Structure of 475216-25-2
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 475216-25-2 |
Formula : | C8H7FN2O3 |
M.W : | 198.15 |
SMILES Code : | O=C(NC)C1=CC=C(F)C([N+]([O-])=O)=C1 |
MDL No. : | MFCD11855197 |
InChI Key : | LTGYDUQSOZFFEM-UHFFFAOYSA-N |
Pubchem ID : | 21884186 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H320-H335 |
Precautionary Statements: | P264-P270-P301+P312-P330 |
Num. heavy atoms | 14 |
Num. arom. heavy atoms | 6 |
Fraction Csp3 | 0.12 |
Num. rotatable bonds | 3 |
Num. H-bond acceptors | 4.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 48.22 |
TPSA ? Topological Polar Surface Area: Calculated from |
74.92 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.13 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
1.04 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.51 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.86 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
-0.32 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
0.84 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.84 |
Solubility | 2.85 mg/ml ; 0.0144 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-2.2 |
Solubility | 1.24 mg/ml ; 0.00626 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.45 |
Solubility | 0.703 mg/ml ; 0.00355 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.77 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
2.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.75 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
91% | With 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride; In tetrahydrofuran; dichloromethane; at 20℃; for 2h; | [4-FLUORO-3-NITROBENZOIC] acid (3.00 g, 16.2 mmoles) was dissolved in dichloromethane (100 mL) and cooled in an ice bath to [0-5 C. EDC] (3.73 g, 19.5 mmoles) was added followed by dropwise addition of methylamine solution (8.1 mL, 16.2 mmoles, 2.0 M solution in THF). The mixture was allowed to slowly warm to room temperature and stirred for 2 h. The mixture was then diluted with ethyl acetate and washed successively with [1] M HC1, saturated aqueous [NAHCO3] and brine. The organic extracts were dried over [MGS04,] filtered and concentrated in vacuo to leave [4-FLUORO-3-NITRO-N-] methylbenzamide as a yellow solid (2.94 g, [91%)] which was used directly in the next step. |
PREPARATION 14-fluoro-/V-methyl-3-nitrobenzamideOxalyl chloride (7.09 mL, 81 mmol,) was dissolved in dichloromethane (DCM) (100 mL) under nitrogen and cooled in an ice/brine bath. A/JV-dimethylformamide (DMF) (0.42 mL, 5.4 mmol) was added dropwise and the mixture was stirred cooled for 10 minutes. Then 4-fluoro-3-nitrobenzoic acid (10.0 g, 54.0 mmol) was added slowly and reaction mixture was stirred cooled for 30 minutes. Methyl amine solution (135 mL, 270 mmol, 2M in THF) was added and reaction mixture was stirred at room temperature overnight. Reaction was diluted with satd. NaHC03 and more DCM, layers were separated and organics were dried over sodium sulfate. Organics were concentrated to give a solid which was triturated in diethyl ether, filtered and dried to give the title compound as a bright orange/yellow solid (9.72 g, 82%, >90% pure). 1H NMR (400 MHz, CHLOROFORM-d) delta 8.48 (dd, J = 2.27, 7.07 Hz, 1 H), 8.15 (m, 1 H), 7.41 (dd, J = 8.72, 10.23 Hz, 1 H), 6.34 (br. s., 1 H), 3.07 (d, J = 3.79 Hz, 3H); MS (m/z) 198.9 M+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
99% | With N-ethyl-N,N-diisopropylamine; In dichloromethane; at 20℃; | A solution of [4-FLUORO-3-NITRO-N-METHYLBENZAMIDE] (1.00 g, 5.05 mmoles) in 15 mL dichloromethane was prepared and added dropwise to a stirred solution of 3- methoxypropylamine (0.78 mL, 7.57 mmoles) and N, N-diisopropylethylamine (2.6 mL, 15.1 mmoles) in 10 mL dichloromethane. After stirring at room temperature overnight, TLC (EtOAc) revealed complete conversion to a lower Rf product. The mixture was diluted with ethyl acetate and washed successively with [1] M [HCI,] saturated aqueous [NAHCO3] and brine. The organic extracts were dried over [MGS04,] filtered and concentrated in vacuo to leave an orange solid residue. The crude product was dissolved in dichloromethane, adsorbed onto silica gel and then purified by flash column chromatography on silica gel. Elution with ethyl acetate provided pure fractions which were combined and concentrated to yield [4- (3-METHOXYPROPYLAMINO)-3-NITROPHENYL-N-] methylbenzamide as an orange solid product (1.34 g, [99%). IH] NMR [(CDC13)] was consistent with the desired product. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
86% | With N-ethyl-N,N-diisopropylamine; In ethanol; at 150℃; for 0.25h;Microwave irradiation; | PREPARATION 2N-methyl-4-[2-(methyloxy)ethyl]amino}-3-nitrobenzamideThe <strong>[475216-25-2]4-fluoro-N-methyl-3-nitrobenzamide</strong> (2.63 g, 13.3 mmol) was partially dissolved in ethanol (7 ml.) in a microwave vial and /V,/V-diisopropylethylamine (DIEA) (2.3 ml_, 13.3 mmol) and [2-(methyloxy)ethyl]amine (1.16 ml_, 13.3 mmol) were added. The vial was capped and heated in the microwave at 150C for 15 minutes. Reaction was repeated two times on same scale and all crude reactions were combined. Mixture was cooled to room temperature and left to sit for 2 hours. A solid formed and it was filtered, rinsed with diethyl ether and dried to give the title compound as an orange solid (9.19 g, 86%, >95% purity). Product was taken on without further purification. 1H NMR (400 MHz, DMSO-d6) delta 8.63 (d, J = 2.27 Hz, 1 H), 8.48 (d, J = 4.55 Hz, 1 H), 8.36 - 8.44 (m, 1 H), 7.99 (dd, J = 2.02, 9.09 Hz, 1 H), 7.16 (d, J = 9.09 Hz, 1 H), 3.51 - 3.69 (m, 4H), 3.32 (s, 3H), 2.77 (d, J = 4.55 Hz, 3H); MS (m/z) 254.0 (M+H)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
96% | With N-ethyl-N,N-diisopropylamine; In 1-methyl-pyrrolidin-2-one; at 80℃; for 72h; | To a stirred solution of <strong>[475216-25-2]4-fluoro-N-methyl-3-nitrobenzamide</strong>2 (500 mg) in N-methyl-2- pyrrolidinone (5 ml) were added 6-amino-3,4-dihydroquinolin-2(iH)-one24 (450 mg) and N,Ndiisopropylethylamine (489 mg). The reaction mixture was heated at 80 C for 3 days. LC-MS analysis indicated that the reaction was incomplete. The reaction mixture was heated at 120 Cfor 1 day. The reaction mixture was cooled to room temperature and ethyl acetate (10 ml) and water (3 ml) were added. An orange precipitate formed. The precipitate was collected by filtration, washed with ethyl acetate, and dried in vacuo to give N-methyl-3-nitro-4-((2-oxo-1,2,3,4-tetrahydroquinolin-6-yl)amino)benzamide as an orange solid (825 mg, 96 %). MS (ISP):341.0 ([M+H]j. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
19.7% | With N-ethyl-N,N-diisopropylamine; In 1-methyl-pyrrolidin-2-one; at 120℃; for 12h; | To a solution of 6-amino-3 ,4-dihydro- 1 H-i ,8-naphthyridin-2-one59 (1 .0 g) in N-methyl-2- pyrrolidinone (5 ml) were added 4-fluoro-N-methyl-3-nitro-benzamide2 (0.78 g) and N,Ndiisopropylethylamine (1.4 ml). The mixture was stirred at 120 C for 12 hours. The reaction mixture was then cooled to 20 C and poured into water. The resulting solid was collected by filtration, and the filter cake was washed with ethyl acetate and dried in vacuo to afford Nmethyl-3 -nitro-4- [(7-oxo-6, 8-dihydro-5H- 1, 8-naphthyridin-3 -yl)amino]benzamide (290 mg, 19.7%) as a brown solid. MS (ISP): 342.1 ([M+H]j. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
90% | With N-ethyl-N,N-diisopropylamine; In 1-methyl-pyrrolidin-2-one; at 120℃; | A stirred solution of <strong>[475216-25-2]4-fluoro-N-methyl-3-nitrobenzamide</strong>46 (200 mg), 5-amino-lH- benzo[d]imidazol-2(3H)-one50 (151 mg) and N,N-diisopropylethylamine (264 mu) in N-methyl-2- pyrrolidinone (1 ml) was heated at 120 C overnight. The reaction mixture was then cooled to room temperature and the crude product was collected by filtration, washed with water, and then dried in vacuo at 40 C to afford N-methyl-3-nitro-4-((2-oxo-2,3-dihydro-lH-benzo[d]imidazol- 5-yl)amino)benzamide (296 mg, 90%) as a red solid which was used in the next step without further purification. MS (ISP): 328.0 ([M+H]+). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
90 mg | To (3-(pyrimidin-5-yl)phenyl)methanamine (62.0 mg, 0.333 mmol) in ethanol (0.7 mL) were added <strong>[475216-25-2]4-fluoro-N-methyl-3-nitrobenzamide</strong> (60 mg, 0.303 mmol) and N,N- diisopropylethylamine (0.058 mL, 0.333 mmol), and the reaction mixture was heated under nitrogen at 150 C for 20 minutes under microwave conditions.The resulting mixture was tranferred to a scintilation vial (25 mL) with a minimum of ethanol (~4 mLs). Sodium dithionite (0.75 g, 4.31 mmol) in water (3 mL) was then added, and the reaction mixture was heated at 70 C for about 1 hour. 6-(Diethylamino)nicotinaldehyde (54 mg, 0.30 mmol) was then added, and the reaction mixture was heated at 60 C for 48 hours.The reaction was partitioned between 2N NH4OH and EtOAc (40 mL). The aqueous layer was further extracted with EtOAc (2 x 20 mL). The organic combined organic extractes were washed with brine (2 x 20 mL), dried over Na2S04, and evaporated in vacuo to give the crude product as a colourless oil. Purification by reverse phase HPLC (12 to 42% CH3CN/0.1 %TFA in water) afforded a TFA salt of the desired product (90 mg) as a white solid after freeze-drying. LC-MS (ES) m/z = 492 [M+H]+. 1H NMR (400 MHz, CDCb): 51 .24 (t, J = 7.2 Hz, 6H), 3.03 (d, J = 4.4 Hz, 3H), 3.60 (m, 4H), 5.74 (s, 2H), 6.72 (d, J = 9.2 Hz, 1 H), 7.08 (m, 1 H), 7.16 (d, J = 7.2 Hz, 1 H), 7.38 (m, 2H), 7.55 - 7.62 (m, 2H), 8.05 (m, 2H), 8.40 (s, 1 H), 8.47 (s, 1 H), 8.92 (bs, 1 H), 9.25 (bs, 1 H |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
1.76 g | With potassium carbonate; In N,N-dimethyl-formamide; at 20℃; | To (1 -ethyl-1 H-pyrazol-3-yl)methanamine (1 g, 7.99 mmol) in DMF (15 ml_) were added 4- fluoro-N-methyl-3-nitrobenzamide (1 .583 g, 7.99 mmol) and K2C03 (638 mg, 4.62 mmol), and the reaction mixture was stirred overnight at room temperature. The reaction was quenched with water (40 ml_) and a solid formed. The resulting mixture was stirred for 30 minutes at room temperature and then filtered. Trituration of the filtered solid from Et20 afforded 4-(((1 -ethyl-1 H-pyrazol-3-yl)methyl)amino)-N-methyl-3-nitrobenzamide (1 .76 g) as a yellow solid. LC-MS (ES) m/z = 304 [M+H]+. NMR (400 MHz, DMSO-d6): delta 1 .36 (t, J = 7.2 Hz, 3H), 2.76 (d, J = 4.6 Hz, 3H), 4.1 1 (q, J = 7.27 Hz, 2H), 4.58 (d, J = 5.6 Hz, 2H), 6.19 (d, J = 2.3 Hz, 1 H), 7.16 (d, J = 9.1 Hz, 1 H), 7.69 (d, J = 2.3 Hz, 1 H), 7.93 - 7.98 (m, 1 H), 8.46 (d, J = 4.6 Hz, 1 H), 8.64 (d, J = 2.0 Hz, 1 H), 8.79 (t, J = 5.5 Hz, 1 H). |
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