Structure of 307313-03-7
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 307313-03-7 |
Formula : | C8H10N2O2 |
M.W : | 166.18 |
SMILES Code : | OC(=O)C1=NN2CCCCC2=C1 |
MDL No. : | MFCD09056814 |
InChI Key : | GWQKXBKREDPLAS-UHFFFAOYSA-N |
Pubchem ID : | 21941460 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H332-H335 |
Precautionary Statements: | P261-P280-P305+P351+P338 |
Num. heavy atoms | 12 |
Num. arom. heavy atoms | 5 |
Fraction Csp3 | 0.5 |
Num. rotatable bonds | 1 |
Num. H-bond acceptors | 3.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 42.91 |
TPSA ? Topological Polar Surface Area: Calculated from |
55.12 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.05 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
0.81 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
0.92 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.67 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
0.68 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
0.82 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.62 |
Solubility | 3.96 mg/ml ; 0.0238 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.55 |
Solubility | 4.69 mg/ml ; 0.0282 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-0.89 |
Solubility | 21.7 mg/ml ; 0.13 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.74 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.56 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.2 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
4.6 g | With sulfuric acid; nitric acid; at 50 - 60℃; for 6h; | (ii) Fuming nitric acid (5 mL) was added to concentrated sulphuric acid (30 mL) with ice cooling. The resulting mixture was warmed to 40 C and the intermediate acid (5.0 g) was added portionwise over 1 h so as to keep the internal temperature between 50 and 60 C. The reaction was stirred at 60 C for 1 h followed by 4 h at 50 C. The mixture was allowed to cool to room temperature and stirred overnight. The mixture was poured onto ice and the resulting precipitate filtered off, washed with water, and dried to afford the acid intermediate, 3-nitro-4,5,6,7-tetrahydropyrazolo[1,5-a] pyridine-2-carboxylic acid (4.6 g). 1H NMR (CDCl3) δ: 2.00 (m, 2H), 2.15 (m, 2H), 3.20 (t, 2H), 4.28 (t, 2H). LRMS (Thermospray) m/z: 229.3 (M+18)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
84.8% | With water; sodium hydroxide; at 0 - 20℃; for 3.5h; | Ethyl 4,5,6,7-tetrahydropyrazolo[1,5-a]pyridine-2-carboxylate (7.69 g, 39.6 mmol), H2O (60 mL)Add 250 mL round bottom flask, cool to 0 C, then add sodium hydroxide (7.90 g, 198 mmol) and continue to stir for 30 min.The reaction was further carried out for 3 h at room temperature, and the reaction of the starting material was completely confirmed by TLC.Add DCM (60 mL) to extract the liquid, and adjust the pH to 5 with concentrated hydrochloric acid.After standing, a yellow-white solid precipitated and was filtered.The yellow solid was 5.58g, and the yield was 84.8%. |
General procedure: (i) Sodium hydroxide solution (20 mL, 2 M, 40 mmol) was added to a solution of 23a (5.8 g, 30 mmol) in dioxan (100 mL), and the reaction stirred at room temperature for 18 h. The mixture was evaporated under reduced pressure and HCl (2 M, 21 mL) was added. The mixture was evaporated under reduced pressure, the residue azeotroped with toluene, and the product dried under vacuum. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Example 101N-((ls,4s)-4-(2-(3'-(((3R,5S)-3,5-dimethylpiperazin-l-yl)methyl)-4'-hydroxybiphenyl-3- yloxy)-5-fluoronicotinamido)cyclohexyl)-4,5,6,7-tetr ahy dr opyr azolo [ 1 ,5-a] pyridine-2- carboxamide EDCI (0.046 g, 0.24 mmol) was added to a solution of 4,5,6,7-tetrahydropyrazolo[l,5- a]pyridine-2-carboxylic acid (0.040 g, 0.24 mmol) and HOBt (0.037 g, 0.24 mmol) in DMF (2 mL) and stirred for 15 min. A solution of N-((ls,4s)-4-aminocyclohexyl)-2-(3'-(((3R,5S)-3,5- dimethylpiperazin-l-yl)methyl)-4'-hydroxybiphenyl-3-yloxy)-5-fluoronicotinamide (0.12 g, 0.22 mmol) and triethylamine (0.061 mL, 0.44 mmol) in DMF (2 mL) was added and the reaction stirred for a further 20 h. 7M NHs/MeOH (1 mL) added and stirred for 2 h. Acidified with 2M HCl and purified by reverse phase HPLC with aqTFA/MeCN as eluent to afford the title compound as a white solid. Yield: 143 mg1H NMR (400 MHz, DMSO) δ 8.33 (d, J = 7.2 Hz, IH), 8.25 (d, J = 3.4 Hz, IH), 8.05 (m, IH), 7.68 (m, IH), 7.58 (m, IH), 7.48 (m, 2H), 7.40 (m, IH), 7.27 (d, J = 8.1 Hz, IH), 7.14 (m, IH), 7.00 (d, J = 8.5 Hz, IH), 6.34 (s, IH), 4.18 (m, 2H), 4.01 (m, 4H), 3.84 (m, 2H), 3.62 - 3.45 (m, 5H), 2.89 - 2.76 (m, 2H), 2.74 (t, J = 7.1 Hz, 2H), 1.96 (m, 2H), 1.81 - 1.60 (m, 8H), 1.24 (d, J = 6.6 Hz, 6H). MS: APCI (+ve):696 (M+l) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With N-ethyl-N,N-diisopropylamine; HATU; In N,N-dimethyl-formamide; at 20℃; for 20h; | Example 124N-((ls,4s)-4-(2-(4'-(((3S,5R)-3,5-dimethylpiperazin-l-yl)methyl)-2'- (morpholinomethyl)biphenyl-3-yloxy)-5-fluoronicotinamido)cyclohexyl)-4,5,6,7- tetrahydropyrazolo [ 1 ,5-a] pyridine-2-carboxamide HATU (0.113 g, 0.30 mmol) was added to a solution of N-((ls,4s)-4-aminocyclohexyl)-2-(4'- (((3S,5R)-3,5-dimethylpiperazin-l-yl)methyl)-2'-(morpholinomethyl)biphenyl-3-yloxy)-5- fluoronicotinamide (0.2 g, 0.27 mmol), 4,5,6, 7-tetrahydropyrazolo[l,5-a]pyridine-2- carboxylic acid (0.049 g, 0.30 mmol) and DIPEA (0.236 mL, 1.35 mmol) in DMF (5 mL) and the solution stirred at RT for 20 h. The mixture was purified by reverse phase HPLC with aqTFA/MeCN as eluant to afford the title compound as a white solid. Yield: 144 mg 1H NMR (400 MHz, CD3OD) δ 8.12 (d, J= 3.1 Hz, IH), 8.06 (m, IH), 8.03 (m, IH), 7.68 (m, IH), 7.60 (t, J= 7.8 Hz, IH), 7.46 (d, J= 8.0 Hz, IH), 7.33 (m, IH), 7.24 (d, J= 7.8 Hz, IH), 7.21 (m, IH), 6.41 (s, IH), 4.47 (s, 2H), 4.46 (s, 2H), 4.09 (t, J= 6.3 Hz, 2H), 3.97 (m, IH), 3.86 - 3.75 (m, 6H), 3.71 (m, 2H), 3.34 - 3.18 (m, 4H), 2.97 - 2.75 (m, 2H), 2.79 (t, J = 6.7 Hz, 2H), 2.03 (m, 2H), 1.91 - 1.67 (m, 12H), 1.40 (d, J= 6.4 Hz, 6H). MS: APCI (+ve):779 (M+l) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With 2,4,6-tripropyl-1,3,5,2,4,6-trioxatriphosphinane-2,4,6-trioxide; triethylamine; In tetrahydrofuran; acetonitrile; | Step (d) N-((ls,4s)-4-(2-(4'-(2-((3S,5R)-3,5-Dimethylpiperazin-l-yl)ethyl)biphenyl-3- yloxy)-5-fluoronicotinamido)cyclohexyl)-4,5,6,7-tetr ahy dr opyr azolo [ 1 ,5-a] pyridine-2- carboxamideTo a solution of N-((ls,4s)-4-aminocyclohexyl)-2-(4'-(2-((3S,5R)-3,5-dimethylpiperazin-l- yl)ethyl)biphenyl-3-yloxy)-5-fluoronicotinamide, trihydrochloride (140 mg, 0.21 mmol) and 4,5,6,7-tetrahydropyrazolo[l,5-a]pyridine-2-carboxylic acid (35.5 mg, 0.21 mmol) in acetonitrile (2 mL) was added triethylamine (0.298 ml, 2.14 mmol). The mixture was allowed to stir until it became a solution. 1.57M solution of 1-propanephosphonic acid cyclic anhydride in THF (T3P) (0.667 ml, 1.05 mmol) was then added and the mixture allowed to stir for 2 hours. A further equivalent of both acid and T3P was added. The mixture was concentrated in vacuo and the residue partitioned between EtOAc and saturated NaHCC^aq). The EtOAc was evaporated and the residue purifed using reverse phase preparative chromatography (eluent = TFA(aq)/MeCN). The appropriate fractions were combined and evaporated to give a residue which was dissolved in water and lyophilised to give the title compound as a white solid. Yield: 38 mg1H NMR (400 MHz, CD3OD) δ 8.45 (d, J = 7.2 Hz, IH), 8.11 (d, J = 3.1 Hz, IH), 8.06 (dd, J = 8.0Hz, 3.1Hz, IH), 7.52 (d, J = 8.2Hz, 2H), 7.48 - 7.46 (m, 2H), 7.41 - 7.39 (m, IH), 7.27 (d, J = 8.2Hz, 2H), 7.18 - 7.12 (m, IH), 6.38 (s, IH), 4.11 (s, IH), 4.01 (t, J = 6.1Hz, 2H), 3.98 - 3.92 (m, IH), 3.48 - 3.34 (m, 4H), 2.92 (s, 4H), 2.77 (t, J = 6.4Hz, 2H), 2.36 (t, J = 12.1Hz, 2H), 2.04 - 1.96 (m, 2H), 1.87 - 1.78 (m, 8H), 1.73 - 1.65 (m, 2H), 1.32 (d, J = 6.5Hz, 6H). MS: [M+H]+=694 (calc=694) (MultiMode+) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Example 174N-((ls,4s)-4-(2-(3'-(3-((3S,5R)-3,5-Dimethylpiperazin-l-yl)propyl)biphenyl-3-yloxy)-5- fluoronicotinamido)cyclohexyl)-4,5,6,7-tetrahydr opyrazolo [ 1 ,5-a] pyridine-2- carboxamide To N-((ls,4s)-4-aminocyclohexyl)-2-(3'-(3-((3S,5R)-3,5-dimethylpiperazin-l- yl)propyl)biphenyl-3-yloxy)-5-fluoronicotinamide (0.1 g, 0.18 mmol) and 4,5,6,7- tetrahydropyrazolo[l,5-a]pyridine-2-carboxylic acid (0.033 g, 0.20 mmol) in acetonitrile (1 mL) was added triethylamine (0.249 mL, 1.79 mmol). The reaction was stirred for 10 minutes before 1-propanephosphonic acid cyclic anhydride, 1.57M solution in THF (T3P) (0.137 mL, 0.21 mmol) was added. The reaction was stirred at RT for 1 hour. The crude product was purified by preparative HPLC on a Phenomenex Gemini column using a 95-5% gradient of aqueous 0.1% TFA in methanol as eluent. The fractions containing the desired compound were freeze dried to afford the title compound as a white solid. Yield: 42 mg 1H NMR (SOO MHz, CD3OD) δ 8.14 - 8.06 (m, 2H), 7.53 - 7.42 (m, 6H), 7.32 (t, J= 9.6 Hz, IH), 7.22 - 7.15 (m, 2H), 6.36 (s, IH), 4.19 - 4.09 (m, IH), 4.03 - 3.90 (m, 3H), 3.87 - 3.67 <n="266"/>(m, 4H), 3.22 (t, J= 8.6 Hz, 2H), 3.06 (t, J= 12.0 Hz, 2H), 2.79 - 2.70 (m, 4H), 2.16 - 1.96 (m, 4H), 1.93 - 1.61 (m, 10H), 1.39 (d, J= 17.1 Hz, 6H). MS: [M+H]+=708 (calc=708) (MultiMode+) |
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