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Structure of 2972-52-3
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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| CAS No. : | 2972-52-3 |
| Formula : | C5HCl3N2O |
| M.W : | 211.43 |
| SMILES Code : | ClC1=NC=C(C(=N1)Cl)C(=O)Cl |
| MDL No. : | MFCD09742432 |
| InChI Key : | DZTIFMWYYHCREC-UHFFFAOYSA-N |
| Pubchem ID : | 13784112 |
| GHS Pictogram: |
|
| Signal Word: | Danger |
| Hazard Statements: | H302+H312+H332-H314 |
| Precautionary Statements: | P280-P305+P351+P338-P310 |
| Class: | 8 |
| UN#: | 3265 |
| Packing Group: | Ⅲ |
| Num. heavy atoms | 11 |
| Num. arom. heavy atoms | 6 |
| Fraction Csp3 | 0.0 |
| Num. rotatable bonds | 1 |
| Num. H-bond acceptors | 3.0 |
| Num. H-bond donors | 0.0 |
| Molar Refractivity | 42.24 |
| TPSA ? Topological Polar Surface Area: Calculated from |
42.85 Ų |
| Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
1.62 |
| Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
2.63 |
| Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
2.16 |
| Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
0.79 |
| Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
2.76 |
| Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
1.99 |
| Log S (ESOL):? ESOL: Topological method implemented from |
-3.15 |
| Solubility | 0.151 mg/ml ; 0.000715 mol/l |
| Class? Solubility class: Log S scale |
Soluble |
| Log S (Ali)? Ali: Topological method implemented from |
-3.18 |
| Solubility | 0.14 mg/ml ; 0.00066 mol/l |
| Class? Solubility class: Log S scale |
Soluble |
| Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-3.46 |
| Solubility | 0.074 mg/ml ; 0.00035 mol/l |
| Class? Solubility class: Log S scale |
Soluble |
| GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
| BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
| P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
| CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
| CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
| CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
| CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
| CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
| Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-5.72 cm/s |
| Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
| Ghose? Ghose filter: implemented from |
None |
| Veber? Veber (GSK) filter: implemented from |
0.0 |
| Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
| Muegge? Muegge (Bayer) filter: implemented from |
0.0 |
| Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
| PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
| Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
| Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
| Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.63 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 100% | With phosphorus pentachloride; trichlorophosphate; at 0℃; for 16h;Inert atmosphere; Reflux; | Example 9; 7-Amino-8-ethyl-5-oxo-2-[4-(3-pyridin-3-ylmethylureido)phenyl]-5,8-dihydropyrido[2,3-d]pyrimidine-6-carboxylic Acid Methylamide (No. 53)9.1: 2,4-Dihydroxypyrimidine-5-carbonyl Chloride In a 250 ml round-bottomed flask, under a nitrogen atmosphere, 10.0 g (64.0 mmol) of 2,4-dihydroxypyrimidine-5-carboxylic acid are dissolved in 46 ml (500.0 mmol) of POCl3. The temperature of the mixture is reduced to 0 C. by means of an ice bath, and then 47.7 g (230 mmol) of PCl5 are added in small portions. The solution is stirred for 16 h at reflux and the solvents are then evaporated off under reduced pressure. The residue is taken up and triturated in 100 ml of toluene and then filtered. This operation is repeated three times and then the filtrate is evaporated under reduced pressure, so as to give 13.5 g (64.0 mmol) of compound in the form of a yellow oil which is used directly for the next stage. Yield=100%. |
| 99% | With phosphorus pentachloride; trichlorophosphate; at 0℃; for 16h;Reflux; | 11.1: 2,4-Dichloropyrimidine-5-carbonyl chloride 2,4-Dihydroxypyrimidine-5-carboxylic acid (10 g, 64 mmol) is dispersed in POCl3 (45 ml) at 0 C. PCl5 (46.6 g, 224 mmol) is carefully added and the mixture is stirred under gentle reflux for 16 h. The slightly yellow solution is evaporated under reduced pressure and the solid is washed with toluene, and the solution is filtered and the filtrate evaporated to give 13.4 g (yd: 99%) of the compound. 1H NMR, d6-DMSO (300 MHz): 9.13 (s, 1H). |
| 99% | With phosphorus pentachloride; trichlorophosphate; at 0℃; for 16h;Reflux; | To POC13 (45mL, 0.07 1 mol) in a round bottom flask was added 2,4-dihydroxypyrimidine-5-carboxylic acid(10.00 g, 0.064 mol) portion wise at 0 C, followed by slow addition of PC15 (46.60 g, 0.229 mol). The reaction mixture was warmed to r.t. and heated to reflux for 16 h. The mixture was concentrated to dryness, slurried with DCM (30 mL), and the solid precipitated was filtered and washed with DCM (2 x 20 mL). The filtrate was evaporated under reduced pressure to afford the title compound (13.900 g, 99%) as a yellow oil. ‘H NMR (400 MHz, CDC13): ö 9.25 (s, 1H). |
| 96.8% | With phosphorus pentachloride; trichlorophosphate; at 5 - 100℃; for 7h; | (1) Firstly disperse 125 g of uracil-5-carboxylic acid in 400 ml of phosphorus oxychloride, cool to 5-10 C, add 500 g of phosphorus pentachloride to complete mixing, and heat to 100 C for reflux reaction, the reaction time is 7 hours;(2) After the reflux reaction is completed, the temperature is reduced, and excess phosphorus oxychloride is removed by a reduced pressure distillation method;(3) 177 g of pure product was obtained by distillation under reduced pressure, the purity was greater than 97%, and the yield was 96.8%. |
| 96% | With phosphorus pentachloride; trichlorophosphate; at 0 - 105℃; for 16h; | At 0C, 2,4-dihydroxypyrimidine-5-carboxylic acid (5.0g, 32.0mmol) was added to POCl3 (23mL) in batches, then PCl5 (23.3g) was added, and the mixture was moved to 105C and reacted for 16 hours, then concentrated , Add n-heptane (20 mL), filter, and concentrate the filtrate to obtain 6.5 g of product with a yield of 96%. |
| 92% | With phosphorus pentachloride; trichlorophosphate; at 115℃; for 12h; | To a solution of 2,4-dihydroxypyrimidine-5- carboxylic acid (5.0 g, 32.0 mmol) in POCI3 (50 mL) was added PCI5 (23.9 g, 115.2 mmol), and the resulting solution was heated to 115 C and stirred for 12 h. The solvent was evaporated and the crude residue was diluted with ethyl acetate (100 mL). The solid was filtered and the filtrate was concentrated to give the title compound as brown oil (6.2 g, 92%). |
| 78.8% | With phosphorus pentachloride; trichlorophosphate; at 120℃; for 16.5h;Cooling with ice; | Under ice-water bath stirring, phosphorus pentachloride (29.6g, 142mmol) was slowly added to 2,4-dihydroxypyrimidine-5-carboxylic acid (CAS: 23945-44-0, 6.2g, 40mmol) in batches. Phosphorus oxychloride (30ml) solution, stirred for 30min in an ice bath. Then the temperature was gradually increased to reflux (oil bath temperature 120C). After refluxing for 16 hours, it was cooled to room temperature. Carefully concentrate under reduced pressure, and the distillate is phosphorus oxychloride, which is quenched with warm water. After the residue was dissolved in dichloromethane, it was filtered. After the mother liquor was concentrated again, 6.7 g of oil was obtained, with a crude yield of 78.8%. Directly used in the next reaction |
| 70% | With phosphorus pentachloride; trichlorophosphate; | Method 31 2,4-Dichloro-5-chloroformylpyrimidine 5-Carboxy-2,4-dihydroxypyrimidine (19.0 g, 0.12 mol), phosphorus pentachloride (83.5 g, 0.40 mol); and phosphoryl chloride (28.3 ml, 0.30 mol) were heated at 114 C. for 5 hours. The resulting solution was cooled overnight and the volatiles removed by evaporation. The residue was purified by vacuum distillation to yield the title compound as a clear oil (17.85 g, 70%). M/z: 211. |
| 46% | Example 16 2,4-DICHLOROPYRIMIDINE-5-CARBONYL CHLORIDE The title compound was prepared as described in the literature (Smith and Christensen, J. Org. Chem. 20:829, 1955) starting from 2,4-dihydroxypyrimidine-5-carboxylic acid. The compound was obtained by distillation; b.p. 90-100 C. (1.5 mm/Hg) in a yield of 46%; 1 H-NMR (CDCl3) δ 9.29. | |
| 35% | With phosphorus pentachloride; trichlorophosphate; | REFERENTIAL EXAMPLE 26 2,4-Dichloro-5-chlorocarbonylpyrimidine STR43 Twenty grams of 2,4-dihydroxypyrimidine-5-carboxylic acid and 220 ml of phosphorus oxychloride were reacted under reflux for 10 hours. Thereafter, the reaction mixture was cooled to room temperature and 100 g of phosphorus pentachloride was added. The contents were again reacted at 120 C. for 7 hours. After completion of the reaction, phosphorus oxychloride was distilled off and the reaction product was purified by its distillation under reduced pressure (b.p. 130-140 C./1 mmHg, yield: 35%). |
| With phosphorus pentachloride; trichlorophosphate; at 75℃;Heating / reflux; | Prepared according to GB 1,182, 086: URACIL-5-CARBOXYLIC ACID MONOHYDRATE (15. 1 G, 86.7 mmol) was added in one portion to a suspension of phosphorus pentachloride (72.2 g, 346.7 mmol) in phosphorus oxychloride (50 mL). More phosphorus oxychloride (20 mL) was added. The reaction mixture was then heated up to 75 C and gradually to reflux overnight. The phosphorus oxychloride was then distilled off. The mixture was filtered, the precipitate washed with ethyl acetate and the filtrate was concentrated in vacuo to give the title compound (18.3 G) as a yellow oil 'H NMR (400 MHz, CDC13) : 9.26 (1H) ; 13C NMR (400 MHz, CDC13) : 126.44, 161.34, 162.19, 163.94, 164.43 | |
| With phosphorus pentachloride; trichlorophosphate; at 115℃; | 2,4-dichloro-5-pyrimidinecarbonyl chlorideA solution of 2,4-dihydroxy-pyrimidine-5-carboxylic acid (5Og) and phosphorous pentachloride (239g) in phosphorous oxychloride (230ml) was stirred at 1150C overnight. The excess phosphorous oxychloride was removed in vacuo and ethyl acetate (200ml) added to the residue. The mixture was filtered and the filtrate was concentrated to give yellow oil (78 g) as crude 2,4-dichloro-5-pyrimidinecarbonyl chloride which was used in the next step without further purification.1 H NMR (300MHz, D6-DMSO): δH 9.13(1 H, s). | |
| With phosphorus pentachloride; trichlorophosphate; for 16h;Heating / reflux; | A suspension of 17.0 g (106 mmol) of 2,4-dihydroxypyrimidine-5-carboxylic acid hydrate and 81.1 g (370 mmol) of phosphorus pentachloride in 78 mL phosphorus oxycloride was heated at reflux for 16 h. The excess phosphorus oxycloride was removed by distillation and the residue was filtered. The filtered solids were rinsed with ethyl acetate and the filtrate was concentrated to give the title compound, which was used without further purification. 1H- NMR (CDC13) δ 9.25 (s, 1 H). | |
| With phosphorus pentachloride; trichlorophosphate; at 115℃; | Example 17Synthesis of 5-Carboxyamide-2,4-DichloropyrimidineTo a 2 L round bottom flask equipped with water condenser and a CaCl2 drying tube, 2,4-dihydroxypyrimidine (25 g, 0.16 mole) was added to PCl5 (117 g, 0.56 mole), and POCl3 (250 ml, 2.6 mole). The mixture was heated at 115 C. overnight to give a clear, slightly light yellow solution. The mixture was cooled to room temperature, and was concentrated under reduced pressure to give pale yellowish oil.To this oil, anhydrous 1,4-dioxane (300 ml) was added and the mixture was cooled to 0 C. in an ice/water bath. 35 ml of NH3 in water (28%) was added dropwise to the mixture with stirring, temperature was kept below 5 C. The mixture changed from clear to white with precipitate forming, and was stirred for 1 hour at 0 C., reaction was followed by TLC (1:1 Hexanes:Ethyl Acetate). Ethyl acetate (700 ml) and water (500 ml) were added to the mixture, the 2 layers were separated. The organic layer was dried with Na2SO4, and filtered. The solution was concentrated under reduced pressure to give a light yellow solid. This light yellow solid was sonicated with methylene chloride (200 ml), and filtered to give a pale yellow solid (16 g). This pale yellow solid was dissolved into ethyl acetate (1.5 L) and washed with saturated NaHCO3 (500 ml). The organic layer was dried with Na2SO4, filtered, and concentrated under reduced pressure to give 13.1 g of product as a white solid (44% yield).1H NMR (DMSO-d6, 300 MHz): δ 8.86 (s, 1H), 8.14 (bs, 1H), 8.02 (bs, 1H). | |
| With phosphorus pentachloride; trichlorophosphate; at 115℃; | Example 3 Synthesis of 5-carboxyamide-2,4-dichloropyrimidine To a 2 L round bottom flask equipped with water condenser and a CaCl2 drying tube, 2,4-dihydroxypyrimidine (25 g, 0.16 mole) was added to PCl5 (117 g, 0.56 mole), and POCl3 (250 ml, 2.6 mole). The mixture was heated at 115 C. overnight to give a clear, slightly light yellow solution. The mixture was cooled to room temperature, and was concentrated under reduced pressure to give pale yellowish oil. To this oil, anhydrous 1,4-dioxane (300 ml) was added and the mixture was cooled to 0 C. in an ice/water bath. 35 ml of NH3 in water (28%) was added dropwise to the mixture with stirring, temperature was kept below 5 C. The mixture changed from clear to white with precipitate forming, and was stirred for 1 hour at 0 C., reaction was followed by TLC (1:1 Hexanes:Ethyl Acetate). Ethyl acetate (700 ml) and water (500 ml) were added to the mixture, the 2 layers were separated. The organic layer was dried with Na2SO4, and filtered. The solution was concentrated under reduced pressure to give a light yellow solid. This light yellow solid was sonicated with methylene chloride (200 ml), and filtered to give a pale yellow solid (16 g). This pale yellow solid was dissolved into ethyl acetate (1.5 L) and washed with sat. NaHCO3 (500 ml). The organic layer was dried with Na2SO4, filtered, and concentrated under reduced pressure to give 13.1 g of product as a white solid (44% yield). 1H NMR (DMSO-d6, 300 MHz): δ 8.86 (s, 1H), 8.14 (bs, 1H), 8.02 (bs, 1H). | |
| 4.38 g | With phosphorus pentachloride; trichlorophosphate; for 4.5h;Reflux; | 5.1.32 2,4-Dichloropyrimidine-5-carboxamide (27) To a solution of 2,4-dihydroxypyrimidine-5-carboxylic acid (25) (2.98 g, 19.1 mmol) in POCl3 (7.10 mL, 76.4 mmol) was added PCl5 (13.1 g, 63.0 mmol) and the reaction mixture was refluxed for 4.5 h. After cooling, the reaction mixture was concentrated in vacuo. To the resulting residue, toluene (20 mL) was added and the mixture was concentrated in vacuo again. The residue was dissolved in CH2Cl2 (20 mL) and filtered. The filtrate was concentrated in vacuo to give 2,4-dichloropyrimidine-5-carbonyl chloride (26) as a yellow oil (4.38 g). This compound was used for next reaction without further purification. To a solution of 26 (4.38 g) in CH2Cl2 (5 mL) were added 28% NH3 aqueous solution (3 mL) and H2O (3 mL) at -10 C, and the reaction mixture was stirred at -10 C for 5 min. The organic solvent was removed under reduced pressure and the resulting precipitate was collected by filtration to give the title compound (3.13 g, 16.3 mmol, 85% from 25) as a pale yellow solid. 1H NMR (DMSO-d6) δ: 8.05 (1H, s), 8.17 (1H, s), 8.90 (1H, s); MS (ESI) m/z: 192 (M+H)+. |
| With phosphorus pentachloride; trichlorophosphate; at 115℃; | (a) (2,4-dichloropyrimidin-5-yl')(2-methylmorpholino')methanone (compound 3) Phosphorus pentachloride (128.1 g, 0.615 mol) was added portionwise to a stirred mixture of 2,4-dihydroxypyrimidine-5-carboxylic acid (compound 1) (26.7 g, 171 mmol, Alfa Aesar) in phosphorous oxychloride (122.2 ml_, 1.29 mol) at RT. The reaction mixture was heated to 115 C and stirred overnight. The reaction was cooled to RT and the volatiles were removed under vacuum. The residue was diluted with cyclohexane and filtered. The filtrate was evaporated under reduced pressure to give 2,4-dichloropyrimidine-5-carbonyl chloride (compound 2) as a yellow oil (37.9 g). This material was used in the next step without further purification. A solution of 2-methylmorpholine (Intermediate B) (4.91 g, 48.6 mmol, Enamine) and DIPEA (8.5 ml_, 48.8 mmol) in DCM (60 ml.) was added dropwise over 30 minutes to a stirred solution of 2,4-dichloropyrimidine-5-carbonyl chloride (compound 2) (9.34 g, 44.2 mmol) in DCM (242 ml.) at 0 C. The reaction mixture was stirred for 2 h at 0 C and then quenched with H20. The phases were separated and the organic phase washed with 0.5 M HCI, H20, dried over Na2S04 and then evaporated under reduced pressure. The residue was purified by flash column chromatography (Cyclohexane/EtOAc 6/4 to 4/6) to give desired (2,4- dichloropyrimidin-5-yl)(2-methylmorpholino)methanone (compound 3) as a colourless oil which solidified on standing (11.02 g, 90% yield). It will be appreciated by the skilled artisan that the above reaction may be carried out using 2-methylmorpholine hydrochloride salt (Intermediate B, hydrochloride salt), in which case an extra one equivalent of base (DIPEA) may be used in the reaction. Alternatively, 2-methylmorpholine hydrochloride salt may be converted to 2-methylmorpholine free base by treatment with a suitable base (e.g. DIPEA) prior to being employed in the reaction. MS (+ve ion electrospray): m/z 276 [MH+] | |
| With phosphorus pentachloride; at 80 - 105℃; | The starting material Compound G was introduced in the reactor with POC13 and about 3 equivalents of PC15. In this case POC13 acted as solvent due to the very low solubility of Compound G in many organic solvents. The reaction temperature was increased from 80 C to 105 C in 3 hrs and then left at 105 C for additional 1-2 hrs. When the reaction completed, POC13 was distilled. Toluene was added to the residue and distilled in order to reduce the amount of POC13. Crude Compound F-i was distilled at around 7-8 mbar, with ajacketed temperature of about 130-13 5 C. Average yield 72% and average purity 94.9 % by GC-FID. |

| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 81% | In tetrahydrofuran; at 20℃;Cooling with ice; | 21 g (100 mmol, 1.0 eq) of 2,4-dichloropyrimidine-5-formyl chloride was dissolved in 150 mL of anhydrous tetrahydrofuran, and 13.2 g (110 mmol, 2.2 eq) of isopropanol was slowly added dropwise under an ice bath,After the addition, the reaction system was warmed to room temperature overnight.The solvent was evaporated to dryness under reduced pressure, and the residue was purified by silica gel column chromatography to obtain the product (18.3 g, yield = 81%). |
| In tetrahydrofuran; at -40 - 20℃; for 2h; | To a precooled SOLUTION (-40C) of 2, 4-dichloropyrimidine-5-carbonyl chloride (5 ML) in tetrahydrofuran (20 ml) isopropanol (2.6 ml) was added dropwise. Then the reaction mixture was allowed to come to room temperature and stirred for 2h. After evaporation the residue was chromatographed on silica gel (dichloromethane/ethyl acetate) to yield the title compound (8.2 G). 1H NMR (300 MHz, CD03) : A/PPM = 1.40 (d, 6H, J = 7 Hz), 5.31 (m, 1 H), 9.0 (s, 1H) | |
| In tetrahydrofuran; at -78 - 20℃; | A solution of 2,4-dichloropyrimidine-5-carbonyl chloride (2.00 g, 9.45 mmol) in THF (4.7 mL) was cooled to -78 C before IPA (0.80 mL) was added. The mixture was warmed to rt and stirred overnight. The mixture was then concentrated in vacuo and purified by flash column chromatography on silica gel (0%? 10% EtOAc/heptane) to afford isopropyl 2,4-dichloropyrimidine- 5-carboxylate (A7) as a colorless oil. |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 90% | With triethylamine; In tetrahydrofuran; | Method 79 5-N-t-Butylcarbamoyl-2,4-dichloropyrimidine. A solution of 2,4-dichloro-5-chloroformylpyrimidine (Method 31; 9.8 g, 46.3 mmol) in dry THF (50 ml) was cooled to -15 C. t-Butylamine (5.2 ml, 49.3 mmol) and triethylamine (6.9 ml, 49.5 mmol) in dry THF (20 ml) were added slowly so as to maintain the temperature below -10 C. The resulting mixture was stirred at -10 C. for 2 hours, allowed to warm to ambient temperature and stirred for a further 30 minutes. The precipitate was removed by filtration and the filtrate evaporated to give a viscous oil, and then evaporated under high vacuum to give the title compound as a solid (10.48 g, 90%). NMR: 1.49 (s, 9H), 6.19 (brs, 1H), 8.86 (s, 1H); m/z: 248. |
| 85% | With triethylamine; In chloroform; at 0℃; for 1h; | 100 g of 2,4-dichloro-5-pyrimidinyl chloride is dissolved in 800 g of anhydrous chloroform,Add 95 grams of triethylamine, lower the temperature to 0 C, and add 38 grams of tert-butylamine dropwise.After the addition, the reaction was held at 0 C for 1 hour.100 g of compound 2,4-dichloro-5-pyrimidine tert-butyramide was obtained by filtration,The measured purity is greater than 98% and the yield is 85%; |
| 50% | With triethylamine; In tetrahydrofuran; at -15 - 20℃; for 3h; | 4b Production of 2,4-Dichloro-pyrimidine-5-carboxylic acid-tert-butylamide A solution of 24.85 g (117.5 mmol) of 2,4-dichloro-pyrimidine-5-carbonyl chloride in 125 ml of THF is cooled to -15 C. It is slowly mixed with a solution of 13.2 ml (124.5 mmol) of tert-buylamine and 17.4 ml (125.7 mmol) of triethylamine in 50 ml of THF, so that the temperature of the reaction mixture remains less than -10 C. It is stirred for another 2 hours at -10 C., then the cooling bath is removed, and the reaction mixture is heated to room temperature while being stirred. After 1 hour, the precipitate that is formed is filtered off, and the filtrate is completely concentrated by evaporation. The residue that is obtained is purified by chromatography (hexane/ethyl acetate 4:1). 14.01 g (56.6 mmol, corresponding to 50% of theory) of the product is obtained. 1H-NMR (DMSO): 8.81 (s, 1H), 8.34 (s, 1H), 1.36 (s, 9H) |
| With triethylamine; In tetrahydrofuran; at -7 - 20℃; for 4h; | Preparation of 2,4-dichloro-pyhmidine-5- tert-butylcarboxamide (Vl):; A solution of 13,7 ml (129 mmol) terf.-butylamine and 17,9 ml (129 mmol) triethylamine in 163 ml THF is added dropwise under argon over a period of 70 minutes to a solution of 26,0 g (123 mmol) 2,4-dichloro-pyrimidine-5- carbonyl chloride at -7C to -3C. The mixture is kept at this temperature for 4 hours and then slowly warmed to room temperature. The precipitate that forms is filtered off and the filtrate concentrated to dryness. 32,6 g of the product, which is used without further purification, is obtained. 1H-NMR (DMSO): 8.79 (s, 1 H), 8.29 (s, 1 H), 1.32 (s, 9H). | |
| With triethylamine; In tetrahydrofuran; at -7 - -3℃; for 5.16667h; | A solution of 13,7 ml (129 mmol) tert.-butylamine and 17,9 ml (129 mmol) triethylamine in 163 ml THF is added dropwise under argon over a period of 70 minutes to a solution of 26,0 g (123 mmol) 2,4-dichloro-pyrimidine-5-carbonyl chloride at -7 C. to -3 C. The mixture is kept at this temperature for 4 hours and then slowly warmed to room temperature. The precipitate that forms is filtered off and the filtrate concentrated to dryness. 32,6 g of the product, which is used without further purification, is obtained. 1H-NMR (DMSO): 8.79 (s, 1H), 8.29 (s, 1H), 1.32 (s, 9H). |

| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 84% | With phosphorus pentachloride; trichlorophosphate; at 115℃; for 5h; | 4a Production of 2,4-Dichloro-pyrimidine-5-carbonyl Chloride A suspension of 21.7 g (139 mmol) of 2,4-dihydroxy-5-carboxylic acid-pyrimidine, 96.7 g (463 mmol) of phosphorus pentachloride and 33 ml (348 mmol) of phosphoroxyde chloride is stirred for 5 hours at 115 C. After cooling, the reaction mixture is concentrated by evaporation in a rotary evaporator. The residue that is formed is purified by vacuum distillation (Kp 0.1 mbar: 68 C.). |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| With Amberlyst A-21 ion exchange resin; In ethyl acetate; at 20 - 50℃; | Amberlyst A-21 ion exchange resin (1. 8 g) was added to a solution of 2,4- DICHLOROPYRIMIDINE-5-CARBONYL chloride (18.3 g, 86. 6 mmol) in ethyl acetate (400 mL). More ethyl acetate (50 mL) was added and 2,6-dimethylaniline (10.5 g, 10.7 mL, 86. 6 mmol) was added dropwise at room temperature. The reaction mixture was heated at 50 C overnight then cooled and quenched with water and extracted extracted with ethyl acetate (3 x 100 mL). The organic layer was washed with 1 N HC1 (30 mL), 1 M NaOH (30 mL) and brine (30 mL). The organic layer was then dried on sodium sulfate, filtered and concentrated in vacuo. The crude product was washed with dichloromethane (2 X 30 ML) to afford the title compound as a pale yellow solid NMR (400 MHz, CDC13) : 9. 08 (1H, s), 7.71 (1H, s), 7.15-7. 23 (3H, m), 2.32 (6H, s); 13C NMR (400 MHz, CDC13) : 19.12, 127.56, 128. 78, 129.00, 132.75, 135.81, 158. 61,160. 25,162. 23,162. 41; MS: 296 [M+H+] | |
| With Amberlyst A21; In ethyl acetate; at 20 - 50℃; for 12h; | To a mixture of 20.3 g (96 mmol) of <strong>[2972-52-3]2,4-dichloropyrimidine-5-carbonyl chloride</strong> 29 and Amberlyst A21 (2.Ig) in 400 mL of EtOAc was added dropwise 11.7 mL of 2,6- dimethylaniline (95 mmol) at room temperature. The resulting mixture was heated to 50C for 12 h, and then was filtered. The filtrate was washed sequentially with water (200 mL), IN HCl (50 mL), IN NaOH (50 mL), and brine (100 mL). The combined organic layers were dried over Na2SO4, filtered, and the filtrate was washed with a small amount of DCM to give the title compound as a white solid. Mass Spectrum (ESI) m/e = 297.1 (M+l). |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| With Amberlyst A-21 ion exchange resin; In ethyl acetate; at 60℃; | Amberlyst A-21 ion exchange resin (2.14 g) was added to a solution of 2,4- dichloropyrimidine-5-carbonyl chloride (21.4 g, 101.2 mmol) in ethyl acetate (200 mL). The mixture was heated at 60 C. A solution of 2, 6-dichloro aniline (19.68 g, 121. 5 mmol) in ethyl acetate (200 mL) was added dropwise and the reaction mixture was heated at 60 C overnight. The mixture was quenched with water and the organic layer extracted with ethyl acetate (3 x 100 mL), washed with 1 N HC1 (30 mL), 1 M NAOH (30 mL) and brine (30 mL). The organic layer was then dried on sodium sulfate, filtered and concentrated in vacuo. The crude product was washed with dichloromethane (2 x 30 mL) to afford 2, 4-dichloro-5-N- [2, 6- DICHLOROPHENYL] PYRIMIDINE as a pale yellow solid NMR (400 MHz, CDC13) : 10. 88 (1H, s), 9.01 (1H, s), 7.63 (2H, d, J 8.1 Hz), 7.44 (1H, t, J 8. 1 Hz); 13C NMR (400 MHZ, CDC13): 128. 5,128. 7, 130. 0, 131.32, 133.5, 158. 8,159. 5,159. 9, 160. 3; MS : 336 [M+H+] |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 78% | With triethylamine; In tetrahydrofuran; | Method 32 5-N-t-Butylcarbamoyl-2-chloro-4-morpholinopyrimidine. A solution of 2,4-dichloro-5-chloroformylpyrimidine (Method 31; 500 mg, 2.36 mmol) in dry THF (5 ml) was cooled to -15 C. t-Butylamine (250 l, 2.36 mmol) and triethylamine (330 l, 2.36 mmol) in dry THF were added slowly so as to maintain the temperature below -10 C. The resulting mixture was stirred at -10 C. for 2 hours, allowed to warm to ambient temperature and stirred for a further 30 minutes. Morpholine (208 l, 2.36 mmol) and triethylamine (330 l, 2.36 mmol) in dry THF (1 ml) were added and the resulting mixture was stirred at room temperature for 12 hours. The precipitate was removed by filtration and the filtrate evaporated to give the title compound as a pale yellow solid (570 mg, 78%). NMR: 1.30 (s, 9H), 3.52-3.58 (m, 4H), 3.60-3.67 (m, 4H), 8.00 (s, 1H), 8.21 (brs, 1H); m/z: 299. |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| With triethylamine; In tetrahydrofuran; | Method 10 2,4-Dichloro-5-(N-isopropylcarbamoyl)pyrimidine A solution of isopropylamine (1.28 ml, 15.0 mmol) and triethylamine (2.10 ml, 15.1 mmol) in dry THF (5 ml) was added dropwise over 30 minutes to a solution of <strong>[2972-52-3]2,4-dichloropyrimidine-5-carbonyl chloride</strong> (obtained as described in J. Med. Chem., 1972, 15, 200; 3.18 g, 15.0 mmol) in dry THF (8 ml) at -10 C. The solution was stirred 0 C. for 2 hours, filtered and evaporated to dryness to yield the product (0.93 g), which was used without further purification. |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| With N-ethyl-N,N-diisopropylamine; In tetrahydrofuran; at 0℃; for 3.5h; | To a solution of the 2,4-dich.oropyrimidine-5-carbonyl chlorode (5.1 mmol) in THF (10 ml) are added allyl alcohol (5.1 mmol) and DIEA (A/,/V-diisopropylethylamine) (6.1 mmol) at 0 C. After stirring at 0 C for 3.5 h, the reaction mixture is filtered and the filtrate is concentrated in vacuo. The resulting residue is purified by silica gel column chromatography to give the title compound; 1H NMR (CDCI3) 6 4.87-4.89 (m, 2H), 5.35-5.48 (m, 2H), 5.97-6.08 (M, 1H), 9.05(s, |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 61% | Example 40 2,4-DICHLORO-5-N-[3',5'-BIS(TRIFLUOROMETHYL)BENZYL]PYRIMIDINE-5-CARBOXAMIDE The title compound was prepared as described in Example 1, but employing 2,4-dichloropyrimidine-5-carbonylchloride (0.10 g, 0.40 mmol) and 3,5-bistrifluoromethylbenzylamine (0.10 g, 0.45 mmol) to give the compound in a 61% yield (0.12 g); m.p. 144-145 C. |

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