Structure of 1H-Pyrrolo[2,3-b]pyridin-4-ol
CAS No.: 74420-02-3
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 74420-02-3 |
Formula : | C7H6N2O |
M.W : | 134.14 |
SMILES Code : | OC1=C2C(=NC=C1)[NH]C=C2 |
MDL No. : | MFCD08272229 |
InChI Key : | IXIGMDXJXKDZOF-UHFFFAOYSA-N |
Pubchem ID : | 12646048 |
GHS Pictogram: |
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Signal Word: | Warning |
Hazard Statements: | H302 |
Precautionary Statements: | P280-P305+P351+P338 |
Num. heavy atoms | 10 |
Num. arom. heavy atoms | 9 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 0 |
Num. H-bond acceptors | 2.0 |
Num. H-bond donors | 2.0 |
Molar Refractivity | 38.12 |
TPSA ? Topological Polar Surface Area: Calculated from |
48.91 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.01 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
0.96 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
1.27 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.37 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
1.59 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.04 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.94 |
Solubility | 1.53 mg/ml ; 0.0114 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.57 |
Solubility | 3.57 mg/ml ; 0.0266 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-2.3 |
Solubility | 0.668 mg/ml ; 0.00498 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-6.44 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.28 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
21% | With caesium carbonate; In N,N-dimethyl-formamide; at 20 - 60℃; for 8.5h; | To a solution of compound lH-pyrrolo[2,3-]pyridin-4-ol (0.1 mmol, 13.4 mg, prepared generally according to the procedures outlined by Thibault, C. et al.Org. Lett. 2003, 5, 5023-5025, the disclosure of which is incorporated by reference, in DMF (1 mL) was added cesium carbonate (Aldrich, 0.25 mmol, 81 mg). The mixture was stirred at room temperature for 0.5 h. To this mixture was added 2,4,5-trifluoro- iV-(l-(4-fluorophenyl)-2-oxo-l,2-dihydropyridin-3-yl)beiizamide (36 mg, 0.1 mmol). The reaction mixture was heated at 60 0C for 8 h. After the reaction mixture was cooled to room temperature, 2 mL of cold water was added. The reaction mixture was extracted with EtOAc (3 x 20 mL). The organic extracts were dried with MgSO4, concentrated in vacuo, and purified by preparative HPLC. The desired fractions were combined, concentrated in vacuo, and lyophilized to dry to give the title compound (trifluoroacetic acid salt, 10.0 mg, 21percent yield) as a white solid. 1H NMR (CD3OD) delta 8.61 (d, IH, J= 5.7 Hz), 8.26 (d, IH, J= 6.6 Hz), 8.02 (dd, IH, J= 11.0, 6.6 Hz), 7.51 (d, IH, J= 3.9 Hz), 7.29-7.25 (m, 3H), 7.36 (d, IH, J= 6.6 Hz), 7.25 (t, 2H, J= 8.8 Hz), 6.90 (d, IH, J= 6.6 Hz), 6.60 (d, IH, J= 3.3 Hz), 6.50 (t, IH, J= 7.2 Hz); MS(ESI+) m/z All..22 (M + H)+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
80% | With triphenylphosphine; diethylazodicarboxylate; In tetrahydrofuran; at 20℃;Inert atmosphere; | 4-Ethoxy-1H-pyrrolo[2,3-b]pyridineDiethyl azodicarboxylate (DEAD) (520 mul, 3.3 mmol) is added dropwise, at ambient temperature and under an inert atmosphere, to a solution of PPh3 (1.04 g, 3.96 mmol) in anhydrous THF (13 ml). This solution is transferred via a tube, under an inert atmosphere, into a round-bottomed flask containing a solution of <strong>[74420-02-3]4-hydroxy-7-azaindole</strong> (222 mg, 1.65 mmol) and ethanol (115 mul, 1.98 mmol) in anhydrous tetrahydrofuran (THE) (41 ml). The solution is stirred at ambient temperature for 2 h. The solvent is evaporated. The residue obtained is purified with a chromatography column (eluent: CH2Cl2/MeOH 98:2) to give the desired compound (214 mg, 80percent). Solid; M.p.=176-178° C. (Et2O); 1H NMR (300 MHz, CDCl3) delta 1.52 (t, 3H, J=7.1 Hz, CH3), 4.26 (q, 2H, J=7.1 Hz, CH2), 6.53 (d, 1H, J=5.6 Hz, Harom), 6.59 (broad s, 1H, Harom), 7.18 (broad s, 1H, Harom), 8.18 (d, 1H, J=5.6 Hz, Harom), 9.64 (broad s, 1H, NH); MS (SI) m/z 163 (M+H+). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
39% | With potassium carbonate; In dimethyl sulfoxide; at 20℃; for 1.0h; | A solution of 1-fluoro-4-nitro-2-(trifluoromethyl)benzene (5.3 mL, 38 mmol) and <strong>[74420-02-3]1H-pyrrolo[2,3-b]pyridin-4-ol</strong> (CAS No. [74420-02-3]; 4.67 g, 34.8 mmol) in DMSO (110 mL) was treated withpotassium carbonate (19.2 g, 139 mmol) and stirred at room temperature for 1 hour. The reaction mixture was diluted with ethyl acetate (200 mL) and washed with two times with 20 mL water and brine (20 mL), dried with sodium sulfate and concentrated in vacuo. The resulting residue was purified via a Biotage chromatography system (bOg snap KP-Silcolumn, hexane I 20 ? 100percent ethyl acetate) to obtain 4.62 g (96 percent purity, 39 percent yield) of thedesired title compound.1HNMR (400 MHz, DMSO-d6) delta [ppm]: 6.11 (d, 1H), 6.92 (d, 1H), 7.25 (d, 1H), 7.48 (d, 1H),8.28 (d, 1 H), 8.46 (dd, 1 H), 8.58 (d, 1 H), 12.05 (br s, 1 H). |
39% | With potassium carbonate; In dimethyl sulfoxide; at 20℃; for 1.0h; | A solution of 1 -fluoro-4-nitro-2-(trifluoromethyl)benzene (5.3 mL, 38 mmol) and 1 /-/-pyrrolo[2,3- b]pyridin-4-ol (CAS No. [74420-02-3]; 4.67 g, 34.8 mmol) in DMSO (1 10 mL) was treated with potassium carbonate (19.2 g, 139 mmol) and stirred at room temperature for 1 hour. The reaction mixture was diluted with ethyl acetate (200 mL) and washed with two times with 20 mL water and brine (20 mL), dried with sodium sulfate and concentrated in vacuo. The resulting residue was purified via a Biotage chromatography system (100g snap KP-Sil column, hexane / 20 - 100percent ethyl acetate) to obtain 4.62 g (96 percent purity, 39 percent yield) of the desired title compound. 1H-NMR (400 MHz, DMSO-d6) delta [ppm]: 6.1 1 (d, 1 H), 6.92 (d, 1 H), 7.25 (d, 1 H), 7.48 (d, 1 H), 8.28 (d, 1 H), 8.46 (dd, 1 H), 8.58 (d, 1 H), 12.05 (br s, 1 H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
52% | With potassium carbonate; In dimethyl sulfoxide; at 20℃; for 1.0h; | A solution of 1 ,2,3-trifluoro-5-nitrobenzene (CAS No. [66684-58-0]; 3.59 g, 20.3 mmol) and 1 H- pyrrolo[2,3-b]pyridin-4-ol (CAS No. [74420-02-3]; 1 .10 eq., 2.99 g, 22.3 mmol) in DMSO (65 mL) was treated with potassium carbonate (4.00 eq, 1 1 .2 g, 81.1 mmol) and stirred at room temperature for 1 hour. The reaction mixture was diluted with ethyl acetate (500 mL) and washed with water (3 x 200 mL) and brine (150 mL), dried with sodium sulfate and concentrated in vacuo. The obtained material was purified by flash chromatography (S1O2- hexane/ ethyl acetate) to give the title compound (3.1 g, 52percent). LC-MS (method 2): Rt = 1 .13 min; MS (ESIpos): m/z = 292 [M+H]+. 1H-NMR (400 MHz, DMSO-d6) delta [ppm] = 6.35 (d, 1 H), 6.59 (d, 1 H), 7.47 (d, 1 H), 8.13 (d, 1 H), 8.37 - 8.43 (m, 2H), 1 1 .97 (br s, 1 H). |
52% | With potassium carbonate; In dimethyl sulfoxide; at 20℃; for 1.0h; | A solution of 1 ,2,3-trifluoro-5-nitrobenzene (CAS No. [66684-58-0]; 3.59 g, 20.3 mmol) and 1 H- pyrrolo[2,3-b]pyridin-4-ol (CAS No. [74420-02-3]; 1 .10 eq., 2.99 g, 22.3 mmol) in DMSO (65 mL) was treated with potassium carbonate (4.00 eq, 1 1.2 g, 81.1 mmol) and stirred at room temperature for 1 hour. The reaction mixture was diluted with ethyl acetate (500 mL) and washed with water (3 x 200 mL) and brine (150 mL), dried with sodium sulfate and concentrated in vacuo. The obtained material was purified by flash chromatography (S1O2- hexane/ ethyl acetate) to give the title compound (3.1 g, 52percent). LC-MS (Method 2): Rt = 1 .13 min; MS (ESIpos): m/z = 292 [M+H]+. 1H-NMR (400 MHz, DMSO-d6) delta [ppm] = 6.35 (d, 1 H), 6.59 (d, 1 H), 7.47 (d, 1 H), 8.13 (d, 1 H), 8.37 - 8.43 (m, 2H), 1 1 .97 (br s, 1 H). |
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