Structure of 12-Amino-1-dodecanol
CAS No.: 67107-87-3
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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| CAS No. : | 67107-87-3 |
| Formula : | C12H27NO |
| M.W : | 201.35 |
| SMILES Code : | OCCCCCCCCCCCCN |
| MDL No. : | MFCD01851111 |
| InChI Key : | IIWXYWWVCBRBCJ-UHFFFAOYSA-N |
| Pubchem ID : | 5182020 |
| GHS Pictogram: |
|
| Signal Word: | Warning |
| Hazard Statements: | H315-H319 |
| Precautionary Statements: | P264-P280-P302+P352+P332+P313+P362+P364-P305+P351+P338+P337+P313 |
| Num. heavy atoms | 14 |
| Num. arom. heavy atoms | 0 |
| Fraction Csp3 | 1.0 |
| Num. rotatable bonds | 11 |
| Num. H-bond acceptors | 2.0 |
| Num. H-bond donors | 2.0 |
| Molar Refractivity | 63.67 |
| TPSA ? Topological Polar Surface Area: Calculated from |
46.25 Ų |
| Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
3.07 |
| Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
3.81 |
| Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
2.84 |
| Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
2.49 |
| Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
3.11 |
| Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
3.06 |
| Log S (ESOL):? ESOL: Topological method implemented from |
-2.76 |
| Solubility | 0.348 mg/ml ; 0.00173 mol/l |
| Class? Solubility class: Log S scale |
Soluble |
| Log S (Ali)? Ali: Topological method implemented from |
-4.48 |
| Solubility | 0.00673 mg/ml ; 0.0000334 mol/l |
| Class? Solubility class: Log S scale |
Moderately soluble |
| Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-3.81 |
| Solubility | 0.0313 mg/ml ; 0.000155 mol/l |
| Class? Solubility class: Log S scale |
Soluble |
| GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
| BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
| P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
| CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
| CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
| CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
| CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
| CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
| Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-4.82 cm/s |
| Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
| Ghose? Ghose filter: implemented from |
None |
| Veber? Veber (GSK) filter: implemented from |
1.0 |
| Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
| Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
| Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
| PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
| Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
| Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<3.0 |
| Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.75 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 98% | With sodium hydroxide; In water; tert-butyl alcohol; for 18h;Inert atmosphere; | To a mixture of NaOH (43 mg, 1.1 mmol), in water/tert-BuOH 1:1 (1.0 mL) was added di-tert-butyl dicarbonate (225 muL, 1.05 mmol) and <strong>[67107-87-3]12-amino-dodecan-1-ol</strong> (199 mg, 1.00 mmol). After the viscous mixture was stirred for 18 h, 0.3 M HCl solution (1.5 mL) was added and the aqueous layer was extracted with ethyl acetate (3 × 30 mL). The combined organic layers were washed with brine (5 mL) and dried over MgSO4. The solvent was removed under reduced pressure and 294 mg (98%) of the product was obtained as white solid. Mp 75 C. 1H NMR (300 MHz, CDCl3) delta 4.51 (s, 1H, NH), 3.66 (dd, J = 11.1, 6.5 Hz, 2H, NHCH2), 3.11 (dd, J = 13.2, 6.6 Hz, 2H, CH2OH), 1.73-1.16 (m, 21H, (CH2)10, OH), 1.46 (s, 9H, OtBu). 13C NMR (151 MHz, CDCl3) delta 155.94, 78.96, 63.03, 40.60, 32.77, 30.03, 29.53, 29.48, 29.48, 29.37, 29.23, 28.40, 26.77, 25.69. IR (film) nu = 3368 cm-1, 2919, 2851, 1685, 1653, 1558, 1523, 1481, 1469, 1457, 1443, 1389, 1364, 1337, 1288, 1266, 1243, 1225, 1173, 1142, 1059, 1027, 994, 978, 867, 781, 741, 720, 679, 661. HRMS (ESI) calcd for C17H35NNaO3 [M+Na]+ 324.2515, found 324.2509. |
| In tetrahydrofuran; at 50℃; for 3h;Inert atmosphere; | General procedure: To a solution of an aminoalcohol (66.6 mmol) in THF (67 mL) was added di-tert-butyl dicarbonate (15.3 g, 66.6 mmol) at 50 C under an argon atmosphere. After 3 h stirring, the solvent was removed in vacuo. The crude product was purified by silica gel column chromatography (EtOAc / hexane, 50:50) to give a N-Boc aminoalcohol. Iodine (12.5 g, 49.3 mmol) was added to a solution of N-Boc aminoalcohol (17.6 mmol), PPh3 (6.92 g, 26.3 mmol) and imidazole (1.79 g, 26.3 mmol) in CH2Cl2 (98 mL) at 0 C. The mixture was stirred at room temperature for 1 h under an argon atmosphere. The reaction mixture was quenched with saturated aqueous Na2S2O3, diluted with CH2Cl2 and extracted with CH2Cl2. The organic layer was washed with H2O and brine, dried over MgSO4, filtered and concentrated in vacuo. The residue was purified by silica gel column chromatography (EtOAc/hexane, 10:90) to afford a N-BOC aminoalkyliodide. To a solution of NaH (60% in oil, 0.673 g, 16.8 mmol) in DMF (15.3 mL) was added dropwise a solution of N-hydroxyphthalimide (2.49 mmol) in DMF (10 mL) at 0 C under an argon atmosphere. After 15 min of stirring, a solution of the iodide (15.3 mmol) in DMF (10 mL) was added dropwise to the solution and stirred at 70 C for 12 h. After cooled to 0 C, the reaction was quenched with H2O and filtrated to afford colorless solid, which was recrystallized to give a N-alkoxyphthalimide 13a-d. |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 79% | To a stirred suspension of l2-aminododecanoic acid (4.3 g, 20 mmol) in 20 mL MeOH at 0 C was added acetyl chloride (3.6 mL, 2.5 equiv) dropwise. The mixture was then refluxed for 3 h. The solvent was then distilled off under reduced pressure. The white solid obtained was used for the next step without further purification. 100 mL anhydrous THF was added, and then Lithium aluminum hydride (3.2 g, 84 mmol) was added portionwise at 0 C. The mixture was heated under reflux for 16 h. The mixture was cooled down to 0 C, and quenched by 10 mL ice water. 6 mL 15% NaOH(aq) solution was added, and the mixture was stirred at room temperature for 1 h. The gray L1AIH4 turned into off white precipitates and was filtered off, washed with CH2CI2 and MeOH. The filtrate was concentrated to give 12-amino- l-dodecanol (26b) as a white solid (3.18 g, 79%). This material was used for the next step reaction without further purification. 'H NMR (400 MHz, CDCh): d 3.64 (t, J= 6.6 Hz, 2H), 2.68 (t, J= 7.0 Hz, 2H), 1.56 (m, 2H), 1.44 (m, 2H), 1.40- 1.20 (m, 16H). |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 12-Amino-dodecanol-(1) (109) 11.0 g (52 mmol) 108 in 150 ml methanol containing 5.0 g Raney-Nickel catalyst was hydrogenated with hydrogen for 8 hours at 80 C./120 bar with addition of 50 ml liquid ammonia in a high-pressure hydrogenation instrument. 10.3 g (98%) 109 was obtained as a pale yellow oil after filtration, concentration and blow-off. |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| In dichloromethane; | 12-aminododecanaol (50 mg) was stirred in dichloromethane with 1- adamantylisocyanate (44mg) overnight. The reaction was evaporated and EPO <DP n="69"/>carbonyldiimidazole was added in 2 mL acetonitrile. This was refluxed 5 hrs. The solvent was removed in vacuo and the solid was partitioned between dichloromethane and water. The organic layer was washed repeatedly with water to yield the target compound (22mg). 1H NMR (300 MHz, CDCl3) delta = 8.17 (s, IH), 7.45 (s, IH), 7.05 (s, IH), 4.41 (t, J = 7.5 Hz, 2H)5 4.32 (br, IH), 4.21 (br, IH), 3.08 (q, J = 6.7 Hz, 2 H), 2.0 - 1.0 (m, 35H). |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| With lithium aluminium tetrahydride; In tetrahydrofuran; at 0℃; for 48h;Reflux; Inert atmosphere; | General procedure: Freshly distilled acetyl chloride (1.70 mL, 23.90 mmol) was added dropwise to a stirred suspension of 10-aminodecanoic acid 12 (1.80 g, 9.61 mmol) in anhydrous MeOH (20 mL) under N2 atmosphere at 0 C. Once the addition was complete, the mixture was heated under reflux for 3 h. After completion of the reaction, the solvent and excess acetyl chloride were distilled off under reduced pressure affording the corresponding methyl 10-aminodecanoate as a white solid (89%), which was used in the next reaction without further purification. Lithium aluminum hydride (1.65 g, 17.20 mmol) was added in small portions to a stirred suspension of the amino ester intermediate (1.73 g, 8.57 mmol) in anhydrous THF (100 mL) at 0 C. The reaction mixture was heated under reflux for 48 h, then cooled to room temperature and poured into crushed ice. The aqueous layer was vigorously extracted with CH2Cl2 (6 x 80 mL) and the combined organic phases were washed with brine and dried over anhydrous Na2SO4. The solvent was evaporated under reduced pressure and the crude product was recrystallized to obtain pure 16 (0.92 g, 62%). |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| With hydrogen;palladium 10% on activated carbon; In methanol; under 1551.49 Torr; | vi) Cholesteryl 12-hydroxydodecylcarbamate from cholesteryl chloroformate and 12-aminododecan-1-ol. 12-Aminododecanl-1-ol is prepared from 12-bromododecan-1-ol and sodium azide in refluxing 95% ethanol, followed by catalytic hydrogenation (10% Pd/C catalyst, 30 psi hydrogen) in methanol. |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| With triethylamine; In tetrahydrofuran; water; | The crystals dissolved in 20 ml of tetrahydrofuran were added dropwise under ice-cooling to a solution of 1.39 g of <strong>[67107-87-3]12-aminododecanol</strong> and 1.4 ml of triethylamine in 25 ml of tetrahydrofuran. The mixture was stirred overnight while elevating gradually to room temperature and the solvent was distilled away. The residue mixed with water was extracted with chloroform, washed with water and a saturated sodium chloride solution and dried over anhydrous magnesium sulfate. The solvent was distilled away to obtain N-(12-hydroxy-1-dodecanyl)-6-chloronicotinamide. |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 92% | In 1,4-dioxane; at 75℃; for 4h; | Example 14A reaction vessel was charged with 260 parts by weight of <strong>[67107-87-3]12-amino-1-dodecanol</strong>, 184 parts by weight of methyl L-pyroglutamate, and 120 parts by weight of 1,4-dioxane, and the mixture was stirred at 75 C. for 4 hours. The resulting reaction mixture was stripped at 110 C. under reduced pressure to remove the 1,4-dioxane, and 408 parts by weight of white solid was obtained at a yield of 92%. Results of the 13C-NMR shown in Table 14, below, and absorption at 1685 cm-1 (from amide bond) in the measurement of IR spectrum confirmed that the resulting product was an amino acid compound represented by the following formula: TABLE 14 13C-NMR (CDCl3) 64.6ppm (-CH2-OH) 22~31.9ppm (-(CH2)10-] 39.6ppm (-CH2-NH-) 178.4ppm (-NH-CO-) 25.2ppm (-CO-CH2-CH2-) 28.6ppm (-CO-CH2-CH2-) 58.9ppm [-CH(NH2)(COOCH3)] 174.8ppm (-COOCH3) 59.3ppm (-COOCH3) |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| In neat (no solvent); at 20℃; | General procedure: 4.2.1 Method A (0026) To a dioxane [15] solution (5 mL) of tocotrienol (4 mmol), the amine (20 mmol) was added. Mixture was cooled in an ice bath and 37% formaldehyde (21 mmol) was added drop wise while stirring. It was then stirred at room temperature for 1 h and then refluxed overnight. Reaction mixture was concentrated under vacuum and the yellow residue obtained was dissolved in ethyl acetate (20 mL), washed several times with saturated NaCl solution, dried over anhydrous MgSO4, and concentrated in vacuum. The residue obtained was subjected to column chromatography using normal phase silica gel as stationary phase and gradient ethyl acetate/n-hexane system as mobile phase (Scheme 1a).4.2.2 Method B (0027) A mixture of tocotrienol [25] (5.0 mmol), paraformaldehyde (5.0 mmol) and amines (5.0 mmol) was stirred and left overnight at rt. The reaction was carried out under solvent-less conditions (few drops of dioxane or ethanol may be added). The residue was purified by flash chromatography directly from the reaction mixture without any work-up (Scheme 1b). |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| In neat (no solvent); at 20℃; | General procedure: 4.2.1 Method A (0026) To a dioxane [15] solution (5 mL) of tocotrienol (4 mmol), the amine (20 mmol) was added. Mixture was cooled in an ice bath and 37% formaldehyde (21 mmol) was added drop wise while stirring. It was then stirred at room temperature for 1 h and then refluxed overnight. Reaction mixture was concentrated under vacuum and the yellow residue obtained was dissolved in ethyl acetate (20 mL), washed several times with saturated NaCl solution, dried over anhydrous MgSO4, and concentrated in vacuum. The residue obtained was subjected to column chromatography using normal phase silica gel as stationary phase and gradient ethyl acetate/n-hexane system as mobile phase (Scheme 1a).4.2.2 Method B (0027) A mixture of tocotrienol [25] (5.0 mmol), paraformaldehyde (5.0 mmol) and amines (5.0 mmol) was stirred and left overnight at rt. The reaction was carried out under solvent-less conditions (few drops of dioxane or ethanol may be added). The residue was purified by flash chromatography directly from the reaction mixture without any work-up (Scheme 1b). |

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