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Quinolone-3-amidoalkanol: A New Class of Potent and Broad-Spectrum Antimicrobial Agent
Dube, Phelelisiwe S. ; Angula, Klaudia T. ; Legoabe, Lesetja J. , et al. ACS Omega,2023,8(19):17086-17102. DOI: 10.1021/acsomega.3c01406 PubMed ID: 37214682
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Abstract: Herein, we describe 39 novel quinolone compounds bearing a hydrophilic amine chain and varied substituted benzyloxy units. These compounds demonstrate broad-spectrum activities against acid-fast bacterium, Gram-pos. and -neg. bacteria, fungi, and leishmania parasite. Compound 30 maintained antitubercular activity against moxifloxacin-, isoniazid-, and rifampicin-resistant Mycobacterium tuberculosis, while 37 exhibited low micromolar activities (<1 μg/mL) against World Health Organization (WHO) critical pathogens: Cryptococcus neoformans, Acinetobacter baumannii, and Pseudomonas aeruginosa. Compounds in this study are metabolically robust, demonstrating % remnant of >98% after 30 min in the presence of human, rat, and mouse liver microsomes. Several compounds thus reported here are promising leads for the treatment of diseases caused by infectious agents.
Purchased from AmBeed: 403-19-0 ; 636-93-1 ; 5847-59-6 ; 87-13-8 ; 1548-61-4 ; 99-53-6 ; 402-49-3 ; 619-08-9 ; 18880-00-7 ; 111-41-1 ; 619-10-3 ; 766-80-3 ; 140-75-0 ; 823-78-9 ; 622-95-7 ; 402-23-3 ; 141776-91-2 ...More
CAS No. : | 403-19-0 | MDL No. : | MFCD00051970 |
Formula : | C6H4FNO3 | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | ORPHLVJBJOCHBR-UHFFFAOYSA-N |
M.W : | 157.10 | Pubchem ID : | 9825 |
Synonyms : |
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Signal Word: | Danger | Class: | 9 |
Precautionary Statements: | P261-P264-P270-P272-P273-P280-P301+P312+P330-P302+P352-P305+P351+P338+P310-P333+P313-P391-P501 | UN#: | 3077 |
Hazard Statements: | H302-H315-H317-H318-H410 | Packing Group: | Ⅲ |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
30 % | With nitric acid In hexane; dichloromethane | A. 2-Fluoro-4-nitrophenol To a stirred solution of 2-fluorophenol (32.3 g, 0.288 mole) in methylene chloride which was cooled to -10° C. (ice-salt bath), was slowly added 90 percent nitric acid (22 g, 0.31 mole HNO3) over a one-hour period. During the addition, the temperature was maintained at about -5° C. After the addition was complete, stirring was continued at 0° C. for an additional hour. At the end of this period, the precipitate which had formed was filtered and washed with several portions of cold methylene chloride. G.C. and thin-layer chromatography (silica gel, 7:3 hexane-acetone) showed that this material was essentially a single compound and was the more polar and less volatile of the two products which formed in the reaction. This solid was taken up in ether, washed with water, dried (MgSO4) and the solvent evaporated. The resulting solid was recrystallized from methylcyclohexane to give 13 g of a light yellow solid: m.p.=119°-121° C. NMR (CDCl3) showed this to be the desired 2-fluoro-4-nitrophenol. The methylene chloride mother liquor was washed with water, dried (MgSO4) and the solvent evaporated. The solid which resulted was triturated with boiling hexane (3*150 ml). This effectively removed all of the least polar-more volatile reaction product. This hexane solution was treated with charcoal, filtered, concentrated to about 300 ml and cooled to give 13.5 g (30 percent) of by-product 2-fluoro-6-nitrophenol as a yellow solid: m.p.=70°-86° C. |
30 % | With nitric acid In hexane; dichloromethane | A. 2-Fluoro-4-nitrophenol To a stirred solution of 2-fluorophenol (32.3 g, 0.288 mole) in methylenechloride which was cooled to -10°C (ice-salt bath), was slowly added 90 percent nitric acid (22 g, 0.31 mole HNO3) over a one-hour period. During the addition, the temperature was maintained at about -5°C. After the addition was complete, stirring was continued at 0°C for an additional hour. At the end of this period, the precipitate which had formed was filtered and washed with several portions of cold methylene chloride. G.C. and thin-layer chromatography (silica gel, 7:3 hexane-acetone) showed that this material was essentially a single compound and was the more polar and less volatile of the two products which formed in the reaction. This solid was taken up in ether, washed with water, dried (MgSO4) and the solvent evaporated. The resulting solid was recrystallized from methylcyclohexane to give 13 g of a light yellow solid: m.p. = 119-121°C. NMR (CDCl3) showed this to be the desired 2-fluoro-4-nitrophenol. The methylene chloride mother liquor was washed with water, dried (MgSO4) and the solvent evaporated. The solid which resulted was triturated with boiling hexane (3 x 150 ml). This effectively removed all of the least polar - more volatile reaction product. This hexane solution was treated with charcoal, filtered, concentrated to about 300 ml and cooled to give 13.5 g (30 percent) of 2-fluoro-6-nitrophenol as a yellow solid: m.p. = 70-86°C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
30 % | With nitric acid In hexane; dichloromethane | A. 2-Fluoro-4-nitrophenol To a stirred solution of 2-fluorophenol (32.3 g, 0.288 mole) in methylene chloride which was cooled to -10° C. (ice-salt bath), was slowly added 90 percent nitric acid (22 g, 0.31 mole HNO3) over a one-hour period. During the addition, the temperature was maintained at about -5° C. After the addition was complete, stirring was continued at 0° C. for an additional hour. At the end of this period, the precipitate which had formed was filtered and washed with several portions of cold methylene chloride. G.C. and thin-layer chromatography (silica gel, 7:3 hexane-acetone) showed that this material was essentially a single compound and was the more polar and less volatile of the two products which formed in the reaction. This solid was taken up in ether, washed with water, dried (MgSO4) and the solvent evaporated. The resulting solid was recrystallized from methylcyclohexane to give 13 g of a light yellow solid: m.p.=119°-121° C. NMR (CDCl3) showed this to be the desired 2-fluoro-4-nitrophenol. The methylene chloride mother liquor was washed with water, dried (MgSO4) and the solvent evaporated. The solid which resulted was triturated with boiling hexane (3*150 ml). This effectively removed all of the least polar-more volatile reaction product. This hexane solution was treated with charcoal, filtered, concentrated to about 300 ml and cooled to give 13.5 g (30 percent) of by-product 2-fluoro-6-nitrophenol as a yellow solid: m.p.=70°-86° C. |
30 % | With nitric acid In hexane; dichloromethane | A. 2-Fluoro-4-nitrophenol To a stirred solution of 2-fluorophenol (32.3 g, 0.288 mole) in methylenechloride which was cooled to -10°C (ice-salt bath), was slowly added 90 percent nitric acid (22 g, 0.31 mole HNO3) over a one-hour period. During the addition, the temperature was maintained at about -5°C. After the addition was complete, stirring was continued at 0°C for an additional hour. At the end of this period, the precipitate which had formed was filtered and washed with several portions of cold methylene chloride. G.C. and thin-layer chromatography (silica gel, 7:3 hexane-acetone) showed that this material was essentially a single compound and was the more polar and less volatile of the two products which formed in the reaction. This solid was taken up in ether, washed with water, dried (MgSO4) and the solvent evaporated. The resulting solid was recrystallized from methylcyclohexane to give 13 g of a light yellow solid: m.p. = 119-121°C. NMR (CDCl3) showed this to be the desired 2-fluoro-4-nitrophenol. The methylene chloride mother liquor was washed with water, dried (MgSO4) and the solvent evaporated. The solid which resulted was triturated with boiling hexane (3 x 150 ml). This effectively removed all of the least polar - more volatile reaction product. This hexane solution was treated with charcoal, filtered, concentrated to about 300 ml and cooled to give 13.5 g (30 percent) of 2-fluoro-6-nitrophenol as a yellow solid: m.p. = 70-86°C. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With hydrogen In methanol at 20℃; | A mixture of platinum oxide (0.010 g) and 2-fluoro-4-nitrophenol (Aldrich, 1.24 g, 7.78 mmol, 1.0 eq) in MeOH (100 ml) were stirred under a H2 atmosphere at 50 psi at room temperature. The reaction mixture was filtered through celite and the filtrate concentrated in vacuo to afford the title compound (1.00 g, 100percent), as a solid which was used without further purification. 1H NMR (DMSO-d6) δ 8.57 (s, 1H), 6.46-6.47 (m, 1H), 6.33-6.46 (m, 1H), 6.19-6.21 (m, 1H), 4.79 (s, 2H); MS (ESI+) m/z 128 (M+H)+. |
100% | With hydrogen In methanol at 20℃; | A mixture of platinum oxide (0.010 g) and 2-fluoro-4-nitrophenol (Aldrich, 1.24 g, 7.78 mmol, 1.0 eq) in MeOH (100 mL) was stirred under a H2 atmosphere at 50 psi at room temperature. The reaction mixture was filtered through Celite.(R). and the filtrate concentrated in vacuo to afford the title compound (1.00 g, 100percent), as a solid which was used without further purification. 1H NMR (DMSO-d6) δ 8.57 (s, 1H), 6.46-6.47 (m, 1H), 6.33-6.46 (m, 1H), 6.19-6.21 (m, 1H), 4.79 (s, 2H); MS(ESI+) m/z 128 (M+H)+. |
100% | With hydrogen In methanol at 20℃; | B) 2-Fluoro-4-aminophenol; A mixture of platinum oxide (0.010 g) and 2-fluoro-4-nitrophenol (Aldrich, 1.24 g, 7.78 mmol, 1.0 eq) in MeOH (100 mL) was stirred under a H2 atmosphere at 50 psi at room temperature. The reaction mixture was filtered through Celite.(R). and the filtrate concentrated in vacuo to afford the desired compound (1.00 g, 100percent), as a solid which was used without further purification. 1H NMR (DMSO-d6) δ 8.57 (s, 1H), 6.46-6.47 (m, 1H), 6.33-6.46 (m, 1H), 6.19-6.21 (m, 1H), 4.79 (s, 2H); MS(ESI+) m/z 128 (M+H)+. |
99% | With palladium 10% on activated carbon; hydrogen In methanol at 20℃; | [0223] To a solution of 2-fluoro-4-nitrophenol (5.0 g, 31.8 mmol) in methanol (200 mL) was added Pd/C (1.0 g, 10percent). The reaction was stirred at rt overnight in a H2 atmosphere. The mixture was filtered through a pad of CELITE®, then washed with MeOH (5 mL). The filtrate was concentrated in vacuo to give the title compound as a brown solid (4.02 g, >99percent). MS (ESI, pos. ion) m/z: 128.1 [M+H]+. |
99% | With palladium 10% on activated carbon; hydrogen In methanol at 20℃; | Step 1) 4-amino-2-fluorophenol To a solution of 2-fluoro-4-nitrophenol (5.0 g, 31.8 mmol) in methanol (200 mL) was added Pd/C (1.0 g, 10percent). The reaction was stirred at rt overnight in a H2 atmosphere. The mixture was filtered through a pad of CELITE®, then washed with MeOH (5 mL). The filtrate was concentrated in vacuo to give the title compound as a brown solid (4.02 g, >99percent). MS (ESI, pos. ion) m/z: 128.1 [M+H]+. |
96% | With hydrogen In ethanol; water for 0.5 h; | A mixture of 2-fluoro-4-nitrophenol (5.78 g, 36.8 mmol) and palladium on carbon (10percent, 50percent water, Degussa type, 0.525 g, 0.247 mmol) in 100 mL EtOH was shaken in a Parr shaker at 40 psi for 30 min. The reaction mixture was filtered though Celite.(R)., washing with additional EtOH. The filtrate and washings were combined, concentrated, and dried under high vacuum to give the title compound (4.47 g, 96percent) as a brown solid. Exact mass calculated for C6H6FNO: 127.04, found: LCMS mlz = 128.0 [M+H]+; lU NMR (400 MHz, DMSO- ) δ ppm 4.69 (s, 2H), 6.19-6.22 (m, 1H), 6.33-6.37 (m, 1H), 6.60-6.65 (m, 1H), 8.54 (s, 1H). |
90% | With hydrogen In methanol at 20℃; | 35 (1 .19g, 7.57mmol) was dissolved in methanol (40mL) and hydrogenated over 10percent Pd/C (125 mg), at rt and atmospheric pressure. The suspension was filtered over celite and washed with excess eOH. Removal of excess solvent under reduced pressure afforded 867 mg of light brown solid. |
87% | With hydrogen In methanol at 20℃; for 3 h; | 4-Amino-2-fluorophenol (4); To a degassed solution of 4-nitro-2-fluorophenol (3) (16 g, 102 mmol) in MeOH (150 mL) was added palladium on charcoal (10percent) Degussa type (3.0 g, 2.82 mmol). The mixture was stirred at r.t. under hydrogen atmosphere for 3h, filtered through a celite pad and evaporated under reduced pressure. The residue was triturated with Et2O (50 mL) to afford compound 4 (11.264 g, 87percent yield) as a dark-brown solid. MS (m/z): 128.1 (M+H). 1H NMR (400 MHz, DMSO-de) δ (ppm): 8.57 (s, IH), 6.62 (dd, J = 10.0, 8.4 Hz, IH), 6.34 (dd, J = 13.4, 2.6 Hz, IH), 6.20 (ddd, J = 8.6, 2.6, 1.2 Hz, IH), 4.67 (s, 2H). |
85% | With hydrogen In ethanol at 20℃; for 3 h; | Preparation 26 4-amino-2-fluoro -phenol; A solution of 2-fluoro-4-nitro-phenol (400 mg, 2.55 mMol) and ethanol (6 ml_) was treated with 10percent Pd/C (42.6 mg). The reaction mixture was hydrogenated for 3 hours at 40 psi at room temperature. The reaction mixture was filtered through a pad of Arbocel .(R). with ethanol and then evaporated to dryness to give a dark solid (248mg, 85percent).1H NMR (400MHz, CD3OD) δ =6.29-6.31(d, 1 H), 6.39-6.43 (dd, 1 H), 6.58-6.62 (m, 1 H). GC/MS: 1.66 mins m/z (Cl) = 128 [MH+] |
81% | With ammonium chloride; zinc In tetrahydrofuran; methanol at 0 - 20℃; | To a solution of 2-fluoro-4-nitrophenol (Avacado, 1.00 g, 6.37 mmol) in 4 mL of tetrahydrofuran and 6 mL of methanol at 0° C. was added zinc dust (2.08 g, 31.8 mmol, <10 micron) followed by ammonium chloride (1.70 g, 31.8 mmol). The mixture was stirred at room temperature overnight. The heterogeneous mixture was filtered through a thin pad of Celite.(R). with methanol and the filtrate was concentrated in vacuo to give 4-amino-2-fluorophenol as a brown solid which was used without further purification (656 mg, 81percent). 3-(4-Fluorophenylamino)-3-oxopropanoic acid (Compound B of Example 1, 197 mg, 1.00 mmol) was dissolved in dimethylformamide (4 mL). Triethylamine (140 μL, 1.00 mmol) was added and the solution was cooled to 0° C. 4-Amino-2-fluorophenol (Step A of Example 19, 127 mg, 1.00 mmol) was added followed by benzotriazol-1-yloxytris(dimethylamino)phosphonium hexafluorophosphate (BOP reagent, 442 mg, 1.00 mmol). The reaction was allowed to warm to room temperature and was then stirred at room temperature for 3 h. The reaction mixture was concentrated to remove methylene chloride and water was added to precipitate the product. Filtration and trituration with water gave the title compound (211 mg, 69percent) as a white solid. 1H NMR (CD3OD) δ 7.61-7.57 (m, 2H), 7.51 (dd, 1H, J=13, 2.5 Hz), 7.08-6.99 (m, 3H), 6.88 (t, 1H, J=9.4 Hz), 3.51 (s, 2H); MS (ESI+) m/z 307.44 (M+H)+. |
55.1% | With iron; ammonium chloride In ethanol; water at 20℃; for 0.5 h; | To a solution of 2-fluoro-4-nitrophenol (1.57 g, 10 mmol) in EtOH (50 mL) and H20 (18 mL) was added Fe (2.24 g, 40 mmol) and NH4C1 (4.24 g, 80 mmol). The reaction mixture was stirred at r.t. overnight. The mixture was filtered through a pad of celite. The filtrate was concentrated in vacuo. The residue was added Η20 (50 mL) and extracted by EtOAc (60 mL x 2). The combined organic phase was washed with brine, dried over anhydrous Na2S04 and concentrated in vacuo. The residue was beaten by PE/EtOAc (v/v, 10 mL/15 mL), filtered to give the title compound as a brown solid (700 mg, 55.1percent).LC-MS (ESI, pos, ion): 128.3 [M+H]+;H NMR (400 MHz, DMSO-Λ) δ (ppm): 8.56 (s, 1H), 6.62 (dd, J = 10.0, 8.6 Hz, 1H), 6.34 (dd, J= 13.4, 2.6 Hz, 1H), 6.24-6.15 (m, 1H), 4.66 (s, 2H). |
55.1% | With water; iron; ammonium chloride In ethanol at 20℃; | Iron powder (2.24 g, 40 mmol) and NH4Cl (4.24 g, 80 mmol)Add to 2-fluoro-4-nitrophenol (1.57g, 10mmol)EtOH (50mL)And H2O (18mL) solution,The reaction was stirred at room temperature overnight.The reaction solution was filtered through silica gel.The filtrate was concentrated under reduced pressure.The residue obtained was added to water (50 mL).Extract and separate the organic phase with EtOAc (60 mL x 2).Combine the resulting organic phases,Wash with saturated brine,After drying with anhydrous sodium sulfate,Concentrated under reduced pressure,The residue obtained was beaten in a mixed solvent of PE/EtOAc (v/v, 10 mL / 15 mL).filter,The title compound (700 mg, 55.1percent) was obtained. |
38% | With hydrogen In ethanol at 20℃; for 16 h; | 2-fluoro-4-nitrophenol (500 mg, 3.18 mmol), Pd (10percent on activated carbon, 31 mg), and EtOH (20 mL) were combined and stirred under atmospheric H2 at room temperature. After 16 h, the solution was diluted with EtOAc (20 mL), filtered through Celite, concentrated, and purified by preparative thin layer chromatography (30percent EtOAc in hexanes) to afford 4-amino-2-fluorophenol as a tan solid of sufficient purity for subsequent transformations (152 mg, 1.20 mmol; 38percent yield). |