditions | Operation in experiment |
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With triethylamine; N-[(dimethylamino)-3-oxo-1H-1,2,3-triazolo[4,5-b]pyridin-1-yl-methylene]-N-methylmethanaminium hexafluorophosphate; | Example 39 (S)-2-((2-ethyl-7-methyl-5-(6-(tetrahydrofuran-3-carbonyl)-2,6-diazaspiro[3.3]heptan-2-yl)pyrazolo[1,5-a]pyridin-3-yl)(methyl)amino)-4-(4-fluorophenyl)thiazole-5-carbonitrile (Compound 39) To a solution of 28e (70 mg, 0.14 mmol) in dichloromethane (5 mL) was added HATU (65 mg, 0.17 mmol), triethylamine (58 mg, 0.57 mmol) and <strong>[168395-26-4](S)-tetrahydrofuran-3-carboxylic acid</strong> (25 mg, 0.21 mmol). The reaction mixture was stirred at room temperature for 3 h and then the reaction mixture was quenched with water, extracted with ethyl acetate, the organic layer was washed with water (3*15 mL) and then dried over magnesium sulfate, filtered, and concentrated in vacuo. The residue was purified by column chromatography on silica gel to give the title Compound 39 (37 mg, 44%). |
Yield | Reaction Conditions | Operation in experiment |
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With triethylamine; N-[(dimethylamino)-3-oxo-1H-1,2,3-triazolo[4,5-b]pyridin-1-yl-methylene]-N-methylmethanaminium hexafluorophosphate; | Example 40 (R)-2-((2-ethyl-7-methyl-5-(6-(tetrahydrofuran-3-carbonyl)-2,6-diazaspiro[3.3]heptan-2-yl)pyrazolo[1,5-a]pyridin-3-yl)(methyl)amino)-4-(4-fluorophenyl)thiazole-5-carbonitrile (Compound 40) To a solution of 28e (70 mg, 0.14 mmol) in dichloromethane (5 mL) was added HATU (65 mg, 0.17 mmol), triethylamine (58 mg, 0.57 mmol) and <strong>[168395-26-4](S)-tetrahydrofuran-3-carboxylic acid</strong> (25 mg, 0.21 mmol). The reaction mixture was stirred at room temperature for 3 h and then the reaction mixture was quenched with water, extracted with ethyl acetate, the organic layer was washed with water (3*15 mL) and then dried over magnesium sulfate, filtered, and concentrated in vacuo. The residue was purified by column chromatography on silica gel to give the title Compound 40 (32 mg, 38%). |
Yield | Reaction Conditions | Operation in experiment |
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With triethylamine; N-[(dimethylamino)-3-oxo-1H-1,2,3-triazolo[4,5-b]pyridin-1-yl-methylene]-N-methylmethanaminium hexafluorophosphate; | Step 3: (3S)-N-(3-(3-((5-cyano-4-(4-fluorophenyl)thiazol-2-yl)(methyl)amino)-2-ethyl-7-methylpyrazolo[1,5-a]pyridin-5-yl)-3-azabicyclo[3.1.0]hexan-6-yl)tetrahydrofuran-3-carboxamide (Compound 64) To a solution of 64b (54 mg, 0.11 mmol) in DCM (10 mL) were successively added <strong>[168395-26-4](S)-tetrahydrofuran-3-carboxylic acid</strong> (15 mg, 0.13 mmol), HATU (65 mg, 0.17 mmol) and TEA (33 mg, 0.33 mmol). The reaction mixture was stirred at room temperature for 4 h, then the mixture was diluted with water (10 mL) and extracted with DCM (10 mL*3). The combined organic layers were then washed with water (10 mL*2) and brine (5 mL*1), dried over sodium sulfate, filtered, and concentrated in vacuo. The residue was purified by flash chromatography to afford the title compound 64 (50 mg, 72%) as a light brown solid. LC-MS (ESI): m/z=586.2 [M+H]+ |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
20.5% | [0196] To a stirred solution of <strong>[168395-26-4](S)-tetrahydrofuran-3-carboxylic acid</strong> (91-1, 0.10 g, 0.83 mmol) in DMF (5 mL) at 0oC was added DIPEA (0.27 g, 2.06 mmol) followed by HATU (0.39 g, 1.03 mmol) and the reaction mixture was stirred at RT for 15 min. To the resulting reaction mixture compound 4-3 (0.15 g, 0.69 mmol) was added and the reaction mixture was stirred at RT for 16 h. The progress of the reaction was monitored by TLC. After completion of the reaction the reaction mixture was diluted with water. The aqueous layer was extracted with ethyl acetate. The organic layer was washed with saturated NaHCO3 solution and brine, dried over anhydrous Na2SO4 and concentrated under reduced pressure. The crude compound was purified by silica gel column chromatography (50% EtOAc/hexane) to afford 91 (0.045 g, 20.5%) as light brown solid. 1H NMR (400 MHz, DMSO-d6) δ 12.64 (s, 1H), 8.10-8.17 (m, 1H), 7.85-7.97 (m, 3H), 7.50-7.58 (m, 1H), 3.92-4.01 (m, 1H), 3.78-3.87 (m, 2H), 3.69-3.78 (m, 1H), 3.35-3.43 (m, 1H), 2.10-2.22 (m, 2H); LC-MS: m/z 317.05 [M+H]+; HPLC: 96.87%; C-HPLC: 95.80% (RT: 6.26); SOR: 12.03, Solvent: DMSO, Path length: 100 mm, Concentration: 0.25 w/v%. |