Structure of 2991-28-8
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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| CAS No. : | 2991-28-8 |
| Formula : | C7H4F2O2 |
| M.W : | 158.10 |
| SMILES Code : | O=C(O)C1=CC(F)=CC=C1F |
| MDL No. : | MFCD00002410 |
| InChI Key : | LBQMIAVIGLLBGW-UHFFFAOYSA-N |
| Pubchem ID : | 76339 |
| GHS Pictogram: |
|
| Signal Word: | Warning |
| Hazard Statements: | H315-H319-H335 |
| Precautionary Statements: | P261-P305+P351+P338 |
| Num. heavy atoms | 11 |
| Num. arom. heavy atoms | 6 |
| Fraction Csp3 | 0.0 |
| Num. rotatable bonds | 1 |
| Num. H-bond acceptors | 4.0 |
| Num. H-bond donors | 1.0 |
| Molar Refractivity | 33.32 |
| TPSA ? Topological Polar Surface Area: Calculated from |
37.3 Ų |
| Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.22 |
| Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
2.07 |
| Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
2.5 |
| Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
2.47 |
| Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.06 |
| Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
2.06 |
| Log S (ESOL):? ESOL: Topological method implemented from |
-2.46 |
| Solubility | 0.546 mg/ml ; 0.00345 mol/l |
| Class? Solubility class: Log S scale |
Soluble |
| Log S (Ali)? Ali: Topological method implemented from |
-2.48 |
| Solubility | 0.52 mg/ml ; 0.00329 mol/l |
| Class? Solubility class: Log S scale |
Soluble |
| Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.32 |
| Solubility | 0.764 mg/ml ; 0.00483 mol/l |
| Class? Solubility class: Log S scale |
Soluble |
| GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
| BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
| P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
| CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
| CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
| CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
| CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
| CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
| Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-5.79 cm/s |
| Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
| Ghose? Ghose filter: implemented from |
None |
| Veber? Veber (GSK) filter: implemented from |
0.0 |
| Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
| Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
| Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.56 |
| PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
| Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
| Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
| Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.15 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| With thionyl chloride; for 3h;Reflux; | General procedure: A mixture of <strong>[2991-28-8]2,5-difluorobenzoic acid</strong> (1.58 g, 10 mmol) and thionyl chloride (7 mL) was refluxed for 3 h. The excess thionyl chloride was removed by distillation under reduced pressure to give an oil residue | |
| With thionyl chloride; In dichloromethane; toluene; for 5h;Reflux; | General procedure: Benzoic acid (1 mmol) was reacted with a solution of thionyl chloride in CH2Cl2 (1 M, 6 mL) in refluxing toluene (3 mL) for 5 h. After cooling to room temperature, the solvent was evaporated under reduced pressure. The obtained benzoyl chloride was dissolved in dry CH2Cl2 (5 mL), and the resultant solution was cooled to 0 C. To this solution, TEA (4.4 mmol, 0.444 g), 1-(9H-fluoren-9-yl)-piperazine (3) (1.1 mmol, 0.275 g) or 1-(diphenylmethyl)-piperazine (9) (1.1 mmol, 0.277 g) in dry CH2Cl2 (5 mL) was added dropwise. After the addition, the reaction mixture was stirred for 16 h at room temperature. Subsequently, the solution was washed with aqueous HCl (10%, v/v, 3 x 15 mL), a saturated NaHCO3 solution (1 x 15 mL), and aqueous NaCl (5%, w/v, 1 x 15 mL). Finally, the organic layer was dried over anhydrous magnesium sulfate. The mixture was filtered, and the solvent was evaporated under reduce pressure. When necessary, the products were purified using silica gel chromatography with CH2Cl2/methanol (20:5, v/v) as the mobile phase. This protocol was used for the synthesis of 9H-fluoren-9-yl-piperazines 2, 4a, 4c-e, 4h-i and 1-(diphenylmethyl)-piperazines 10a-b and 10d-e. The crystal used for the data collection was obtained by recrystallization of compound 4d from hexane followed by slow evaporation at room temperature. | |
| With thionyl chloride;Reflux; | General procedure: The corresponding acid compound 5 (10 mmol) was completely dissolved in 30 mL of SOCl2. The reaction was stirred at reflux temperature for 12 h. The mixture was evaporated under vacuum, the residue was dissolved in 10 mL of dry DCM and used in next step without purification. |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 31.3% | With sulfuric acid; nitric acid; at 0 - 20℃; for 1h; | [00205] Step A: <strong>[2991-28-8]2,5-Difluorobenzoic acid</strong> (2.01 g, 9.90 mmol, 31.3percent yield) was dissolved in concentrated sulfuric acid (25 mL) and cooled to 00C. Nitric Acid (1.46 mL, 34.8 mmol) was added, and the reaction mixture was stirred at room temperature for one hour. The solution was extracted with DCM (3 X), and the combined organic layers were dried over sodium sulfate and concentrated. The residue was purified by column chromatography (1:1 hexanes:lpercentHCOOH/EtOAc) giving 2,5-difluoro-3-nitrobenzoic acid (2.01 g, 31.3percent) as a solid. |
| 31.3% | With sulfuric acid; nitric acid; In water; at 0 - 20℃; | <strong>[2991-28-8]2,5-Difluorobenzoic acid</strong> (2.01 g, 9.90 mmol, 31.3percent yield) was dissolved in concentrated sulfuric acid (25 mL) and cooled to 0°C. Nitric Acid (1.46 mL, 34.8 mmol) was added, and the reaction mixture was stirred at room temperature for one hour. The solution was extracted with DCM (3 X), and the combined organic layers were dried over sodium sulfate and concentrated. The residue was purified by column chromatography (1:1 hexanes:lpercentHCOOH/EtOAc) giving 2,5-difluoro-3-nitrobenzoic acid (2.01 g, 31.3percent) as a solid. |
| 31.3% | With sulfuric acid; nitric acid; at 0 - 20℃; | Step A: <strong>[2991-28-8]2,5-Difluorobenzoic acid</strong> (2.01 g, 9.90 mmol, 31.3percent yield) was dissolved in concentrated sulfuric acid (25 mL) and cooled to 0°C. Nitric Acid (1.46 mL, 34.8 mmol) was added, and the reaction mixture was stirred at room temperature for one hour. The solution was extracted with DCM (3 X), and the combined organic layers were dried over sodium sulfate and concentrated. The residue was purified by column chromatography (1:1 hexanes:lpercentHCOOH/EtOAc) giving 2,5-difluoro-3-nitrobenzoic acid (2.01 g, 31.3percent) as a solid. |
| 31.3% | With sulfuric acid; nitric acid; at 0 - 20℃; | <strong>[2991-28-8]2,5-Difluorobenzoic acid</strong> (2.01 g, 9.90 mmol, 31.3percent yield) was dissolved in concentrated sulfuric acid (25 mL) and cooled to 0°C. Nitric Acid (1.46 mL, 34.8 mmol) was added, and the reaction mixture was stirred at room temperature for one hour. The solution was extracted with DCM (3 X), and the combined organic layers were dried over sodium sulfate and concentrated. The residue was purified by column chromatography (1:1 hexanes:lpercentHCOOH/EtOAc) giving 2,5-difluoro-3-nitrobenzoic acid (2.01 g, 31.3percent) as a solid. |

[ 2991-28-8 ]
[ 2991-28-8 ]
[ 2991-28-8 ]
[ 2991-28-8 ]
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 93% | With sec-BuLi; In tetrahydrofuran; hydrogenchloride; N,N-dimethyl-formamide; | a. 4,7-Difluoro-3-hydroxy-1(3H)-isobenzofuranone. To a -78° C. solution of the oxazoline derivative (7.95 g, 37.7 mmol), prepared from <strong>[2991-28-8]2,5-difluorobenzoic acid</strong> in the usual manner, in THF (50 mL) was added over 15 min sec-BuLi (29 mL of 1.3 M solution). After 30 min, DMF (6.0 mL) was added, and the reaction was stirred at -78° C. for 2 hr. The reaction was then quenched with concentrated HCl (5 mL). The solvents were removed in vacuo, and the residue was taken up in 5 N HCl (5 mL) and heated on the steam bath overnight. After cooling to room temperature, the reaction mixture was extracted with EtOAc (3*200 mL). Standard workup gave a light brown solid (6.5 g, 93percent, mp 125°-128° C.). |
| 93% | With sec-BuLi; In tetrahydrofuran; hydrogenchloride; N,N-dimethyl-formamide; | a. 4,7-Difluoro-3-hydroxy-1(3H)-isobenzofuranone To a -78° C. solution of the oxazoline derivative (7.95 g, 37.7 mmol), prepared from <strong>[2991-28-8]2,5-difluorobenzoic acid</strong> in the usual manner, in THF (50 mL) was added over 15 min sec-BuLi (29 mL of 1.3 M solution). After 30 min, DMF (6.0 mL) was added, and the reaction was stirred at -78° C. for 2 hr. The reaction was tnen quenched with concentrated HCl (5 mL). Tne solvents were removed in vacuo, and the residue was taken up in 5 N HCl (5 mL) and heated on the steam bath overnight. After cooling to room temperature, the reaction mixture was extracted with EtOAc (3*200 mL). Standard workup gave a light brown solid (6.5 g, 93percent, mp 125°-128° C.). |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 1H-NMR(CDCl3,delta):1.47(3H,t,J=7.3 Hz),1.53(3H,t,J=6.9 Hz), 4.55(2H,q,J=7.3 Hz),4.67(2H,q,J=6.9 Hz),5.26(2H,s), 6.63-6.69(1H,m),6.97-7.06(2H,m),7.26(1H,d,J=2.0 Hz), 7.71(1H,d,J=1.0 Hz),7.90-8.10(1H,br),8.16(1H,s),8.45(1H,s). |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| With sulfuric acid; nitric acid; at 0℃; for 2h; | To a solution of 2, 5-difluoro-benzoic acid (3.66 g, 23 mmol) in concentrated sulfuric acid (10 mL) was added a mixture of 3 mL of nitric acid (90percent, fuming) and 3 mL of concentrated sulfuric acid dropwise at 0 °C. The reaction mixture was stirred at 0 C for 2 hours. The resulting mixture was then poured onto ice and extracted with ethyl acetate (3 X 30 mL). After removal of the solvent, the residue was purified by chromatography using 5percent of methanol in chloroform as eluent. A mixture of 2,5-difluoro-3-nitro-benzoic acid and 3,6- DIFLUORO-2-NITRO-BENZOIC acid was obtained. Yield 2.48 G. LH NMR (400 MHZ, CDC13) : 2, 5-difluoro-3-nitro-benzoic acid: 8 8.36 (ddd, 1H), 8.07 (ddd, 1H). |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| With N-ethyl-N,N-diisopropylamine; HATU; In DMF (N,N-dimethyl-formamide); for 16h; | To a solution of the appropriate acid component (0.5 mmol) in DMF (1 ml) was added sequentially a solution of HATU (209 mgs) in DMF (1 ml), PS-DIEA (273mgs of 3.66 mmol/g) and a sonicated solution of (RS) 3- (4-fluorobenzoyl) pyrrolidine hydrochloride (prepared according to J Med. Chem. , 13 (1), 1-6, (1970); 139 mgs, 0. 57mmol) and diisopropylethylamine (DIEA) (50.5 mgs, 0. 07ml, 0.5 mmol) in DMF (1-2 ml), and the reaction mixture was aged for approximately 16 hours. The products were purified by purification technique (a), (b) or (c) described below: a) The reaction mixture was poured onto an Isolute SCX-2 column (1 g, 0. 4mmol/g) aligned over an Isolute-NH2 column (1 g, 0. 6mmol/g) transferring with DCM (0. 5ml). The columns were then eluted under atmospheric pressure with DCM. The bulk of the solvent was removed using a Genevac HT4 and then if necessary purified using the Isco CombiFlash Optix-10 parallel flash chromatography Optics-10 system (12g silica column, Gradient of isohexane/EtOAc, Flow rate 30 ml/min). b) The bulk of the solvent was removed using a Genevac HT4 and then purified using the Isco CombiFlash Optix-10 parallel flash chromatography system Optics-10 system (12g silica column, Gradient of isohexane/EtOAc, Flow rate 30 ml/min). c) Preparative LC-MS. Conditions: Column: 19x50mm Xterra CIS 5Rm with guard Time (mins) Apercent Bpercent 0 95 5 1. 02 95 5 6. 50 0 100 6. 60 0 100 8*5 100 9 95 5 A: water containing 1percent ammonia B: MeCN far UV grade It will be appreciated that various orders of addition, and various purification methods, or combinations of methods, can be employed to prepare the compounds exemplified below, and their congeners |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| With 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride;dmap; In tetrahydrofuran; N,N-dimethyl-formamide; at 20℃; for 3h; | To a solution of 5.Og (31.6 mmol) of <strong>[2991-28-8]2,5-difluorobenzoic acid</strong> (1-1) in 2OmL of 1: 1 THF/DMF was added 4.39g (33.2 mmol) of t-butylcarbazate, 6.67g (34.8 mmol) of EDCI, and 50 mg of DMAP. After stirring for 3h at room temperature, the reaction was dumped into ice water and extracted three times with ether. The combined organic phases were washed two times with 10percent citric acid, two times with saturated NaHCO3, once with water, once with brine, and then dried over MgSO4. Concentration by rotary evaporation provided the BOC-protected acyl hydrazine as a white solid. To a solution of 1.5g (5.5 mmol) of this material in 20 mL of CH2Cl2, cooled to 00C, was added 10 mL of trifluoroacetic acid, and the resultant mixture was allowed to stir for 2 h at that temperature. The volatiles were removed by rotary evaporation, the residue was partitioned between EtOAc and aqueous NaHCO3, the layers were separated, and the aqueous phase was extracted two more times with EtOAc. The combined organic phases were washed twice with saturated NaHCO3, brine, dried over Na2SO4, and concentrated to provide 663mg (3.85 mmol) of 2,5-difluorobenzohydrazide (1-2) as a white solid. This material was dissolved in 30 mL of EtOH, and then 1.5 mL of HOAc was added, followed by 390 muL (3.85 mmol) of benzaldehyde. After stirring for Ih at room temperature, the solvents were removed by rotary evaporation, and the residue was triturated with Et2O to provide the imine as a white powder. A portion of this imine (225mg, 0.86 mmol) was dissolved in 3 mL of acetic anhydride and heated at 125 0C for 2h After cooling to room temperature, the volatiles were removed by rotary evaporation, the residue was dissolve in EtOAc, washed twice with saturated NaHCO3, water, dried over Na2SO4, and concentrated. The residue was then purified by column chromatography with a gradient of EtOAc in hexanes to provide (1-3) as a white solid. IH NMR (500 MHz, CDC13): delta 7.6 -7.4 (m, 6H), 7.2 (m, 2H), 7.1 (s, IH), 2.4 (s, 3H) ppm. HRMS (ES) calc'd M + H for C16H12F2N2O2: 303.0940; found 303.0926. | |
| With 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride;dmap; In tetrahydrofuran; N,N-dimethyl-formamide; for 16h; | Step B: Preparation of <strong>[2991-28-8]2,5-difluorobenzoic acid</strong> hydrazide: To a solution of<strong>[2991-28-8]2,5-difluorobenzoic acid</strong> (3.5 g, 22 mmol) in THF/DMF (20 mL/20 mL) was added EDCI (4.7 g, 24 mmol), DMAP (50 mg) and NH2NHBoC (3.07 g, 23.2 mmol). After stirring for 16 hours, the reaction was quenched with water (30 mL) and diluted with EtOAc (30 mL). The organic layer was then washed with HCl (0.5 M, 20 mL), saturated NaHCO3 (20 mL), and brine (20 mL). The organic layer was then dried over Na2SO4, filtered and concentrated under reduced pressure to afford the crude Boc-protected product, which was then dissolved in DCM (60 mL) at 0 °C. TFA (50 mL) was added to the above DCM solution. After stirring for 2 hours, the reaction mixture was concentrated and the residue was dissolved in DCM (60 mL). The solution was washed with saturated NaHCO3 (40 mL) and dried over Na2SO4, filtered and concentrated under reduced pressure to afford the desired crude product. |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| Step A 2,5-Difluoro-N-isopropyl-benzamide The title compound was prepared from <strong>[2991-28-8]2,5-difluorobenzoic acid</strong> (10 g, 63.2 mmol), carbonyidiimidazole (9.57 g, 61 mmol) and isopropyl amine (5.15 mL, 60.5 mmol) according to the procedure used for example 84 (Step A) to give near quantitative yield of the title compound. NMR (DMSO-d6, 400 MHz): delta 1.12-1.13 (d, 6H), 3.99-4.04 (m, 1H), 7.31-7.36 (m, 3H), 8.24-8.26 (broad s, 1H). MS (ESI+, m/z): 200 [M+H]+. |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 91% | Example 25 N-t-Butyl-2,5-difluorobenzamide The title compound (0.3921 g; 91percent) was prepared by the same method as that described in Example 14, using <strong>[2991-28-8]2,5-difluorobenzoic acid</strong> (0.3173 g, 2.01 mmol). 1H-NMR (270 MHz, CDCl3) 7.78-7.71 (m, 1H), 7.14-7.03 (m, 2H), 6.60 (br, 1H), 1.47 (s, 9H) |

[ 2991-28-8 ]
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| In (1-methyl-1,2,3,4-tetrahydrobenzo[e][1,4]diazepin-5-ylidenemethyl)phosphonic acid diethyl ester; | The starting material was prepared as follows: (7-fluoro-1-methyl-1,2,3,4-tetrahydrobenzo[e][1,4]diazepin-5-ylidenemethyl)phosphonic acid diethyl ester was prepared in an analogous fashion to (1-methyl-1,2,3,4-tetrahydrobenzo[e][1,4]diazepin-5-ylidenemethyl)phosphonic acid diethyl ester, prepared in Example 1, by replacing 2-fluorobenzoic acid with <strong>[2991-28-8]2,5-difluorobenzoic acid</strong>. |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| EXAMPLE 265 Preparation of 1-N-(N-2,5-difluoro-benzoyl-leucinyl)-amino-3-N-(8-quinoline-sulfonyl)-amino-propan-2-one Following the procedure of Example 250(a)-(c), except substituting "<strong>[2991-28-8]2,5-difluoro-benzoic acid</strong>" for "4-pyridyl acetic acid" and "8-quinoline sulfonic acid" for "2-benzyloxy phenyl sulphonyl chloride" the title compound was prepared: MS(ES) M+H+ =535. |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 21% | With hydrogenchloride; PPA; aniline; In water; | a. 4'-Amino-2,5-difluorobenzophenone To stirred 90° C. polyphosphoric acid (125 g) was added <strong>[2991-28-8]2,5-difluoro-benzoic acid</strong> (10.0 g, 6.32 mmol) and aniline (5.87 g 6.3 mmol) and the bath temperature raised to 180°-190° C. and held there for 1 hour. The heating bath was removed and the stirred mixture (sublimate above the solution) was treated cautiously with 50 mL of water. The mixture was stirred at 140°-155° C. for 1 hour, the heating bath removed, 45 mL of 3N HCl added, the mixture poured into 650 mL of water and filtered through a pad of Celite. The filtrate was basified with 15percent sodium hydroxide and the mixture filtered through a pad of Celite. The Celite pad was washed well with methylene chloride, the methylene chloride dried (MgSO4), filtered and the solvent removed in vacuo. Purification by flash column chromatography (methylene chloride) followed by recrystallization twice from 50percent ethanol (80 mL) yielded the aniline as a yellow solid (3.08 g, 21percent); mp 101°-103° C. 1 H--NMR (300 MHz, CDCl3): 4.27 (s, 2H, NH2) 6.63-6.67 (m, 2H, aromatic) 7.09-7.19 (m, 3H, aromatic) 7.68-7.71 (m, 2H, aromatic). MS (CI, CH4): 234 (M+1). Analysis for C13 H9 F2 NO: Calculated: C, 66.95; H, 3.89; N, 6.01. Found: C, 66.86; H, 4.04; N, 5.95. |

A274352 [103877-80-1]
2,5-Difluoro-4-methylbenzoic acid
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A274352 [103877-80-1]
2,5-Difluoro-4-methylbenzoic acid
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A274352 [103877-80-1]
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