Structure of 91419-49-7
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CAS No. : | 91419-49-7 |
Formula : | C11H20N2O3 |
M.W : | 228.29 |
SMILES Code : | C(=O)(OC(C)(C)C)N1CCCC(C1)C(N)=O |
MDL No. : | MFCD06658365 |
GHS Pictogram: |
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Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 16 |
Num. arom. heavy atoms | 0 |
Fraction Csp3 | 0.82 |
Num. rotatable bonds | 4 |
Num. H-bond acceptors | 3.0 |
Num. H-bond donors | 1.0 |
Molar Refractivity | 64.31 |
TPSA ? Topological Polar Surface Area: Calculated from |
72.63 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
2.19 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
0.48 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
0.74 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.62 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
0.26 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
0.86 |
Log S (ESOL):? ESOL: Topological method implemented from |
-1.29 |
Solubility | 11.6 mg/ml ; 0.0508 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (Ali)? Ali: Topological method implemented from |
-1.57 |
Solubility | 6.08 mg/ml ; 0.0266 mol/l |
Class? Solubility class: Log S scale |
Very soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-0.87 |
Solubility | 30.7 mg/ml ; 0.135 mol/l |
Class? Solubility class: Log S scale |
Soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-7.35 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
2.74 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With pyridine; trichlorophosphate; at 0 - 20℃; | 3(B) 3-Cyano-piperidine-1-carboxylic acid tert-butyl ester Phosphorus oxychloride (0.64 mL, 6.89 mmol) was added dropwise at 0 C. to a solution of <strong>[91419-49-7]3-carbamoyl-piperidine-1-carboxylic acid tert-butyl ester</strong> (1.58 g, 6.89 mmol) in pyridine (15 mL), under nitrogen atmosphere. After stirring overnight at room temperature, ethyl acetate was added and the solution was washed with 10% HCl (2 times). The phases were separated and the organics were dried over sodium sulphate and evaporated to dryness under reduced pressure. The title compound was used for the next step without further purification. Yield: quantitative; LCMS (RT): 4.48 min (Method A); MS (ES+) gave m/z: 211.1. |
100% | With phosphorus pentoxide; In pyridine; at 0 - 20℃; | Phosphorus oxychloride (0.64 mL, 6.89 mmol) was added dropwise at 0C to a solution of S-carbamoyl-piperidine-l-carboxylic acid tert-butyl ester (1.58 g, 6.89 mmol) in pyridine (15 mL), under nitrogen atmosphere. After stirring overnight at room temperature, ethyl acetate was added and the solution was washed with 10% HCl (2 times). The phases were separated and the organics were dried over sodium sulphate and evaporated to dryness under reduced pressure. The title compound was used for the next step without further purification. Yield: quantitative; LCMS (RT): 4.48 min (Method A); MS (ES+) gave m/z: 211.1 (MH+). |
87% | With triethylamine; trifluoroacetic anhydride; In dichloromethane; at 20℃; for 16h; | Tert-butyl 3-cyanopiperidine-l-carboxylate (3). To a solution of tert-butyl-3- carbamoyl piperidine-l-carboxylate 2 (1.0 g, 4 mmol) in anhydrous dichloromethane (20 mL), triethylamine (3.1 g, 31.0 mmol) was added followed by the dropwise addition of trifluoroaceticanhydride (4.1 g, 20.0 mmol). The resulting mixture was warmed to room temperature and stirred for 16 h. The reaction mixture was partitioned between dichloromethane (50 mL) and water (50 mL). The organic phase was washed with saturated bicarbonate solution (100 mL). The organic phase was dried over anhydrous sodium sulfate and concentrated under reduced pressure to yield 3 (800 mg, 87%) as a thick liquid. 1H NMR (400 MHz, CDC13) delta 1.49 (s, 9H), 1.77 (m, 2H), 1.97 (brs, 1H), 2.66 (m, 1H), 3.35-3.84 (brs, 4H), |
53% | Step 3. Tert-butyl 3-cyanopiperidine-1-carboxylate; A 250-mL 3-necked round-bottomed flask was charged with a solution of <strong>[91419-49-7]tert-butyl 3-carbamoylpiperidine-1-carboxylate</strong> (5 g, 21.49 mmol, 1.00 equiv, 98%) in pyridine (50 mL). To this solution, POCl3 (5 g, 32.24 mmol, 1.50 equiv, 98%) was added drop wise at 0 C. and allowed to stir at 0 C. for 1 hour. The progress was monitored by TLC (EA:PE=1:1). The pyridine was removed by distillation. The mixture was diluted with H2O (40 mL) and pH was adjusted to 8 by addition of aqueous NaHCO3. Then, the resulting mixture was extracted with ethyl acetate (3×30 mL). Combined organic layers were dried over anhydrous sodium sulfate, filtered off and concentrated on a rotary evaporator. The crude was purified by distillation under reduced pressure (30 mm Hg) and the fractions collected at 40 C. to afford tert-butyl 3-cyanopiperidine-1-carboxylate as yellow oil (2.6 g, 53%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | Triethylamine (0.96 mL, 6.89 mmol) and then ethyl chloroformate (0.69 mL, 7.23 mmol) were added dropwise at O0C to a solution of l-Boc-piperidine-3- carboxylic acid (1.58 g, 6.89 mmol) in chloroform (10 mL), under nitrogen atmosphere. After stirring 10 min at 0C, NH3 (gas) was bubbled into the solution for Ih. The reaction mixture was then stirred at room temperature for 3h, 5% NaHCO3 (aq) was added and the phases were separated. The organic layer was dried over sodium sulphate and evaporated under reduced pressure to afford the title compound, which was used for the next step without further purification.Yield: quantitative; LCMS (RT): 3.31 min (Method A); MS (ES+) gave m/z: 229.0 (MH+). | |
72% | Step 2. Tert-butyl 3-carbamoylpiperidine-1-carboxylate; A 1-L 3-necked round-bottomed flask was charged with a solution of 1-(tert-butoxycarbonyl)piperidine-3-carboxylic acid (10 g, 42.79 mmol, 1.00 equiv, 98%), TEA (5.2 g, 50.46 mmol, 1.18 equiv, 98%) in THF (100 mL). To this mixture was added isobutyl carbonochloridate (6.8 g, 49.00 mmol, 1.15 equiv, 98%) drop wise at 10 C. The resulting solution was stirred for 15 minutes at 10 C. in a water/ice bath. Then, to the mixture was added NH3.H2O (25%, 60 mL) and allowed to stir for 10 minutes at 10 C. Then, it was treated with water (40 mL) to afford off-white solids after filtration. The solid was dried in an oven under reduced pressure affording tert-butyl 3-carbamoylpiperidine-1-carboxylate as white solid (7 g, 72%). | |
tert-butyl 3-carbamoylpiperidine-l-carboxylate (2). To a solution of l-(tert- butoxycarbonyl) piperidine-3-carboxylic acid 1 (50.0 g, 218.0 mmol) in anhydrous dichloromethane (400 mL), triethylamine (44.1 g, 437 mmol) was added at 0 C followed by the addition of isobutylchloroformate (596.0 g, 437.0 mmol). The resulting mixture was stirred at room temperature for 1 hour. The reaction mixture was concentrated under reduced pressure. The residue obtained was cooled to 0 C followed by the addition of NH4OH. The solid observed was filtered, washed with water and dried to yield 2 (40.0 g, 80%) as a white solid. 1H NMR (400 MHz, CDCls) delta 1.47 (s, 9H), 1.63 (m, 1H), 1.85 (s, 2H), 2.36 (m, 1H), 3.07 (m, 1H), 3.29 (brs, 1H), 3.66 (brs, 1H), 3.85 (m, 1H), 5.5 (s, 1H), 6.1 (brs, 1H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
95% | In chloroform; at 20℃; | To a solution of amine 15.1 (10.7 g, 83.6 mmol) in CHC13 (150 mL) was added (Boc)20 (19 g, 87 mmol). The mixture was stirred at RT overnight. The reaction mixture was concentrated in vacuo to give a white solid, which was recrystallized with hexane to afford compound 15.2 (17g, 95percent yield). |
79% | To a stirred solution of piperidine-3-carboxylic acid amide (1.28 g, 10 mmol) in methanol (50 ml) triethylamine (1.4 ml, 10 mmol) was added and the mixture was cooled to 0-5 0C. A solution of di-tert-butyl dicarbonate (2.4 g, 11 mmol) in methanol (30 ml) was added and the reaction mixture was kept at room temperature overnight. The mixture was EPO <DP n="38"/>concentrated in vacuo, then the residue was suspended in 5percent sodium hydrogencarbonate solution (30 ml), filtered and washed with water to yield 1.8 g (79 percent) of the title compound. Melting point: 174-175 °C |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
80% | With tetraphosphorus decasulfide; sodium carbonate; In tetrahydrofuran; at 20℃; for 1.5h;Inert atmosphere; | To a flask under nitrogen was added P4Si0 (4.4 g, 1 mmol), THF (100 mL) and Na2C03 (1.06 g, 1 mmol). The mixture was vigorously stirred for 15 min after which time a solution of compound 15.2 (2.28 g, 1 mmol) in THF (200 mL) was added. The resulting mixture was stirred at RT for 1.5 h and then diluted with 10% Na3PC>4 (100 mL) and extracted with EtOAc (2 x 200 mL). The combined organic phases were washed with water, brine, dried (MgSC^), filtrated and concentrated in vacuo to afford compound 15.3 as a white solid (1.90 g, 80%). |
With Lawessons reagent; In toluene; at 62℃; for 4h; | tert-Butyl 3-carbamothioyIpiperidine-l-carboxylate (92):Amide 91 (2.0 g, 8.76 mmol) and Lawesson's reagent (1.79 g, 4.42 mmol) were stirred in toluene (45 niL) and the mixture heated to 62 C for 4 hours. The mixture was treated with 5 g of silica gel and 15 mL of methanol, and evaporated to dryness. The solid residue was chromatographed over 30 g of silica gel, eluting with CH2Cl2IMeOH (96:4). The product was chromatographed again, eluting with CH2CbMeOH (97:3) and dried to 1.33 g of 92 as a white foam. MS (ESI) m/z 283 [M+K]+. 1H NMR (CDCl3) delta 1.30-1.50 (m, 10 H), 1.55-1.65 (bs, IH), 1.9-2.0 (m, IH), 2.0-2.2 (m, IH), 2.60-2.75 (bs, IH), 3.0-3.2 (bs, IH), 3.3-3.45 (bs, IH), 3.6-3.95 (m, 2H), 7.43 (bs, 2H). | |
With Lawessons reagent; In toluene; at 62℃; for 4h; | tert-Butyl 3-carbamothioylpiperidine-l-carboxylate (9AA):Amide 8AA (2.0 g, 8.76 mmol) and Lawesson's reagent (1.79 g, 4.42 mmol) were stirred in toluene (45 mL) and the mixture heated to 62 C for 4 hours. The mixture was treated with 5 g of silica gel and 15 mL of methanol, and evaporated to dryness. The solid residue was chromatographed over 30 g of silica gel, eluting with CH2Cl2:MeOH (96:4). The product was chromatographed again, eluting with CH2Cl2:MeOH (97:3) and dried to 1.33 g of 2 as a white foam. MS (ESI) m/z 283 [M+K]+. NMR (CDC13) delta 1 .30-1.50 (m, 10 H), 1.55-1.65 (bs, 1H), 1.9-2.0 (m, 1H), 2.0-2.2 (m, 1H), 2.60-2.75 (bs, 1H), 3.0-3.2 (bs, 1H), 3.3-3.45 (bs, 1H), 3.6-3.95 (m, 2H), 7.43 (bs, 2H). |
With Lawessons reagent; In toluene; at 62℃; for 4h; | Amide 8AA (2.0 g, 8.7 mmol) and Lawessoa's reagent (1 .79 g, 4.42 mmol) were stirred -in toluene (45 ml) and the mixture heated to 62 C for 4 hours. The mixture was treated with 5 g of silica gel and 15 mL of methanol, and e v aporated to dryness. The .solid residue, was The product was cbromatographed again, elating with?¾¾:Muepsilon (97:3) and dried to 1.33 g of 2 as a white foam. MS (ESI) m z 283 M-f l NMR (CDC¾) delta 1.30-1.50 (m, 10 II). 1.55-1.65 (bs, 1H), 1.9-2.0 ( , I B), 2.0-2.2 (m, IH), 2.60-2.75 (bs, IH), 3.0-3.2 (bs, ,1 H), 3.3-3.45 (bs, 1 H), 3.6- 3.95 (m, 2H), 7.43 (bs/2H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
100% | With ammonia; In chloroform; at 0 - 20℃; for 4h; | 3(A) 3-Carbamoyl-piperidine-1-carboxylic acid tert-butyl ester Triethylamine (0.96 mL, 6.89 mmol) and then ethyl chloroformate (0.69 mL, 7.23 mmol) were added dropwise at 0 C. to a solution of 1-Boc-piperidine-3-carboxylic acid (1.58 g, 6.89 mmol) in chloroform (10 mL), under nitrogen atmosphere. After stirring 10 min at 0 C., NH3 (gas) was bubbled into the solution for 1 h. The reaction mixture was then stirred at room temperature for 3 h, 5% NaHCO3 (aq) was added and the phases were separated. The organic layer was dried over sodium sulphate and evaporated under reduced pressure to afford the title compound, which was used for the next step without further purification. Yield: quantitative; LCMS (RT): 3.31 min (Method A); MS (ES+) gave m/z: 229.0. |
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