Structure of 25999-04-6
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 25999-04-6 |
Formula : | C4H10N2O3S |
M.W : | 166.20 |
SMILES Code : | O=S(N1CCOCC1)(N)=O |
MDL No. : | MFCD11171673 |
InChI Key : | WZWQJRQCWCFUTM-UHFFFAOYSA-N |
Pubchem ID : | 276739 |
GHS Pictogram: |
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Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 10 |
Num. arom. heavy atoms | 0 |
Fraction Csp3 | 1.0 |
Num. rotatable bonds | 1 |
Num. H-bond acceptors | 5.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 38.8 |
TPSA ? Topological Polar Surface Area: Calculated from |
81.01 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
0.87 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
-1.53 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
-0.78 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
-1.36 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
-1.3 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
-0.82 |
Log S (ESOL):? ESOL: Topological method implemented from |
0.16 |
Solubility | 240.0 mg/ml ; 1.44 mol/l |
Class? Solubility class: Log S scale |
Highly soluble |
Log S (Ali)? Ali: Topological method implemented from |
0.34 |
Solubility | 360.0 mg/ml ; 2.16 mol/l |
Class? Solubility class: Log S scale |
Highly soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
0.38 |
Solubility | 394.0 mg/ml ; 2.37 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-8.4 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
2.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.46 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
17% | With SULFAMIDE; In 1,2-dimethoxyethane; at 100℃; | Step 1 : morpholine-4-sulfonamide; To a solution of morpholine (leq) in DME (0.3 M), 5 eq of sulfamide were added and the solution was heated at 100 0C overnight. The volatiles were removed in vacuo, the residue taken up in EtOAc and the organic phase washed with H2O and then brine. The organic phase was dried over Na2SO4, filtered and concentrated in vacuo to give the title compound (17 %); MS (ES+) m/z 167 (M+H)+ |
With SULFAMIDE; In monoethylene glycol diethyl ether; at 120℃; for 11h; | 5.00 g of sulfamide, 4.09 g of morpholine and 5 ml of 1,2-diethoxyethane were mixed and heated with stirring in an oil bath at 120C for 11 hours.. The reaction solution was air-cooled to room temperature and the crystal was washed with diethyl ether, washed with methanol and then dried under reduced pressure to obtain 5.98 g of the desired compound as an brownish crystal having a melting point of 158 to 161C. | |
With SULFAMIDE; In 1,4-dioxane; for 48h;Heating / reflux; | Morpholine [(5ML)] and sulfamide [(1] [LG)] in 1,4-dioxane [(100ML)] were heated at reflux for 48h. The solvent was evaporated under reduced pressure and the resulting solid partitioned between EtOAc and water. The organic phase was collected and the aqueous phase was further extracted with EtOAc (x4). The combined organic extracts were dried [(MGS04)] and the solvent removed in vacuo. The solid residue was triturated with Et20 and filtered to give the subtitle compound as a white crystaline solid. Yield: 2. [1 G.] 'H [NMR A (DMSO)] 6.82 (2H, s), 3.66 (4H, [M),] 2.90 (4H, [M).] |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
97% | With palladium on activated charcoal; hydrogen; In methanol; for 3h; | General procedure: To a solution of the compound of Reference Example 53-2 (540 mg, 1.423 mmol) in methanol (20 mL), palladium-carbon (760 mg) was added, and the mixture was stirred for 3 hours under hydrogen atmosphere. The reaction solution was filtered through Celite, and the filtrate was concentrated under reduced pressure to obtain the title compound (411 mg, 100%). 1H NMR (DMSO-d6, 300 MHz) delta 6.87 (m, 1H), 4.48-4.37 (m, 1H), 4.32-4.21 (m, 1H), 3.45-3.34 (m, 1H), 2.11-2.03 (m, 1H), 1.89-1.86 (m, 2H), 1.71-1.67 (m, 2H), 1.37-1.30 (m, 10H), 1.23-1.17 (m, 2H), 1.13-0.95 (m, 2H). |
In 1,4-dioxane; at 110℃; for 16h; | General procedure: N-Ethyl-N-methyl amine (2.95 g, 50 mmol) was added to a solution of Sulfamide (4 g, 41.6 mmol) in 1,4-Dioxane (40 mL) and continued stirring at 110C for 16 h. Reaction mass was concentrated under reduced pressure to afford the crude, which was purified by column purification (using neutral alumina and 10-70% ethyl acetate in Hexane as eluent) to afford N-Ethyl-N-methyl sulfamide (Int-30) as pale yellow oil. 1H NMR (300 MHz, DMSO-d6) delta ppm 6.7 (2H, s), 3.1-2.3 (2H, m), 2.6 (3H, s), 1.2-1.0 (3H, t). | |
With SULFAMIDE; In 1,4-dioxane; at 110℃; for 16h; | General procedure: N-Ethyl-N-methyl amine (2.95 g, 50 mmol) was added to a solution of Sulfamide (4 g, 41.6 mmol) in 1,4-Dioxane (40 mL) and continued stirring at 110 C. for 16 h. Reaction mass was concentrated under reduced pressure to afford the crude, which was purified by column purification (using neutral alumina and 10-70% ethyl acetate in Hexane as eluent) to afford N-Ethyl-N-methyl sulfamide (Int-30) as pale yellow oil. 1H NMR (300 MHz, DMSO-d6) delta ppm 6.7 (2H, s), 3.1-2.3 (2H, m), 2.6 (3H, s), 1.2-1.0 (3H, t). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With trifluoroacetic acid; In dichloromethane; at 20℃; for 5h; | Dissolved A-1 (2.16 g, 13 mmol) in TFA (2 mL) and CH2Cl2 (2 mL) and stirred the mixture at r.t. for 5 h. Removed the solvents in vacuo to afford B-1 as a beige solid (1.35 g, 100%). 1H NMR (400 MHz, CHLOROFORM-D) delta ppm 3.10-3.39 (m, 4 H) 3.63-3.96 (m, 4 H). |
80.2% | With trifluoroacetic acid; In dichloromethane; for 4h; | Step 2:; Compound 2a2 (0.150 g, 0.56 mmol) was dissolved in CH2CI2 (5 mL) andtreated with TFA (1 mL). The reaction was stirred for 4h and monitored by TLC. Uponcompletion, the solvent was evaporated and the residue directly adsorbed on thesilica gel and eluted with 5% MeOH in CHCI3 to afford 0.075g (80.2%) of compound2a3 as a white solid. |
80.2% | With trifluoroacetic acid; In dichloromethane; for 4h; | Compound 2a2 (0.150 g, 0.56 mmol) was dissolved in CH2Cl2 (5 mL) and treated with TFA (1 mL). The reaction was stirred for 4 h and monitored by TLC. Upon completion, the solvent was evaporated and the residue directly adsorbed on the silica gel and eluted with 5% MeOH in CHCl3 to afford 0.075 g (80.2%) of compound 2a3 as a white solid. |
80.2% | With trifluoroacetic acid; In dichloromethane; for 4h; | Compound 3a2 (0.150 g, 0.56 mmol) was dissolved in CH2CI2 (5 mL) andtreated with TFA (1 mL). The reaction was stirred for 4h and monitored by TLC. Uponcompletion, the solvent was evaporated and the residue directly adsorbed on thesilica gel and eluted with 5% MeOH in CHCI3 to afford 0.075g (80.2%) of compound3a3 as a white solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With caesium carbonate;tris-(dibenzylideneacetone)dipalladium(0); XPhos; In 1,4-dioxane; at 100℃; for 0.333333h;Microwave irradiation; | i)^V-[2-[[(2,3-Difluorophenyl)methyl]thio]-6-[(l/?)-l-[(4/Z)-2,2-dimethyl-l,3-dioxolan-4-yl] ethoxy ] -4-pyrimidinyl] -1 -morpholinesulfonamide; A mixture of <strong>[25999-04-6]morpholine-4-sulfonamide</strong> (prepared according to patent WO 2004/011443,0.239g), tris(dibenzylideneacetone)-dipalladium (0) (33mg), 2-dicyclohexylphosphino-2',4',6'-tri-isopropyl-l,l'-biphenyl (XPHOS) (17mg), cesium carbonate (0.176g) and 4-chloro-2-[(2,3-difluorobenzyl)thio]-6- {(I/?)- l-[(4/?)-2,2-dimethyl-1,3-dioxolan-4-yl]ethoxy}pyrimidine (the product of example 45 step vii) (0.150g) in anhydrous dioxane(6ml) was heated at reflux in a microwave at 100C, 300W, open vessel with cooling for 20min. Saturated aqueous ammonium chloride was added and the resulting mixture extractedwith EtOAc. The combined organic extracts were washed with saturated aqueous sodiumchloride, dried with sodium sulfate, filtered and evaporated. The residue was purified bycolumn chromatography on silica using a 1:19 to 2:3 mixture of EtOAc and iso-hexane aseluent to give the subtitle compound as a yellow gum. Yield: 0.165gMS: APCI(+ve) 547 [M+H+] |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With caesium carbonate;tris-(dibenzylideneacetone)dipalladium(0); XPhos; In 1,4-dioxane; at 100℃; for 18h; | Example 59 ;A^-[2-[(2,3-Difluorobenzyl)thio]-6-(methylthio)pyrimidin-4-yl]<strong>[25999-04-6]morpholine-4-sulfonamide</strong> ;A mixture of 4-moipholinesulfonamide (prepared according to patent WO 2004/011443,0.39g), tris(dibenzylideneacetone)-dipalladium(0) (33mg), 2-dicyclohexylphosphino-2',4',6'-tri-/ropropyl-l,l'-biphenyl (XPHOS) (17mg), cesium carbonate (0.58g) and 4-chloro-2-[(2,3-drfluorobenzyl)thio]-6-(methylthio)pyrunidine (the product of example 57, step i) (0.38g) indioxane (lOmL) was heated at 100C for 18h. The mixture was cooled and saturatedarnmonium chloride was added and the resulting mixture extracted with EtOAc. Thecombined organic extracts were washed with saturated aqueous sodium chloride, dried(MgSO4), filtered and evaporated. The residue was purified by reverse phase HPLC elutingwith acetonitrile / aq. 0.1% ammonium acetate mixtures to give the title compound as a whitesolid. Yield: 30mg.MS: APCI(+ve) 449 [M+H+]1R NMR (CDC13) 8 2.51 (3H, s), 3.30 (4H, t), 3.72 (4H, t), 4.43 (2H, s), 6.73 (1H, s), 7.00-7.10 (2H, m), 7.21-7.24 (1H, m) |