 
                                
                                 
                                
                                Structure of 660432-43-9
 
                                 
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                            The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
 
                
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| CAS No. : | 660432-43-9 | 
| Formula : | C7H6FNO3 | 
| M.W : | 171.13 | 
| SMILES Code : | OCC1=CC=C([N+]([O-])=O)C=C1F | 
| MDL No. : | MFCD11110168 | 
| InChI Key : | XYGZVFTWIGGORD-UHFFFAOYSA-N | 
| Pubchem ID : | 17981733 | 
| GHS Pictogram: |   | 
| Signal Word: | Warning | 
| Hazard Statements: | H315-H319-H335 | 
| Precautionary Statements: | P261-P305+P351+P338 | 
| Num. heavy atoms | 12 | 
| Num. arom. heavy atoms | 6 | 
| Fraction Csp3 | 0.14 | 
| Num. rotatable bonds | 2 | 
| Num. H-bond acceptors | 4.0 | 
| Num. H-bond donors | 1.0 | 
| Molar Refractivity | 41.35 | 
| TPSA ? Topological Polar Surface Area: Calculated from  | 66.05 Ų | 
| Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from  | 1.33 | 
| Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by  | 0.97 | 
| Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from  | 1.49 | 
| Log Po/w (MLOGP)? MLOGP: Topological method implemented from  | 0.78 | 
| Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by  | -0.05 | 
| Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions | 0.9 | 
| Log S (ESOL):? ESOL: Topological method implemented from  | -1.75 | 
| Solubility | 3.04 mg/ml ; 0.0178 mol/l | 
| Class? Solubility class: Log S scale  | Very soluble | 
| Log S (Ali)? Ali: Topological method implemented from  | -1.94 | 
| Solubility | 1.94 mg/ml ; 0.0114 mol/l | 
| Class? Solubility class: Log S scale  | Very soluble | 
| Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by  | -1.88 | 
| Solubility | 2.25 mg/ml ; 0.0131 mol/l | 
| Class? Solubility class: Log S scale  | Soluble | 
| GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg | High | 
| BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg | Yes | 
| P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set)  | No | 
| CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) | No | 
| CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) | No | 
| CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) | No | 
| CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) | No | 
| CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) | No | 
| Log Kp (skin permeation)? Skin permeation: QSPR model implemented from  | -6.66 cm/s | 
| Lipinski? Lipinski (Pfizer) filter: implemented from  | 0.0 | 
| Ghose? Ghose filter: implemented from  | None | 
| Veber? Veber (GSK) filter: implemented from  | 0.0 | 
| Egan? Egan (Pharmacia) filter: implemented from  | 0.0 | 
| Muegge? Muegge (Bayer) filter: implemented from  | 1.0 | 
| Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat  | 0.55 | 
| PAINS? Pan Assay Interference Structures: implemented from  | 0.0 alert | 
| Brenk? Structural Alert: implemented from  | 2.0 alert: heavy_metal | 
| Leadlikeness? Leadlikeness: implemented from  | No; 1 violation:MW<1.0 | 
| Synthetic accessibility? Synthetic accessibility score:  from 1 (very easy) to 10 (very difficult) | 1.65 | 
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

| Yield | Reaction Conditions | Operation in experiment | 
|---|---|---|
| 30% | With manganese(IV) oxide; In dichloromethane; at 20℃; | Add borane-tetrahydrofuran complex (16.21 [ML,] [1] M) to a mixture of 2-fluoro-4- nitro-benzoic acid (1.2 g) and tetrahydrofuran (10 [ML)] at [0C.] Heat at [80C] for 3 hours. Cool at room temperature and add 1 N aqueous hydrochloric acid (20 mL) and extract with ethyl acetate. Wash with saturated aqueous sodium bicarbonate and dry the remaining organic phase over sodium sulfate and concentrate under reduced pressure to provide (0.91 g, 83%) of an oil. Add (2-fluoro-4-nitro-phenyl) -methanol (0.91 g) to a mixture of dioxide manganese (1.1 g) in 20 ml of dichloromethane. Stir at room temperature overnight and filter over [CELITE&COMMAT;. ] Concentrate under reduced pressure to provide (0.27 g, 30%) of the title compound as an oil. | 
| With sulfur trioxide pyridine complex; triethylamine; In dimethyl sulfoxide; at 20℃; for 2h; | 43.3 g of 2-fluoro-4-nitrobenzoic acid was dissolved in 600 ml of dimethylformamide, and 1,1'-carbodiimide was added to it, and stirred at room temperature for 2 hours. 11.1 g of sodium borohydride was added thereto, and further stirred for 30 minutes. Aqueous saturated ammonium chloride solution was added to it, 800 ml of water was added thereto, extracted wit 1.2 liters of ethyl acetate, and the organic layer was washed with saturated saline water. The solvent was evaporated away under reduced pressure, the residue was again diluted with ethyl acetate, and the organic layer was washed with water and saturated saline water. This was dried with anhydrous sodium sulfate, and the solvent was evaporated away to obtain 32.7 g of a brown oil. The obtained oil was dissolved in 200 ml of dimethyl sulfoxide and 60 ml of triethylamine, and 88.7 g of sulfur trioxide/pyridine complex was gradually added to it, and stirred at room temperature for 2 hours. This was diluted with ethyl acetate, and the organic layer was washed with water, aqueous 0.1 N hydrochloric acid solution and saturated saline water. The solvent was evaporated away under reduced pressure, and the residue was purified through silica gel column chromatography (developing solvent: hexane/ethyl acetate) and through crystallization (methanol/diethyl ether) to obtain 14.0 g of the entitled compound as an orange solid. | 
| Yield | Reaction Conditions | Operation in experiment | 
|---|---|---|
| With triphenylphosphine; In pyridine; | Example 10 Uridine 5'-monophosphate (2-fluoro-4-nitrobenzyl)ester A solution of 2',3'- O-isopropylidene-uridine 5'-monophosphoric acid (0.2 mmol) and <strong>[660432-43-9]2-fluoro-4-nitrobenzyl alcohol</strong> (0.4 mmol) in pyridine (5 mL) is treated with triphenylphosphine (6 mmol) and diethylazodicarboxylate (4 mmol) 7 hours at 28 C. The solvents are removed in vacuo and the residue chromatographed on silica gel with methanol-chloroform as eluent, to isolate 2',3'-O-isopropylidene-uridine 5'-monophosphate (2-fluoro-4-nitrobenzyl)ester. This compound is treated with methanolic HCl 20 minutes at 28 C., and the solvent removed in vacuo to afford the title compound. | 
| Yield | Reaction Conditions | Operation in experiment | 
|---|---|---|
| 43.3 g of 2-fluoro-4-nitrobenzoic acid was dissolved in 600 ml of dimethylformamide, and 1,1'-carbodiimide was added to it, and stirred at room temperature for 2 hours. 11.1 g of sodium borohydride was added thereto, and further stirred for 30 minutes. Aqueous saturated ammonium chloride solution was added to it, 800 ml of water was added thereto, extracted wit 1.2 liters of ethyl acetate, and the organic layer was washed with saturated saline water. The solvent was evaporated away under reduced pressure, the residue was again diluted with ethyl acetate, and the organic layer was washed with water and saturated saline water. This was dried with anhydrous sodium sulfate, and the solvent was evaporated away to obtain 32.7 g of a brown oil. The obtained oil was dissolved in 200 ml of dimethyl sulfoxide and 60 ml of triethylamine, and 88.7 g of sulfur trioxide/pyridine complex was gradually added to it, and stirred at room temperature for 2 hours. This was diluted with ethyl acetate, and the organic layer was washed with water, aqueous 0.1 N hydrochloric acid solution and saturated saline water. The solvent was evaporated away under reduced pressure, and the residue was purified through silica gel column chromatography (developing solvent: hexane/ethyl acetate) and through crystallization (methanol/diethyl ether) to obtain 14.0 g of the entitled compound as an orange solid. | ||
| With lithium aluminium tetrahydride; In diethyl ether; at 0℃; for 0.75h;Reflux; | General procedure: To a stirred suspension of LiAlH4 (3.0mmol) in ether was added dropwise a solution of 21 in ether at 0C over 15min. The mixture was refluxed for 30min, then the reaction cooled to 0C and quenched with 1N HCl. The precipitate was filtered off and washed with ether. The combined filtrate was dried over MgSO4, filtered and concentrated in vacuo. The residue was puried by column chromatography on silica gel to afford the desired product. | 
| Yield | Reaction Conditions | Operation in experiment | 
|---|---|---|
| 39.2% | With sodium hydroxide; In tetrahydrofuran; at 5 - 20℃; for 4h; | To a mixture of 4-nitrobenzyl alcohol or <strong>[660432-43-9]4-nitro-2-fluorobenzyl alcohol</strong> (1.1 eq) in THF and aq. NaOH solution (5 M, 1.5 eq), 4-methylbenzenesulfonyl chloride (1.0 eq) in THF was added dropwise over 1 h at 5 ºC. The reaction was stirred at r.t. for another 3 h. The precipitate was filtered, washed thoroughly with water, dried, and then recrystallized from methanol to give the desired tosylate. 4-Nitro-2-fluorobenzyl tosylate: 41.0 mg (39.2% yield) was obtained from 55 mg of <strong>[660432-43-9]4-nitro-2-fluorobenzyl alcohol</strong>. LC-MS (ESI+, m/z): 325.6 [M+H]+ | 
 [ 660432-43-9 ]
                                                    
                                                    [ 660432-43-9 ]

| Yield | Reaction Conditions | Operation in experiment | 
|---|---|---|
| 90.6% | In tetrahydrofuran; at 20℃; for 2h; | Carbonyldiimidazole (CDI, 1.1 eq) was added to a solution of 4-nitrobenzyl alcohol or <strong>[660432-43-9]4-nitro-2-fluorobenzyl alcohol</strong> (1.0 eq) in THF (10 mL), and the mixture was stirred at r.t. for 2 h before quenching with cold H2O (10 mL). After the solvent was removed, the residue was extracted with CH2Cl2 (3×10 mL) and the combined organic layer was washed with H2O and brine, dried over MgSO4, concentrated in vacuo to afford the desired 4-nitrobenzyloxycarbonyl imidazole as a colorless solid. 4-Nitro-2-fluorobenzyloxycarbonyl imidazole: 421 mg (90.6% yield) was obtained from 300 mg of <strong>[660432-43-9]4-nitro-2-fluorobenzyl alcohol</strong>. LC-MS (ESI+, m/z): 266.0 [M+H]+ | 
| Yield | Reaction Conditions | Operation in experiment | 
|---|---|---|
| 94% | With methanol; sodium tetrahydroborate; at 23℃; for 4h; | Step 1 : To a stirred solution of methyl 2-fluoro-4-nitrobenzoate (10.0 g, 49.7 mmol, 1 eq.) in methanol (100 mL) was added sodium borohydride (9.40 g, 248.7 mmol, 5 eq.) at RT and stirred for 4h. The methanol was evaporated and the residue was diluted with ethyl acetate (50 mL x 2) washed with water (50 mL) and brine (50 mL). The ethyl acetate layer was dried over Na2S04, evaporated under vacuum to get (2-fluoro-4-nitrophenyl)methanol (8 g, 94%, off-white solid; TLC system: EtOAc/PE (3:7), Rf: 0.30). | 
| 94% | With methanol; sodium tetrahydroborate; at 23℃; for 4h; | Step 1 : To a stirred solution of methyl 2-fluoro-4-nitrobenzoate (10.0 g, 49.7 mmol, 1 eq.) in methanol (100 mL) was added sodium borohydride (9.40 g, 248.7 mmol, 5 eq.) at RT and stirred for 4h. The methanol was evaporated and the residue was diluted with ethyl acetate (50 mL x 2) washed with water (50 mL) and brine (50 mL). The ethyl acetate layer was dried over Na2SO4, evaporated under vacuum to get (2-fluoro-4-nitrophenyl)methanol (8 g, 94%, off-white solid; TLC system: EtOAc/PE (3:7), Rf: 0.30). | 
| 3.6 g | With methanol; sodium tetrahydroborate; at 20℃; for 4.5h; | Into a 500-mL round-bottom flask, was placed methyl 2-fluoro-4-nitrobenzoate (10 g, 50.2 mmol) in methanol (100 mL). This was followed by the addition of NaBH4 (9.5 g, 251 mmol) in portions over 30 mm. The resulting solution was stirred for 4 h at RT. The resulting solution was diluted with 400 mL of ethyl acetate. The resulting mixture was washed with 200 mL ofwater and 200 mL of brine. The organic layer was dried over anhydrous sodium sulfate andthen concentrated. This resulted in 3.6 g of the title compound as an off white solid. MS-ESI:172 (M+1). | 
| Yield | Reaction Conditions | Operation in experiment | 
|---|---|---|
| 48% | With palladium 10% on activated carbon; hydrogen; In ethyl acetate; at 23℃; for 6h; | Step 2: To a stirred solution of <strong>[660432-43-9](2-fluoro-4-nitrophenyl)methanol</strong> (3.0 g, 1 .0 eq.) in EtOAc (30 mL) was added 10% Pd-C and the reaction mixture was stirred under H2 gas balloon at RT for 6 h. The reaction mixture was passed through a celite pad and the solvent evaporated. The residue was purified by neutral alumina column using PE/EtOAc (3:2) as eluent to get (4-amino-2-fluorophenyl)methanol (1 .1 g, 48%) as a solid; TLC system: EtOAc/PE (1 :1 ), Rf: 0.3). | 
| 48% | With palladium 10% on activated carbon; hydrogen; In ethyl acetate; at 23℃; for 6h; | Step 2: To a stirred solution of <strong>[660432-43-9](2-fluoro-4-nitrophenyl)methanol</strong> (3.0 g, 1 .0 eq.) in EtOAc (30 mL) was added 10% Pd-C and the reaction mixture was stirred under H2 gas balloon at RT for 6 h. The reaction mixture was passed through a celite pad and the solvent evaporated. The residue was purified by neutral alumina column using PE/EtOAc (3:2) as eluent to get (4-amino-2-fluorophenyl)methanol (1 .1 g, 48%) as a solid; TLC system: EtOAc/PE (1 :1 ), Rf: 0.3). | 
| With palladium 10% on activated carbon; hydrogen; In tetrahydrofuran; methanol; at 20℃; for 2h; | General procedure: To a solution of nitro compound (1.0mmol) in MeOH/THF (1:1) was added 10% Pd/C and charged with hydrogen gas. The mixture was stirred for 2hat room temperature. After completion, the mixture was filtered through Celite and the filtrate was concentrated in vacuo. The residue was puried by column chromatography on silica gel to afford the desired product. | 
| Yield | Reaction Conditions | Operation in experiment | 
|---|---|---|
| 85% | With N-Bromosuccinimide; triphenylphosphine; In dichloromethane; at 0 - 23℃; for 2h; | Step 2: To a cooled (0 C) and stirred solution of DCM (100 mL) containing <strong>[660432-43-9](2-fluoro-4-nitrophenyl)methanol</strong> (9 g, 52.6 mmol, 1 eq), triphenylphosphine (16.5 g, 63.1 mmol, 1 .2 eq) was added followed by addition of NBS (1 1 .24 g, 63.1 mmol, 1 .2 eq), the mixture was allowed to warm to RT and stirred for 2 h. The DCM was evaporated under reduced pressure and the residue was purified by CC using PE/EtOAc (9:1 ) as eluent to get l -(bromomethyl)-2-fluoro-4-nitrobenzene (10.50 g, 85%; TLC system: PE/EtOAc (7:3), Rf: 0.6). | 
| Yield | Reaction Conditions | Operation in experiment | 
|---|---|---|
| 80% | With toluene-4-sulfonic acid; In dichloromethane; at 20℃; for 16h; | [0484] To a solution of <strong>[660432-43-9](2-fluoro-4-nitrophenyl)methanol</strong> (755 mg, 4.42 mmol) in 10 mL ofDCM was added TsOH (100 mg, 0.13 mmol) and DHP (408 mg, 4.86 mmol). After stirring atRT for 16 hr, the mixture was concentrated. The residue was partitioned between 100 mL of EAand 100 mL of brine. The combined organic layers were washed with brine (100 mL x 2), driedover Na2S04, concentrated and purified by chromatography column on silica gel (elution withPE/EA) to afford 900 mg (80%) of 2-(2-fluoro-4-nitrobenzyloxy)-tetrahydro-2H-pyran as acolorless oil. 1H NMR (400 MHz, DMSO-d6) 8 8.34 (dd, J = 3.0, 6.2 Hz, IH), 8.26-8.30 (m,IH), 7.53 (t, J = 9.2 Hz, IH), 4.82-4.76 (m, 2H), 4.62 (d, J = 12.0 Hz, IH), 3.80-3.74 (m, IH),3.52-3.47 (m, IH), 1.76-1.64 (m, 2H) and 1.58-1.45 (m, 4H). | 
| 80% | With toluene-4-sulfonic acid; In dichloromethane; at 20℃; for 16h; | To a solution of <strong>[660432-43-9](2-fluoro-4-nitrophenyl)methanol</strong> (755 mg, 4.42 mmol) in DCM (10 mL),Added to TsOH (100 mg, 0.13 mmol)And DHP (408 mg, 4.86 mmol).After stirring at room temperature for 16 hours, the mixture was concentrated.The residue was partitioned between EA (100 mL) and saturated brine (100 mL).The organic phases were combined, washed with saturated brine (100 mL×2), dried over Na 2 SO 4 , concentrated, and purified on a tannin extract column (PE/EA elution).2-(2-Fluoro-4-nitrobenzyloxy)-tetrahydro-2H-pyran (900 mg, 80%) was obtained as a colorless oil. | 
| Yield | Reaction Conditions | Operation in experiment | 
|---|---|---|
| 99% | With sodium tetrahydroborate; In methanol; at 20℃; for 0.25h; | To a solution of 2-fluoro-4-nitrobenzaldehyde (1.0 g, 5.92 mmol) in CH3OH (10 mL),NaBH4 (814 mg, 22 mmol) was added.After stirring at room temperature for 15 minutes, the mixture was concentrated.The residue was partitioned between EA (100 mL) and saturated brine (100 mL). The combined organic phases were washed with saturated brine (100 mL x 2) and dried over Na2SO4.Concentrate to give a red solid (2-fluoro-4-nitrophenyl)methanol (1.0 g, 99%). | 
| 1 g | With sodium tetrahydroborate; In methanol; at 20℃; for 0.25h; | [0482] To a solution of 2-fluoro-4-nitrobenzaldehyde (1.0 g, 5.92 mmol) in CH30H (10 mL)was added NaBH4 (814 mg, 22 mmol). After stirring at RT for 15 min, the mixture wasconcentrated. The residue was partitioned between 100 mL of EA and 100 mL of brine. Thecombined organic layers were washed with brine (100 mL x 2), dried over Na2S04, andconcentrated to afford 1.0 g of (2-fluoro-4-nitrophenyl) methanol (99%) as a red solid. MS (ESI)m/e [M+It 172.0. | 
| Yield | Reaction Conditions | Operation in experiment | 
|---|---|---|
| 0.76 g | With caesium carbonate; In tetrahydrofuran; N,N-dimethyl-formamide; for 18h; | Reference Example 8: Synthesis of 3-fluoro-4-(methoxymethyl)aniline 5.71 g of cesium carbonate and 3.64 mL iodomethane were added to a mixture solution of 1.0 g of <strong>[660432-43-9](2-fluoro-4-nitrophenyl)methanol</strong> in 20 mL of THF and DMF (1:1), and the mixture was stirred for 18 hours. The resulting mixture was dissolved in ethyl acetate, washed with water, and dried over anhydrous magnesium sulfate, followed by filtration and concentration. The obtained residue was purified by silica gel column chromatography (hexane-ethyl acetate), and the reaction mixture was concentrated, thereby obtaining 0.76 g of 2-fluoro-1-(methoxymethyl)-4-nitrobenzene. Subsequently, 0.76 g of 2-fluoro-1-(methoxymethyl)-4-nitrobenzene was dissolved in 20 mL of ethanol, and 400 mg of palladium/carbon (palladium 10%) was added thereto, followed by stirring in a hydrogen atmosphere for 18 hours. The insoluble matter was filtered, and the filtrate was concentrated. The obtained residue was concentrated, thereby obtaining 567 mg of the title compound. Physical Properties: m/z [M+H]+ 156.0. | 
| 2.1 g | With potassium hydroxide; In dimethyl sulfoxide; at 20℃; | Into a 50-mL round-bottom flask, was placed <strong>[660432-43-9](2-fluoro-4-nitrophenyl)methanol</strong> (3.6 g, 21.0mmol) in DMSO (10 mL). To the stirred solution was added KOH (4.72 g, 84.2 mmol) inportions and Mel (11.9 g, 84.1 mmol) dropwise at RT. The resulting solution was stirred for overnight at RT. The reaction was then quenched by the addition of water. The resulting solution was extracted with 200 mL of dichloromethane. The organic layers were combined and washed with 200 mL of brine. Then the organic layer was dried over anhydrous sodiumsulfate and concentrated. The residue was eluted from silica gel with ethyl acetate/petroleum ether (1:1) to give the title compound as 2.1 g yellow solid. MS-ESI: 186 (M+1). | 
 [ 660432-43-9 ]
                                                    
                                                    [ 660432-43-9 ]

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