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[ CAS No. 52-89-1 ] {[proInfo.proName]}

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Chemical Structure| 52-89-1
Chemical Structure| 52-89-1
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Product Details of [ 52-89-1 ]

CAS No. :52-89-1 MDL No. :MFCD00064553
Formula : C3H8ClNO2S Boiling Point : -
Linear Structure Formula :- InChI Key :IFQSXNOEEPCSLW-DKWTVANSSA-N
M.W : 157.62 Pubchem ID :60960
Synonyms :
Chemical Name :(R)-2-Amino-3-mercaptopropanoic acid hydrochloride

Calculated chemistry of [ 52-89-1 ]

Physicochemical Properties

Num. heavy atoms : 8
Num. arom. heavy atoms : 0
Fraction Csp3 : 0.67
Num. rotatable bonds : 2
Num. H-bond acceptors : 3.0
Num. H-bond donors : 2.0
Molar Refractivity : 35.91
TPSA : 102.12 Ų

Pharmacokinetics

GI absorption : High
BBB permeant : No
P-gp substrate : No
CYP1A2 inhibitor : No
CYP2C19 inhibitor : No
CYP2C9 inhibitor : No
CYP2D6 inhibitor : No
CYP3A4 inhibitor : No
Log Kp (skin permeation) : -8.46 cm/s

Lipophilicity

Log Po/w (iLOGP) : 0.0
Log Po/w (XLOGP3) : -1.69
Log Po/w (WLOGP) : 0.13
Log Po/w (MLOGP) : -2.61
Log Po/w (SILICOS-IT) : -0.69
Consensus Log Po/w : -0.97

Druglikeness

Lipinski : 0.0
Ghose : None
Veber : 0.0
Egan : 0.0
Muegge : 2.0
Bioavailability Score : 0.55

Water Solubility

Log S (ESOL) : 0.38
Solubility : 378.0 mg/ml ; 2.4 mol/l
Class : Highly soluble
Log S (Ali) : 0.06
Solubility : 180.0 mg/ml ; 1.14 mol/l
Class : Highly soluble
Log S (SILICOS-IT) : 0.59
Solubility : 612.0 mg/ml ; 3.88 mol/l
Class : Soluble

Medicinal Chemistry

PAINS : 0.0 alert
Brenk : 1.0 alert
Leadlikeness : 1.0
Synthetic accessibility : 1.85

Safety of [ 52-89-1 ]

Signal Word:Warning Class:N/A
Precautionary Statements:P261-P264-P271-P280-P302+P352-P304+P340-P305+P351+P338-P312-P321-P332+P313-P337+P313-P362-P403+P233-P405-P501 UN#:N/A
Hazard Statements:H315-H319-H335 Packing Group:N/A
GHS Pictogram:

Application In Synthesis of [ 52-89-1 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Upstream synthesis route of [ 52-89-1 ]
  • Downstream synthetic route of [ 52-89-1 ]

[ 52-89-1 ] Synthesis Path-Upstream   1~23

  • 1
  • [ 52-89-1 ]
  • [ 5392-28-9 ]
  • [ 945-24-4 ]
Reference: [1] Journal of Organic Chemistry, 2001, vol. 66, # 15, p. 5146 - 5154
  • 2
  • [ 52-89-1 ]
  • [ 106-96-7 ]
  • [ 3262-64-4 ]
Reference: [1] Bioorganic Chemistry, 1996, vol. 24, # 4, p. 401 - 416
[2] Journal of Organic Chemistry, 1965, vol. 30, p. 895 - 896
[3] Patent: US2009/36534, 2009, A1, . Location in patent: Page/Page column 7
[4] Patent: EP2186512, 2010, A1, . Location in patent: Page/Page column 12
[5] Journal of Organometallic Chemistry, 2016, vol. 806, p. 12 - 21
  • 3
  • [ 52-89-1 ]
  • [ 106-95-6 ]
  • [ 21593-77-1 ]
Reference: [1] Journal of Physical Chemistry B, 2011, vol. 115, # 45, p. 13408 - 13417
[2] Die Pharmazie, 1968, vol. 23, # 8, p. 462 - 467
[3] Journal of Agricultural and Food Chemistry, 2000, vol. 48, # 12, p. 6254 - 6260
[4] Journal of Organic Chemistry, 2004, vol. 69, # 19, p. 6185 - 6201
[5] Patent: US2009/36534, 2009, A1, . Location in patent: Page/Page column 9
[6] Tetrahedron, 2014, vol. 70, # 42, p. 7621 - 7626
  • 4
  • [ 52-89-1 ]
  • [ 100-39-0 ]
  • [ 3054-01-1 ]
YieldReaction ConditionsOperation in experiment
92% With sodium hydroxide In ethanol at 20℃; for 1 h; To a rapidly stirring solution of 2N sodium hydroxide (15 mL) and ethanol (35 mL) was added L-cysteine hydrochloride (1.3 g, 8.2 mmol) and benzyl bromide (0.98 mL, 8.2 mmol). The reaction mixture was neutralized after 1 h to pH 6-7 by careful addition of concentrated hydrochloric acid. The precipitate was filtered and washed successively with water, ethanol and ether to give S-benzylcysteine (7) as a white powder (1.87 g, 92percent), mp 210-212 °C (lit [36].: 215-216 °C).
Reference: [1] European Journal of Medicinal Chemistry, 2012, vol. 55, p. 176 - 187,12
[2] Journal of Pharmaceutical Sciences, 1984, vol. 73, # 4, p. 559 - 561
[3] Organic Preparations and Procedures International, 1991, vol. 23, # 1, p. 93 - 102
  • 5
  • [ 52-89-1 ]
  • [ 100-44-7 ]
  • [ 3054-01-1 ]
Reference: [1] Tetrahedron Letters, 2010, vol. 51, # 46, p. 5977 - 5979
[2] Journal of Physical Chemistry B, 2011, vol. 115, # 45, p. 13408 - 13417
[3] Helvetica Chimica Acta, 1948, vol. 31, p. 737,743
[4] Journal of the Chemical Society, 1960, p. 1390 - 1393
[5] Carbohydrate Polymers, 2014, vol. 117, p. 211 - 214
  • 6
  • [ 52-89-1 ]
  • [ 3054-01-1 ]
Reference: [1] Bulletin of the Chemical Society of Japan, 1996, vol. 69, # 4, p. 1099 - 1106
  • 7
  • [ 76-84-6 ]
  • [ 58632-95-4 ]
  • [ 52-89-1 ]
  • [ 21947-98-8 ]
Reference: [1] Canadian Journal of Chemistry, 1979, vol. 57, p. 1388 - 1396
  • 8
  • [ 76-84-6 ]
  • [ 52-89-1 ]
  • [ 2799-07-7 ]
YieldReaction ConditionsOperation in experiment
98%
Stage #1: for 2 h;
Stage #2: With sodium acetate; sodium hydroxide In diethyl ether; water at 0℃;
Triphenylmethanol (3.3 g, 12.7 mmol) was added to a solution of Cysteine chlorydrate (2 g, 12.7 mmol) in TFA (25 mL) and the mixture was stirred for 2 h. After cooling to 0 °C, NaOH 4N and diethyl ether (40 mL) were added until pH 4-5 and then 10percent sodium acetate aqueous solution was added until pH 5-6. The precipitated obtained was filtered, washed with fresh Et2O and finally dried to obtain the desired product (5 g, 98percent yield).1H NMR (DMSO): δ (ppm) 2.35-2.61 (m, 2H, CH2); 2.85-2.98 (m, 1H, CH); 7.2-7.45 (m, 15H, trityl-H).MALDI-TOF MS: m/z364.7 Da [M + H]+, C22H21NO2S, Mol. Wt.: 363.47.
Reference: [1] European Journal of Medicinal Chemistry, 2012, vol. 50, p. 383 - 392
[2] Chemical Communications, 2013, vol. 49, # 92, p. 10808 - 10810
[3] Journal of the Chemical Society [Section] C: Organic, 1970, p. 2687
[4] Journal of Medicinal Chemistry, 1970, vol. 13, p. 414 - 418
[5] Canadian Journal of Chemistry, 1981, vol. 59, # 2, p. 406 - 421
  • 9
  • [ 52-89-1 ]
  • [ 76-83-5 ]
  • [ 2799-07-7 ]
YieldReaction ConditionsOperation in experiment
89% at 20℃; for 48 h; L-Cysteine hydrochloride (100 g, 0.634 mol) and trityl chloride (270 g, 0.969 mol) were stirred in DMF (400 mL) for 2 days at room temperature. A 10percent sodium acetate solution (3.5 L) was then added dropwise and the white precipitate which formed was filtered and washed with distilled water. Afterward, the residue was stirred in acetone at 50° C. for 30 min after which it was cooled to 0° C. and filtered. The precipitate was washed with a little acetone and diethyl ether and dried in vacuo. S-Trityl-L-cysteine 1b (205 g, 89percent) was obtained as a white powder. 1b: m.p. 192° C. (decomp). 1H NMR (DMSO-d6) δ 2.45 (dd, 1H, J=9 Hz, 12 Hz), 2.58 (dd, 1H, J=4.4 Hz, 12 Hz), 2.91 (m, 1H), 7.22-7.36 (m, 15H); 13C NMR (75.5 MHz, DMSO-d6): δ 33.8, 53.7, 66.4, 127.1, 127.8, 128.1, 128.4, 129.5, 144.5, 168.4. This material was directly used in the next step without further purification.
89% With sodium acetate In N,N-dimethyl-formamide at 20℃; for 48 h; L-Cysteine hydro-chloride (100 g, 0.634 mol) and trityl chloride (270 g, 0.969 mol) were stirred in DMF (400 mL) for 2 days at room temperature. A 10percent sodium acetate solution (3.5 L) was then added dropwise and the white precipitate which formed was filtered and washed with distilled water. Afterward, the residue was stirred in acetone at 50 0C for 30 min after which it was cooled to 00C and filtered. The precipitate was washed with a little acetone and diethyl ether and dried in vacuo. S-Trityl-L-cysteine Ic (205 g, 89percent) was obtained as a white powder. Ic: m.p. 192 °C (decomp) ; 1H NMR (300 MHz, DMSCW5) δ 2.45 (dd, IH, J= 9 Hz, 12 Hz), 2.58 (dd, IH, J= 4.4 Hz, 12 Hz), 2.91 (m, IH), 7.22-7.36 (m, 15H); 13C NMR (75.5 MHz, DMSO- d6): δ 33.8, 53.7, 66.4, 127.1, 127.8, 128.1, 128.4, 129.5, 144.5, 168.4. This material was directly used in the next step without further purification.
78% at 20℃; for 48 h; Preparation 75: Synthesis of (R)-3-amino-4-tritylsulfanyl-butyric acid methyl ester hydrochloride; (Step 1); L-cysteine hydrochloride (5Og, 284.7mmol) was dissolved in N,N- dimethylformamide (200ml). Trityl chloride (119g, 427.0mmol) was added thereto, and the mixture was stirred for 48 h at room temperature. After completion of the reaction, 10percent sodium acetate (1.5L) was added. The mixture was filtered to give a solid, which was then added to acetone (1.5L), and stirred for 30 min at 50 °C . The insoluble solid was filtered, and dried to give a trityl compound (80g, Yield 78percent).
77% at 20℃; for 48 h; Synthetic Example 1; (R)-3-Mercapto-2-(5-methyl-4-phenyl-thiazoI-2-yIamino)-propionic acid; Step 1 : S-Trityl-L-cysteine falso known as (R)-2-amino-3- (tritylsulfanyl)propanoic acid); L-Cysteine hydrochloride (5.0 g, 31.7 mmol) and trityl chloride (13.5 g, 48.4 mmol) were stirred in DMF (20 ml) for 48 h at room temperature. A 10percent NaOAc solution (175 mL) was then added, and the precipitate was filtered and washed with water. Afterward, the residue was suspended in acetone and stirred at 50 °C for 30 min, then cooled and filtered. The residue was washed with acetone (cold) and diethyl ether. After drying 8.86 g (77percent) S-trityl-L-cysteine was obtained.

Reference: [1] Journal of Medicinal Chemistry, 2001, vol. 44, # 4, p. 619 - 626
[2] Organic Letters, 2005, vol. 7, # 13, p. 2615 - 2618
[3] Patent: US7829709, 2010, B1, . Location in patent: Page/Page column 19-20
[4] Patent: WO2009/100431, 2009, A1, . Location in patent: Page/Page column 28
[5] Patent: WO2009/82152, 2009, A2, . Location in patent: Page/Page column 214
[6] Patent: WO2009/151744, 2009, A1, . Location in patent: Page/Page column 93
[7] Chemical Communications, 2009, # 4, p. 407 - 409
[8] Acta Chemica Scandinavica (1947-1973), 1959, vol. 13, p. 383
[9] Journal of the American Chemical Society, 1962, vol. 84, p. 3887 - 3897
  • 10
  • [ 52-89-1 ]
  • [ 76-83-5 ]
  • [ 2799-07-7 ]
  • [ 27686-50-6 ]
Reference: [1] Bulletin de la Societe Chimique de France, 1956, p. 698
  • 11
  • [ 52-89-1 ]
  • [ 1625-72-5 ]
Reference: [1] Journal of the American Chemical Society, 1956, vol. 78, p. 4482,4486
  • 12
  • [ 24424-99-5 ]
  • [ 52-89-1 ]
  • [ 20887-95-0 ]
Reference: [1] Angewandte Chemie - International Edition, 2015, vol. 54, # 35, p. 10206 - 10210[2] Angew. Chem., 2015, vol. 127, # 35, p. 10344 - 10348,5
  • 13
  • [ 2519-89-3 ]
  • [ 52-89-1 ]
Reference: [1] Tetrahedron Letters, 2008, vol. 49, # 46, p. 6553 - 6555
  • 14
  • [ 120033-48-9 ]
  • [ 52-89-1 ]
  • [ 120033-46-7 ]
Reference: [1] Journal of Organic Chemistry, 1989, vol. 54, # 12, p. 2940 - 2949
  • 15
  • [ 1447695-69-3 ]
  • [ 52-89-1 ]
  • [ 17498-50-9 ]
  • [ 17694-98-3 ]
  • [ 60143-52-4 ]
Reference: [1] Journal of Natural Products, 2013, vol. 76, # 7, p. 1388 - 1391
  • 16
  • [ 62982-12-1 ]
  • [ 1620-30-0 ]
  • [ 52-89-1 ]
Reference: [1] Journal of the Chemical Society, Perkin Transactions 1: Organic and Bio-Organic Chemistry (1972-1999), 1981, p. 522 - 528
  • 17
  • [ 64-17-5 ]
  • [ 52-89-1 ]
  • [ 868-59-7 ]
Reference: [1] Tetrahedron Asymmetry, 2000, vol. 11, # 21, p. 4255 - 4261
  • 18
  • [ 67-56-1 ]
  • [ 52-89-1 ]
  • [ 18598-63-5 ]
YieldReaction ConditionsOperation in experiment
85.9%
Stage #1: at 20℃; for 1 h; Cooling with ice; Inert atmosphere
Stage #2: at 20℃; for 4 h; Reflux
Under ice-bath condition, 3 ml SOCl2 was added dropwise to 35 ml methanol in the presence of nitrogen atmosphere. Afterward, the solution was stirred at room temperature for 1 h, then 1 g Cys·HCl·H2O was added in batches to the solution. And the mixture solution reacted at room temperature for 3 h, and then refluxed for 1 h. Removing the volatile component and solvent, the residue was recrystallized with CH3OH-CH2Cl2, and 0.84 g white solid was obtained with 85.9percent yield. IR (KBr, cm-1): 3040.4 (s, NH2), 1709.7 (s, C=O), 2580 (w, SH).
1H NMR (D2O, TMS, ppm); δ 4.453 (t, 1H, CH, J = 5.2 Hz), 3.871 (s, 3H, CH3), 3.164 (t, 2H, CH2, J = 6.4 Hz). Elemental Anal. Calcd for C4H10NO2SCl: C, 27.99; H, 5.87; N, 8.16percent. Found: C, 28.11; H, 6.01; N, 8.08percent.
Reference: [1] European Journal of Medicinal Chemistry, 2014, vol. 74, p. 199 - 215
[2] Journal of Organic Chemistry, 2013, vol. 78, # 9, p. 4270 - 4277
[3] Tetrahedron Asymmetry, 2000, vol. 11, # 21, p. 4255 - 4261
[4] Journal of the American Chemical Society, 2008, vol. 130, # 15, p. 5052 - 5053
[5] European Journal of Medicinal Chemistry, 2012, vol. 55, p. 176 - 187,12
  • 19
  • [ 52-89-1 ]
  • [ 1885-14-9 ]
  • [ 19771-63-2 ]
Reference: [1] Chemistry - A European Journal, 2004, vol. 10, # 23, p. 6102 - 6110
[2] Patent: EP1462444, 2004, A1, . Location in patent: Page 23
[3] European Journal of Pharmaceutics and Biopharmaceutics, 2016, vol. 103, p. 62 - 70
  • 20
  • [ 52-89-1 ]
  • [ 75-65-0 ]
  • [ 2481-09-6 ]
Reference: [1] Journal of Organic Chemistry, 1981, vol. 46, # 9, p. 1868 - 1873
  • 21
  • [ 877674-77-6 ]
  • [ 52-89-1 ]
  • [ 82009-34-5 ]
YieldReaction ConditionsOperation in experiment
78%
Stage #1: With sodium hydroxide In water at 5℃; for 0.166667 h;
Stage #2: at 45 - 50℃; for 0.166667 h;
At 5° C ,10.5 g of sodium hydroxide was added to 65 g of water,Stirring for 10min,10 g of the compound (Z) -7-chloro-2 ((S) -2,2-dimethylcyclopropylcarboxamido) -2-heptenoic acid represented by the formula (V)Stirring for 10 min;At 45° C ,8 g of cysteine hydrochloride monohydrate was added, stirred for 10 min,The reaction begins at 50 ° C,(Z) -7-chloro-2 ((S) -2,2-dimethylcyclopropylcarboxamido) -2-heptenoic acid in the resulting reaction solution by HPLC was less than 5 percent To complete the reaction;After cooling to 20° C ,To the solution was added 223 g of water,Stir,To the solution was slowly added 6M hydrochloric acid solution,Adjust the pH to 2. The obtained solution was added to the Φ45 * 4.0m macroporous adsorption resin column HZ-816, eluted with water, and the conductivity of the collected liquid was less than 100us / cm, and then the aqueous solution was eluted with an aqueous solution of ethanol. The ethanol and water The mass ratio was 15:85 and the elution temperature was 25 ° C. (Z) -7-chloro-2 - ((S) -2,2-dimethylcyclopropylcarboxyl) was added to the above raw material under reduced pressure to collect the material liquid having a conductivity of 100 μ / cm or more 2-heptenoic acid) to obtain the compound of formula (VI). After the addition of 200 g of acetone in the cilastatin, the seeds were incubated at -30 ° C for 6 h, filtered and dried The water content in the obtained cilastatin was less than 3percent, and 7.8 g of the pale yellow cilastatin was obtained. The purity was 99.4percent by HPLC and the yield was 78percent.
Reference: [1] Patent: CN106518741, 2017, A, . Location in patent: Paragraph 0087; 0088; 0092; 0093; 0097; 0098; 0102-0163
[2] Patent: US7371897, 2008, B1, . Location in patent: Page/Page column 7
[3] Patent: US2009/143614, 2009, A1, . Location in patent: Page/Page column 4
[4] Patent: US2009/143614, 2009, A1, . Location in patent: Page/Page column 4
[5] Patent: WO2011/80648, 2011, A1, . Location in patent: Page/Page column 11
[6] Patent: EP2402312, 2012, A1, . Location in patent: Page/Page column 6
[7] Patent: CN107522642, 2017, A, . Location in patent: Paragraph 0036; 0041
  • 22
  • [ 52-89-1 ]
  • [ 84348-37-8 ]
  • [ 401564-36-1 ]
Reference: [1] Patent: CN106349237, 2017, A, . Location in patent: Paragraph 0043; 0044; 0052
  • 23
  • [ 52-89-1 ]
  • [ 57617-09-1 ]
  • [ 75498-96-3 ]
YieldReaction ConditionsOperation in experiment
97.9% With ethylenediaminetetraacetic acid; sodium thiosulfate In water at 50℃; 433.1 g of 7β-chloroacetamido-7a-methoxy-3- (1-methyl-1H-tetrazole-5-thiomethyl) -3-cephem-4- Cysteine hydrochloride was added to 2 L of water, and then 30 g of EDTA and 412 g of sodium thiosulfate were added thereto. The mixture was reacted at 50 ° C and the reaction was complete by TLC. After cooling to room temperature, a mixed solution of 1500 ml of ethanol and 500 ml of acetone was added, Filtration and drying gave 530 g of cefminox sodium in a yield of 97.9percent. The purity was found to be 99.5percent by HPLC.
Reference: [1] Patent: CN105924456, 2016, A, . Location in patent: Paragraph 0033; 0035
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