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Chemical Structure| 3543-74-6
Chemical Structure| 3543-74-6
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Product Details of [ 3543-74-6 ]

CAS No. :3543-74-6 MDL No. :MFCD09840918
Formula : C18H27N3O4 Boiling Point : -
Linear Structure Formula :- InChI Key :SJYOJVBTSZGDQH-UHFFFAOYSA-N
M.W : 349.42 Pubchem ID :13086945
Synonyms :

Calculated chemistry of [ 3543-74-6 ]

Physicochemical Properties

Num. heavy atoms : 25
Num. arom. heavy atoms : 9
Fraction Csp3 : 0.56
Num. rotatable bonds : 11
Num. H-bond acceptors : 5.0
Num. H-bond donors : 2.0
Molar Refractivity : 97.43
TPSA : 87.82 Ų

Pharmacokinetics

GI absorption : High
BBB permeant : No
P-gp substrate : Yes
CYP1A2 inhibitor : No
CYP2C19 inhibitor : No
CYP2C9 inhibitor : No
CYP2D6 inhibitor : No
CYP3A4 inhibitor : No
Log Kp (skin permeation) : -7.69 cm/s

Lipophilicity

Log Po/w (iLOGP) : 3.19
Log Po/w (XLOGP3) : 1.04
Log Po/w (WLOGP) : 1.25
Log Po/w (MLOGP) : 0.86
Log Po/w (SILICOS-IT) : 2.05
Consensus Log Po/w : 1.68

Druglikeness

Lipinski : 0.0
Ghose : None
Veber : 1.0
Egan : 0.0
Muegge : 0.0
Bioavailability Score : 0.55

Water Solubility

Log S (ESOL) : -2.2
Solubility : 2.19 mg/ml ; 0.00628 mol/l
Class : Soluble
Log S (Ali) : -2.47
Solubility : 1.17 mg/ml ; 0.00335 mol/l
Class : Soluble
Log S (SILICOS-IT) : -3.94
Solubility : 0.0406 mg/ml ; 0.000116 mol/l
Class : Soluble

Medicinal Chemistry

PAINS : 0.0 alert
Brenk : 0.0 alert
Leadlikeness : 1.0
Synthetic accessibility : 2.91

Safety of [ 3543-74-6 ]

Signal Word:Warning Class:N/A
Precautionary Statements:P280-P305+P351+P338 UN#:N/A
Hazard Statements:H302 Packing Group:N/A
GHS Pictogram:

Application In Synthesis of [ 3543-74-6 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Upstream synthesis route of [ 3543-74-6 ]
  • Downstream synthetic route of [ 3543-74-6 ]

[ 3543-74-6 ] Synthesis Path-Upstream   1~15

  • 1
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YieldReaction ConditionsOperation in experiment
78.53%
Stage #1: With sodium acetate trihydrate In water; acetic acid at 0 - 25℃; for 23 h;
Stage #2: With potassium carbonate In dichloromethane at 20 - 25℃;
Example-5
Preparation of Ethyl 4-{5-[bis(2-hydroxyethyl)amino]-1-methyl-1H-benzimidazol-2-yl}butanoate (III)
Ethyl 4-[5-amino-1-methyl-1H-benzimidazol-2-yl)butanoate (II, 200.0 g, 0.763 mol) was added to DM Water (1.1 L).
Aqueous sodium acetate.3H2O (20.0 g sodium acetate.3H2O in 100 mL DM water) and acetic acid (400 mL) was added and agitated till complete dissolution of compound of the formula II.
The reaction mixture was cooled to 0-5° C. and ethylene oxide (270.0 g, 6.12 mole) was added maintaining the temperature of the reaction mixture at 0-5° C.
The reaction mixture was stirred at 0-5° C. for 5 hours.
The temperature of reaction mixture was raised to 20-25° C. and agitated at 20-25° C. for 18 hours.
After completion of the reaction, dichloromethane (2.0 L) was added at 20-25° C. followed by addition of aqueous solution of potassium carbonate (440.0 g potassium carbonate in 1.1 L DM water) portion wise at 20-25° C. to control the evaluation of effervescence and agitated at 20-25° C. for 5-10 minutes.
The layers were separated.
The organic layer (dichloromethane) was washed with DM water (1.0 L) twice and organic layer was concentrated under vacuum at 40-50° C. till viscous mass is obtained.
The viscous mass was dissolved in acetone (1.0 L), cooled to 0-5° C. and agitated at 0-5° C. for 1 hour.
The solid separated out was filtered, washed with chilled (0-5° C.) acetone (200.0 mL) and dried at 40-50° C. under vacuum for 6 hours to give the title compound (III, 210.0 g; 78.53percent), with a purity of 99.06percent.
Reference: [1] Patent: US2014/121383, 2014, A1, . Location in patent: Paragraph 0094
[2] Patent: WO2012/176214, 2012, A2, . Location in patent: Page/Page column 5
  • 2
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YieldReaction ConditionsOperation in experiment
56.3% With calcium carbonate In acetonitrile at 80 - 90℃; Example-1
Preparation of Ethyl 4-{5-[bis(2-hydroxyethyl)amino]-1-methyl-1H-benzimidazol-2-yl}butanoate (III)
Ethyl 4-[5-amino-1-methyl-1H-benzimidazol-2-yl)butanoate (II, 40.0 g, 0.153 mol) was added to 2-bromoethanol (80 mL) and agitated for 15-30 minutes.
Acetonitrile (80 mL) and calcium carbonate (61.3 g, 0.61 mol) were added to the reaction mixture.
The reaction mixture was heated to 80-90° C. within 2 hours and refluxed at 80-90° C. for 34-38 hours.
The reaction mixture was cooled to below 70° C. and acetonitrile (80.0 mL) was added.
The reaction mixture was further cooled to 20-30° C. and filtered through celite prewashed with acetonitrile.
The filtrate was concentrated at 50-60° C. under vacuum till viscous mass is obtained.
The viscous mass was cooled to 20-30° C. Dichloromethane (320.0 mL) was added to the viscous mass under stirring and washed with potassium carbonate solution (32.0 g in 200 mL water).
The organic layer was washed with DM water twice.
The organic layer (Dichloromethane) was concentrated under vacuum at 35-40° C. till viscous mass is attained.
The viscous mass was dried under vacuum at 35-40° C. for one hour.
Ethyl acetate (160.0 mL) was added to the viscous mass and cooled to 0-5° C. and stirred for one hour.
The solid separated out was filtered and washed with ethyl acetate.
The isolated solid was dissolved in dichloromethane and concentrated the solution under vacuum at 35-40° C. till viscous mass.
The viscous mass was dissolved in acetone and cooled to 0-5° C. under stirring.
The solid separated out was filtered, washed with acetone and dried at 40-45° C. under vacuum for 4-6 hours to give the title compound (III, 30.1 g; 56.30percent), with a purity of 97.22percent.
343.5 g With potassium carbonate In water at 69 - 70℃; for 13.5 h; Large scale [0079] To a solution of 81.3 g (650.6 mmol) 2-bromoethanol, 1 g potassium iodide and 100 g water was added 17.0g (65 mmol) compound (6). The reaction mixture was heated to 65-70 °C and held at this temperature for 8 h to 12 h.The pH value of the solution was held between 4.2-5.5 during this period by dropwise addition of a solution of 20.0 g(151.4 mmol) diammonium hydrogen phosphate in 35 g water. The control of pH over the duration of the reaction waseffected through use of a pH electrode. The conversion was followed by HPLC. The reaction was continued until thefraction of compound (7A) was ≤ 1.5 percent. Thereby ca. 8percent of compound (7B) had formed and the proportion of compound(7) was ca. 87percent. The reaction mixture was subsequently concentrated to dryness at ca. 55-60 °C under vacuum. Tothe residue was added 150 g water and, preferably with an alkali metal carbonate, the pH value adjusted to ca. 8.5. Thedesired product (7) was extracted with 200 g methylene chloride or 225 g chloroform, and the organic phase subsequentlywashed with 60 - 80 g water. The organic phase was then concentrated to dryness and the remaining oil or alreadycrystalline residue dissolved in 200 g ethyl acetate or alternatively in 60 g actetonitrile. Compound (7) crystallised at ca.5 °C and was filtered under suction, washed with 20 g cold ethyl acetate or alternatively with 15 g cold acetonitrile anddried at 60 -70 °C. The yield of compound (7) was 18.3 g (52.4 mmol) with a content of ≥ 98.2percent (80.5 percent of theory). Thecrude product contained ≤0.6percent compound (7A) and compound (7B) respectively as well as <0.15percent of compound (7C).0082] Analogous to Example 4 but with use of 9.0 g (65 mmol) potassium carbonate dissolved in 12 g water to holdthe pH value between 4.2 - 5.5. Identical results in terms of yield and quality.[0084] This example is a scaled-up analogue of Example 6 with use of 340 g (1.3 mol) compound (6), 2000 ml waterand 1625 g (13 mol) 2-bromoethanol. The reaction was performed without potassium iodide at 69 - 70°C.. The pH valuewas held between 4.2 - 5.5 using a solution of 138 g sodium carbonate (1.3 mol) in 500 g water. Until a content ofcompound (7A) of ≤1.5percent was reached, the duration of the reaction was 13.5 h. The yield of compound (7) was 365 gcrude and 343.5 g after recrystallisation from acetonitrile (75.6percent of theory).
17.2 g With diammonium phosphate; potassium iodide In water at 65 - 70℃; To a solution of 81.3 g (650.6 mmol) 2-bromoethanol, 1 g potassium iodide and 100 g water was added 17.0 g (65 mmol) compound (6). The reaction mixture was heated to 65-70° C. and held at this temperature for 8 h to 12 h. The pH value of the solution was held between 4.2-5.5 during this period by dropwise addition of a solution of 20.0 g (151.4 mmol) diammonium hydrogen phosphate in 35 g water. The control of pH over the duration of the reaction was effected through use of a pH electrode. The conversion was followed by HPLC. The reaction was continued until the fraction of compound (7A) was ≦1.5percent. Thereby ca. 8percent of compound (7B) had formed and the proportion of compound (7) was ca. 87percent. The reaction mixture was subsequently concentrated to dryness at ca. 55-60° C. under vacuum. To the residue was added 150 g water and, preferably with an alkali metal carbonate, the pH value adjusted to ca. 8.5. The desired product (7) was extracted with 200 g methylene chloride or 225 g chloroform, and the organic phase subsequently washed with 60-80 g water. The organic phase was then concentrated to dryness and the remaining oil or already crystalline residue dissolved in 200 g ethyl acetate or alternatively in 60 g acetonitrile. Compound (7) crystallised at ca. 5° C. and was filtered under suction, washed with 20 g cold ethyl acetate or alternatively with 15 g cold acetonitrile and dried at 60-70° C. The yield of compound (7) was 18.3 g (52.4 mmol) with a content of ≧98.2percent (80.5percent of theory). The crude contained ≦0.6percent compound ( 7A) and compound (7B) respectively as well as <0.15percent of compound (7C). The crude product obtained was recrystallized from ethyl acetate, or alternatively from acetonitrile, toluene, propan-2-ol, tetrahydrofuran, acetone, isopopyl acetate or water, prior to further conversion to compound ( 8). Thereby the yield of compound (7) was 17.2 g (94.0percent recrystallization yield) with a content of >99.2percent, wherein compound (7A) was removed below a content of 0.2percent and compound (7B) below 0.3percent. Through the course of the reaction, the content of compound (7C) was kept below 0.15percent, as this compound can only poorly be removed by recrystallization from the above described solvents. The overall yield of this step was 76.5percent of theory and was thus ca. 12.5percent higher than that described in the procedure using ethylene oxide as according to DD34727 and ca. 31percent higher in comparison to the favoured procedure of WO2011079193 involving addition of Hünig's base.
Reference: [1] Patent: US2014/121383, 2014, A1, . Location in patent: Paragraph 0086; 0087
[2] Patent: EP2690096, 2014, A1, . Location in patent: Paragraph 0084
[3] Patent: US2014/31560, 2014, A1, . Location in patent: Paragraph 0107; 0108
  • 3
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YieldReaction ConditionsOperation in experiment
78.53% With sodium acetate; acetic acid In water at 0 - 25℃; for 23 h; Example-5 Preparation of Ethyl 4-{5-[bis(2-hydroxyethyI)amino]-l-methyl-lH-benzimidazol- 2-yl} butanoate (III) Ethyl 4-[5-amino-l -methyl- l H-benzimidazol-2-yl)butanoate (II, 200.0g, 0.763mol) was added to DM Water (1.1L). Aqueous sodium acetate.3H20 (20.0g sodium acetate.3H20 in lOOmL DM water) and acetic acid (400mL) was added and agitated till complete dissolution of compound of the formula II. The reaction mixture was cooled to 0-5°C and ethylene oxide (270. Og, 6.12mole) was added maintaining the temperature of the reaction mixture at 0-5°C. The reaction mixture was stirred at 0-5°C for 5 hours. The temperature of reaction mixture was raised to 20-25°C and agitated at 20-25°C for 18 hours. After completion of the reaction, dichloromethane (2.0L) was added at 20-25°C followed by addition of aqueous solution of potassium carbonate (440. Og potassium carbonate in 1.1L DM water) portion wise at 20-25°C to control the evaluation of effervescence and agitated at 20-25°C for 5-10 minutes. The layers were separated. The organic layer (dichloromethane) was washed with DM water (1.0L) twice and organic layer was concentrated under vacuum at 40-50°C till viscous mass is obtained. The viscous mass was dissolved in acetone (1.0L), cooled to 0-5°C and agitated at 0-5°C for 1 hour. The solid separated out was filtered, washed with chilled (0-5°C) acetone (200.0mL) and dried at 40-50°C under vacuum for 6 hours to give the title compound (III, 210.0g; 78.53percent), with a purity of 99.06percent.
Reference: [1] Patent: WO2013/46223, 2013, A1, . Location in patent: Page/Page column 24
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Reference: [1] Patent: WO2013/150020, 2013, A1, . Location in patent: Page/Page column 17
  • 5
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YieldReaction ConditionsOperation in experiment
63 g With acetic acid In water at 0 - 20℃; for 31 h; Example 1
Preparation of 1H-Benzimidazol-1-Methyl-5-N,N-di(2-Hydroxyethyl)-2-Butanoic Acid Ethyl Ester
1H-Benzimidazol-1-methyl-5-amino-2-butanoic acid (50 gm), water (285 ml) and acetic acid (80 ml) were added at room temperature.
The solution was then cooled to 0 to 5° C. under stirring and ethylene oxide gas was passed in the reaction till the reaction mixture weight increases to 60 gm.
The reaction mass was maintained for 1 hour at 0 to 5° C. and then temperature allowed to room temperature.
The reaction mass was maintained for 30 hours at room temperature and then added water (2000 ml) and dichloromethane (2000 ml).
To the reaction mass was added sodium bicarbonate (230 gm) and then the layers were separated.
The aqueous layer was extracted with dichloromethane.
The organic layers were combined and the solvent was distilled off under vacuum to obtain a residual solid.
To the residual solid was added hexane (400 ml) and stirred for 30 minutes at room temperature.
The solid obtained was collected by filtration, washed with cyclohexane and then dried at 35 to 40° C. for 2 hours 30 minutes to obtain 63 gm of 1H-benzimidazol-1-methyl-5-N,N-di(2-hydroxyethyl)-2-butanoic acid ethyl ester.
Reference: [1] Patent: US2014/121384, 2014, A1, . Location in patent: Paragraph 0041
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Reference: [1] Patent: EP2690096, 2014, A1, . Location in patent: Paragraph 0079; 0080
  • 7
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  • [ 107-07-3 ]
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YieldReaction ConditionsOperation in experiment
10 g at 65 - 70℃; EXAMPLE-II
Preparation of Ethyl 4-(5-(bis(2-Hydroxyethyl)Amino)-1-Methyl-1H-Benzo[d]-Imidazol-2-yl)Butanoate (Formula-IV)
To a clean dry flask were charged compound of formula III (20 g), sodium carbonate (16.24 g), sodium Iodide (10.6 g) and 80 ml of 2-chloroethanol.
The mixture was stirred for 5 minutes at room temperature and the reaction mass was heated to 65-70° C. and maintained for 8-12 hours.
The mass was cooled to room temperature and pH adjusted to 1.0 using 6N HCl.
The aqueous layer was extracted with ethyl acetate and the aqueous layer pH is adjusted to 8 to 9 using sodium carbonate solution.
The Aqueous layer is extracted with dichloromethane and is distilled out completely and the solid obtained which is then purified in ethyl acetate to give 10 g of the title compound.
Reference: [1] Patent: WO2012/7966, 2012, A2, . Location in patent: Page/Page column 4-5
[2] Patent: US2013/317234, 2013, A1, . Location in patent: Paragraph 0025
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Reference: [1] Patent: WO2012/7966, 2012, A2,
[2] Patent: EP2690096, 2014, A1,
[3] Patent: EP2690096, 2014, A1,
  • 9
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  • [ 3543-74-6 ]
Reference: [1] Patent: EP2690096, 2014, A1,
[2] Patent: EP2690096, 2014, A1,
[3] Patent: US2014/31560, 2014, A1,
  • 10
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Reference: [1] Patent: EP2690096, 2014, A1,
[2] Patent: EP2690096, 2014, A1,
[3] Patent: US2014/31560, 2014, A1,
  • 11
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Reference: [1] Patent: EP2690096, 2014, A1,
[2] Patent: EP2690096, 2014, A1,
[3] Patent: US2014/31560, 2014, A1,
  • 12
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Reference: [1] Patent: EP2690096, 2014, A1,
[2] Patent: EP2690096, 2014, A1,
  • 13
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Reference: [1] Patent: WO2013/150020, 2013, A1,
  • 14
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  • [ 3543-74-6 ]
Reference: [1] Patent: WO2013/150020, 2013, A1,
  • 15
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  • [ 3543-75-7 ]
YieldReaction ConditionsOperation in experiment
76.2%
Stage #1: With thionyl chloride In dichloromethane at -1 - 22℃; for 17 h;
Stage #2: With hydrogenchloride In water at 75℃;
Example 9
Synthesis of 4-[5-[bis(2-chloroethyl)amino]-1-methyl-1H-benzimidazol-2-yl]butanoic acid (9, Bendamustine hydrochloride hydrate)
250 g (0.7154 mol) compound (7) was dissolved in 2000 ml methylene chloride and 212 g (1.78 mol) thionyl chloride added at -1° C. within a period of 30 minutes.
Thereby the temperature rose briefly to ca. 4° C.
Following addition the reaction solution was stirred for a further 30 minutes at -1° C.
The solution was then stirred for ca. 16 h at ca. 22° C.
Thereafter the solvent and excess thionyl chloride were removed by distillation under vacuum.
To hydrolyse the ester the remaining residue (compound 8 as its hydrochloride) was treated with 2.6 kg 37percent hydrochloric acid and 1.4 l water, heated to ca.
75° C. and held at this temperature for 30-40 minutes. 25 g activated carbon was then added and stirred for 10 minutes at 75° C.
The solution was filtered and concentrated under vacuum.
To crystallise crude compound (9) the residue was dissolved in 1000 ml water at ca.
55° C., the solution cooled to ca.
-2° C. and then held at this temperature for ca. 30 minutes.
The crude product (9) was filtered off, washed with 250 g water and 200 g acetone and dried for 2 h at ca. 35° C. under vacuum.
The yield of crude compound (9) was 245 g (0.5936 mol) and had a water content of 4.5percent (83percent of theory). 245 g compound (9) were dissolved in 330 g 37percent hydrochloric acid at ca. 40° C., treated with 1.28 kg water (temperature ca. 35° C.) and 650 g acetone (temperature ca. 35° C.) and stirred for 10 minutes. Crystallisation was initiated by the addition of 0.5 g Bendamustine hydrochloride hydrate, the mixture cooled within a period of 2 h to ca. −20° C. and then held at this temperature for ca. 90 minutes. The precipitate was filtered under suction. The crystals were washed initially with a mixture of 120 g water and 90 g acetone and subsequently with 275 g acetone. The pure Bendamustine hydrochloride hydrate was dried for ca. 2 h at ca. 35° C. under vacuum. Thus 225 g (0.545 mol) of pure (>99.8percent content) compound (9) was obtained with an overall yield of 76.2percent for this step. Through drying of the Bendamustine hydrochloride hydrate under vacuum at ca. 50° C. the water content could be adjusted to ca. 1percent in contrast to 4.4percent of the mono hydrates.
75%
Stage #1: With thionyl chloride In chloroform at 0 - 5℃;
Stage #2: With hydrogenchloride; pyrographite In water at 30℃; Reflux
HBI-ethylbutyrate (molecular weight = 349.42 g/mol) was dissolved in CHCI3 (10 x mass of HBI-ethylbutyrate). The solution was cooled to about 0 - 5 °C and thionyl chloride (molecular weight = 118.96 g/mol, 2.11 equivalents) was added over 1 - 2 hours. After stirring for an additional 0.25 - 1 hour, the mixture was warmed to 25 +/- 5 °C and stirred for an additional 20 - 24 hours. Aqueous hydrochloride acid (32percent, 2.8 x mass of HBI-ethylbutyrate) was added and the organic phase was removed. The aqueous phase was degassed at 30 °C for 15 - 30 minutes at 100-200 mbar). A suspension of active charcoal (0.02 x mass of HBI ethylbutyrate) in aqueous hydrochloric acid (0.2 x mass of HBI ethylbutyrate) was added to the aqueous phase. The mixture was heated to 85 - 90 °C within 1 hour and stirred for 4 - 5 hours at reflux. After cooling, the suspension was filtered and rinsed with aqueous hydrochloric acid (0.2 x mass of HBI ethylbutyrate). The solvent was distilled under reduced pressure at an inner temperature of<= 65 °C. About seventy percent (+/-5percent) of the total hydrochloric acid was distilled off. Warm (35-40 °C) water (4x mass of HBI ethylbutyrate) was added. Seeding may be necessary if no crystallization occurs within 30 minutes. After crystallization, the thick suspension is cooled to about 15 - 25 °C and stirred for 1 - 2 hours or overnight at<= 15 - 25 °C. The product is filtered, washed three times with water (0 - 5 °C, total water = 4 x mass of HBI ethylbutyrate) and at least three times with acetone (0 - 5 °C, total acetone = 4 x mass of HBI ethylbutyrate). The washed product was treated at least 4 times with acetone (2 x mass of HBI ethylbutyrate) at reflux for at least 1 hour. The hot suspension was filtered and the solid dried at<= 35 - 40 °C. Yield = 75 +/- 15percent bendamustine hydrochloride.
54 g
Stage #1: With thionyl chloride In dichloromethane at 0 - 45℃; for 1.75 h;
Stage #2: With hydrogenchloride In water at 80 - 90℃; for 3 h;
Example 2
Preparation of Bendamustine Hydrochloride
To a solution of 1H-benzimidazol-1-methyl-5-N,N-di(2-hydroxyethyl)-2-butanoic acid ethyl ester (63 gm) as obtained in example 1 in dichloromethane (630 ml) was added thionyl chloride (50.4 gm) for 15 minutes at 0 to 5° C.
The contents were heated to 35 to 45° C. and then maintained for 2 hours 30 minutes.
To the reaction mixture was added dichloromethane (1000 ml) and then the layers were separated.
The aqueous layer was extracted with dichloromethane and combined the organic layers.
The organic layer was treated with charcoal (5percent, 5 gm) and the solvent was ,distilled off under vacuum to obtain a residual mass.
The residual mass was dissolved in concentrated hydrochloric acid (630 ml) and then heated to 80 to 90° C.
The reaction mass was maintained for 3 hours at 80 to 90° C. and the solvent was distilled off under vacuum to obtain a residual solid.
To the residual solid was added water (125 ml), stirred for 20 minutes and filtered.
The solid obtained was dried to give 54 gm of bendamustine hydrochloride.
Reference: [1] Patent: US2014/31560, 2014, A1, . Location in patent: Paragraph 0113; 0114; 0115; 0116; 0117; 0118
[2] Patent: WO2012/106117, 2012, A1, . Location in patent: Page/Page column 11
[3] Patent: CN105693620, 2016, A, . Location in patent: Paragraph 0135; 0136; 0137; 0138; 0139; 0140; 0141
[4] Patent: WO2010/144675, 2010, A1, . Location in patent: Page/Page column 20
[5] Patent: WO2012/176214, 2012, A2, . Location in patent: Page/Page column 5-6
[6] Patent: US2013/317234, 2013, A1, . Location in patent: Paragraph 0026
[7] Patent: EP2690096, 2014, A1,
[8] Patent: US2014/121384, 2014, A1, . Location in patent: Paragraph 0042
[9] Patent: US2016/159748, 2016, A1, . Location in patent: Paragraph 0099; 0100; 0101; 0102
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Related Parent Nucleus of
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