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CAS No. : | 31519-62-7 | MDL No. : | MFCD00856161 |
Formula : | C5H4N2O2 | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | ZFCHNZDUMIOWFV-UHFFFAOYSA-N |
M.W : | 124.10 | Pubchem ID : | 12626245 |
Synonyms : |
|
Num. heavy atoms : | 9 |
Num. arom. heavy atoms : | 6 |
Fraction Csp3 : | 0.0 |
Num. rotatable bonds : | 1 |
Num. H-bond acceptors : | 4.0 |
Num. H-bond donors : | 1.0 |
Molar Refractivity : | 28.99 |
TPSA : | 63.08 Ų |
GI absorption : | High |
BBB permeant : | No |
P-gp substrate : | No |
CYP1A2 inhibitor : | No |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -7.45 cm/s |
Log Po/w (iLOGP) : | 0.58 |
Log Po/w (XLOGP3) : | -0.55 |
Log Po/w (WLOGP) : | 0.17 |
Log Po/w (MLOGP) : | -0.85 |
Log Po/w (SILICOS-IT) : | 0.32 |
Consensus Log Po/w : | -0.06 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 1.0 |
Bioavailability Score : | 0.56 |
Log S (ESOL) : | -0.69 |
Solubility : | 25.3 mg/ml ; 0.204 mol/l |
Class : | Very soluble |
Log S (Ali) : | -0.31 |
Solubility : | 61.5 mg/ml ; 0.495 mol/l |
Class : | Very soluble |
Log S (SILICOS-IT) : | -0.98 |
Solubility : | 12.9 mg/ml ; 0.104 mol/l |
Class : | Soluble |
PAINS : | 0.0 alert |
Brenk : | 0.0 alert |
Leadlikeness : | 1.0 |
Synthetic accessibility : | 1.18 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H315-H319-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
35.4% | Stage #1: With potassium hydroxide In water for 3 h; Reflux Stage #2: With hydrogenchloride In water at 20℃; |
Pyrimidine-2-carboxylic acid (11):To a stirred solution of pyrimidine-2-carbonitrile (10) (201 mg, 1.914 mmol) in water (5 mL), KOH (214.3 mg, 3.83 mmol) was added and the reaction was refluxed for 3 h. After consumption of the starting material (by TLC), the reaction was slowly brought to RT, neutralized with 2N HC1 and water was removed from the reaction mixture to give the crude residue which was extracted with EtOAc. The combined organic extracts were filtered through a pad of celite and the filtrate was concentrated under reduced pressure to provide compound 11 (84 mg, 35.4percent) which was carried for the next step without any purification.TLC: 80percent EtOAc/Hexane (Rf: 0.05)1H NMR (400MHz, CD3OD-d4): δ 8.83 (br s, 2H), 7.47 (t, J = 4.8 Hz, 1H). |
0.10 g | at 70℃; for 0.5 h; | To the flask was added 0.10g of 2cyanopyrimidine,12percent by mass aqueous sodium hydroxide solution 13mL was stirred at 70 30 minutes. Of 1N dilutehydrochloric acid to pH ~ 3 by adding little by little and, by concentration of the resulting organic layer was extracted three times with 10mL of ethyl acetate, to give0.10g of Compound A218 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
99% | With thionyl chloride; In dichloromethane; at 40℃; for 1h; | A flask was charged with <strong>[31519-62-7]pyrimidine-2-carboxylic acid</strong> (63.2 mg, 0.509 mmol, 1.00 equiv), DCM (5 mL), and thionyl chloride (121 mg, 1.02 mmol, 2.00 equiv). The resulting solution was stirred for 1 h at 40 C. The resulting mixture was concentrated under reduced pressure to provide 72.0 mg (99% yield) of pyrimidine-2-carbonyl chloride. |
With thionyl chloride; at 110℃; for 1.5h; | 2-Pyrimidinecarboxylic acid (350mg) in thionyl chloride (3ml_) was stirred at 1 10C under nitrogen for 1.5h. The solvent was removed under vacuum to give the 2-pyrimidinecarbonyl chloride as a grey solid (403mg). (4-Bromo-2-fluorophenyl)(iodo)zinc in 25 tetrahydrofuran (0.5M, 5.65mL) was added slowly to a stirred mixture of the acid chloride (403mg) and tetrakis(triphenylphosphine)palladium(0) (163mg) in tetrahydrofuran (3rnl_) at room temperature under nitrogen. The reaction mixture was stirred at room temperature under nitrogen for 1h and aqueous ammonium chloride (1M, 6ml_) was added. The mixture was absorbed onto silica and purified by chromatography on a silica column, eluting with a cyclohexane/ethyl acetate gradient to give the title compound (257mg). LC-MS: Rt 2.95min. | |
With thionyl chloride; at 110℃; for 1.5h; | Pyrimidine-2-carboxylic acid 3 (0.3 lOg, 2.5 mmol) was charged to a vial. Thionyl chloride (3ml, 41.1 mmol) was added while the mixture was stirred. After addition, the reaction was heated to 1 10 C for 1.5hr to afford a green-colored solution. At this time the heat was removed and the reaction mixture was concentrated in vacuo. The reaction was diluted with 10 ml of toluene and azeotroped twice before drying under high vacuum. After lhr, the resulting green/gray residue, pyrimidine-2-carbonyl chloride 4, was carried forward to the dione formation step without any further purification. |
With oxalyl dichloride; N,N-dimethyl-formamide; In dichloromethane; at 0 - 20℃; for 3h; | Preparation of Intermediate 25 2211 Intermediate 25 2212 [0255] Oxalyl chloride (2.36 mL, 24.2 mmol, 1.5 eq) and a catalytic quantity of DMF were 2213 added to a solution of <strong>[31519-62-7]pyrimidine-2-carboxylic acid</strong> (2 g, 16.1 mmol) in dry DCM (30 mL) at 2214 0 C. The resulting mixture was allowed to warm to RT and stir for 3 h. The volatiles were 2215 removed in vacuo and the residue was thoroughly dried to afford pyrimidine-2-carboxylic 2216 acid chloride (2.1 g, 14.8 mmol) as a black solid. The crude material was added portion- wise 2217 to a solution of aminogaunidine sulfate (5.5 g, 22.2 mmol, 1.5 eq) in pyridine (20 mL) at 2218 0 C. The resulting mixture was allowed to warm to RT and stir for 14 h. The mixture was 2219 then neutralized with saturated aqueous NaHCOs, extracted with t-BuOH (5 x 50 mL), dried 2220 over Na2S04, filtered and concentrated in vacuo. The crude material was dissolved in water 2221 (45 mL) and the resulting solution was heated to 100 C for 24 h. The reaction mixture was 2222 then cooled to RT, extracted with t-BuOH (5 x 30 mL), dried over Na2S04, filtered and 2223 concentrated in vacuo to afford Intermediate 25 (650 mg, 25 %) as off-white solid. TLC: 30% 2224 MeOH in CHC13: Rf: 0.20. | |
With oxalyl dichloride; N,N-dimethyl-formamide; In dichloromethane; at 0 - 20℃; for 3h; | Oxalyl chloride (2.36 mL, 24.2 mmol, 1.5 eq) and a catalytic quantity of DMF were added to a solution of <strong>[31519-62-7]pyrimidine-2-carboxylic acid</strong> (2 g, 16.1 mmol) in dry DCM (30 mL) at 0C. The resulting mixture was allowed to warm to RT and stir for 3 h. The volatiles were removed in vacuo and the residue was thoroughly dried to afford <strong>[31519-62-7]pyrimidine-2-carboxylic acid</strong> chloride (2.1 g, 14.8 mmol) as a black solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
PREPARATION 105 1-(1H-Benzo[d]imidazol-2-ylsulfonyl)-N'2-[(2-pyrimidinylcarbonyl)oxy]-2-piperidinecarboximidamide The title compound was prepared by a similar method to Preparation 20 from (Z)-1-(1H-benzo[d]imidazol-2-ylsulfonyl)-N'2-hydroxy-2-piperidinecarboximidamide [see Preparation 19] and <strong>[31519-62-7]pyrimidine-2-carboxylic acid</strong> (see Chem. Ind. (London), 1954, 786) to afford 1-(1H-benzo[d]imidazol-2-ylsulfonyl)-N'2-[(2-pyrimidinylcarbonyl)oxy]-2-piperidinecarboximidamide as a gum. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In methanolic hydrogen chloride; ethyl acetate; | EXAMPLE 5E This example illustrates the esterification of a pyrimidine carboxylic acid to the corresponding carboxylic ester. Compound No. 82 (see Example 5D) (0.19 g) was added in methanolic hydrogen chloride (5 cm3 of a saturated solution) and the flask was stoppered and left to stand for 72 hours. All the solid starting material had dissolved. The solution was evaporated to dryness at reduced pressure and the residue was dissolved in ethyl acetate. The organic solution was washed with saturated aqueous sodium bicarbonate and dried over magnesium sulfate. Evaporation of solvent under reduced pressure gave an oil which was chromatographed on silica gel, eluding with 1:4 ethyl acetate:hexane to give methyl 2-[(4,4-difluoro-3-butenyl)thio]-4-pyrimidinecarboxylate (Compound No. 83) (0.154 g). M+ =260; 1 H NMR (CDCl3): delta2.40-2.54(2H m); 3.24(2H,t); 4.00(3H,s); 4.22-4.40(1H,m); 7.64(1H,d); 8.74(1H,d). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
To a solution of <strong>[31519-62-7]pyrimidine-2-carboxylic acid</strong> (10.46 g, 46.8 mmol) in DMA (200 mL) was added EDC (8.98 g, 46.8 mmol) and HOBt (7.17 g, 46.8 mmol) and the reaction mixture was stirred at 60C for 1 hour. Then tert-butyl {2-[4-(5-hydrazino-3-phenyl-l,6- naphthyridin-2-yl)phenyl]-5,8-dioxaspiro[3.4]oct-2-yl}carbamate (1-10) (25.27 g, 46.8 mmol) was added and the reaction stirred at 60C for an additional 2 hours at which time acetic acid (20.8 g, 460 mmol) was added and the reaction was stirred overnight at 80C. The reaction mixture was cooled to rt, quenched with IN NaOH, poured into saturated sodium bicarbonate, extracted with chloroform, dried over sodium sulfate, filtered and concentrated. The crude residue was purified by column chromatography eluting with 10% methanol in DCM. The appropriate fractions were concentrated and the resulting solid was recrystallized from methanol to give tert-butyl {2-[4-(9-phenyl-3-pyrimidin-2-yl[l,2,4]triazolo[3,4-/]-l,6-naphthyridin-8- yl)phenyl]-5,8-dioxaspiro[3.4]oct-2-yl}carbamate (3-1) as a white solid. MS (M+H+): 628 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
tert-butyl{1-[4-(9-phenyl-3-pyrimidin-2-yl[1,2,4]triazolo[3,4-f]-1,6-naphthyridin-8-yl)phenyl]cyclobutyl}carbamate (1-6d) To a round bottom flask was added tert-butyl{1-[4-(5-hydrazino-3-phenyl-1,6-naphthyridin-2-yl)phenyl]cyclobutyl}carbamate (1-6) (267 mg, 0.554 mmol), EDC (138 mg, 0.721 mmol), HOBt (97 mg, 0.721 mmol), <strong>[31519-62-7]pyrimidine-2-carboxylic acid</strong> (89 mg, 0.721 mmol), DIPEA (0.367 mL, 2.218 mmol), and DMF (3 mL). The reaction mixture was then capped & heated under microwave irradiation at 100 C. for 5 minutes. The mixture was cooled, acetic acid (0.476 mL, 8.32 mmol) was added and the reaction was then capped & heated under microwave irradiation at 80 C. for 5 minutes. The reaction mixture was permitted to cool to room temperature, suspended in ethyl acetate, washed with a saturated solution of sodium bicarbonate, followed by water, brine, dried over sodium sulfate, filtered, and concentrated in vacuo. The resulting residue was purified by silica gel chromatography 0-10% IPA/DCM. The appropriate fractions were combined and the solvent was removed in vacuo to give tert-butyl{1-[4-(9-phenyl-3-pyrimidin-2-yl[1,2,4]triazolo[3,4-f]-1,6-naphthyridin-8-yl)phenyl]cyclobutyl}carbamate (1-6d) as an orange solid. MS (M+H)+: observed=570.2, calculated=570.7. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
77% | Ethyl 3-oxo-3-pyrimidin-2-ylpropanoate To a solution of <strong>[31519-62-7]pyrimidine-2-carboxylic acid</strong> (0.99 g, 7.98 mmol) in anhydrous THF (20 ml) was added carbonyl diimidazole (1.55 g, 9.57 mmol) and the suspension was heated at reflux for 2 hours. The mixture was then cooled to room temperature and used without workup or purification. In a separate flask, mono-ethyl malonate (0.94 ml, 7.98 mmol) was suspended in anhydrous THF (20 ml) and cooled to 0 C. Methyl magnesium bromide (5.32 ml, 15.96 mmol, 3.0 M in diethyl ether) was added dropwise. After stirring at 0 C. for 20 mins, the crude imidazolide solution prepared earlier was added slowly. The reaction was then heated at reflux overnight. After cooling to room temperature, the reaction mixture was diluted with water and acidified with concentrated HCl to pH 5. The solution was extracted with EtOAc (*3), dried with MgSO4 and concentrated to a yellow oil (1.19 g, 77%). NMR showed a 2:1 mixture of the keto:enol forms. MS (ES) (M+H)+: 195 for C9H10N2O3; NMR: 1.13-1.29 (t, 3H), 4.05-4.28 (q, 2H), 4.18 (s, 2H), 7.62-7.76 (t, 1H), 8.95-9.06 (d, 2H), 11.79 (s, 4H) |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
29% | The corresponding aryl-carboxylic acid (n mmol) was taken up in thionyl chloride (n x 1.05 mL) and refluxed for 4h. Excess thionyl chloride was removed under reduced pressure and replaced with pyridine (n x 0.52 mL). While chilled on ice bath 4-ethyl-3- thiosemicarbazide was added portion-wise (1 equivalent, rinsed/scraped in with n x 0.16 mL/mmol dichloromethane). The ice bath was removed and the reaction mixture was stirred at room temperature for 24h. The pyridine was removed under reduced pressure and replaced with aq. NaOH (IN, n x 3.16 mL) and the resulting mixture was stirred at 70-80 0C for 4 hours. After cooling to room temperature, methyl iodide (1.5eq.) in ethanol (n x 0.42 mL) was added dropwise over 20 minutes. The reaction mixture was stirred at room temperature for 16h. The product was extracted with dichloromethane (2x (n x 4.2 mL)). <n="21"/>Removal of the solvent in vacuo and flash chromatography (silica gel, 3% methanol in chloroform) yielded the title compound. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
38% | With bis-(2-oxo-3-oxazolidinyl)phosphoryl chloride; triethylamine; In dichloromethane; at 20℃; for 48h; | [00406] Step A: A solution of 5-bromo-4-fluoro-lH-pyrrolo[2,3-b]pyridin-3-amine (200 mg, 0.869 mmol, Example 1, Step H) in CH2CL (10 mL) was treated with pyrimidine-2- carboxylic acid (129 mg, 1.04 mmol), bis(2-oxooxazolidin-3-yl)phosphinic chloride (332 mg, 1.30 mmol) and triethylamine (440 mg, 4.35 mmol). The reaction was stirred at room temperature for 48 hour, and then water (10 mL) was added. The reaction was stirred for 1 hour. The solid which separated was filtered and washed with CH9CL (10 mL). The filtered cake was dried to yield N-(5-bromo-4-fluoro-lH-pyrrolo[2,3-b]pyridin-3-yl)pyrimidine-2-carboxamide (110 mg, 38% yield). 1H NMR (400 MHz, (CD3^SO) delta 12.21 (br s, IH), 10.47 (s, IH), 9.06 (d,2H), 8.40 (d, IH), 7 87 (d, IH), 7.77 (t, IH); LCMS (APCI+) m/z 335.9, 337.9 (M+H)+, Retention time = 2.70 minutes (Method 2). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
64% | With N-ethyl-N,N-diisopropylamine; HATU; In N,N-dimethyl-formamide; at 20℃; for 18h; | Example 2. General amide coupling procedure to prepare N-(2-(3- (trifluoromethyl)phenyl)imidazo[l,2-a]pyridin-8-yl)pyrimidine-2-carboxamide (Compound 122) and related analogs:; 2-(3-(Trifluoromethyl)phenyl)imidazo[l)2-a]pyridin-8-amine (14; 50 mg, 0.15 mmol) and <strong>[31519-62-7]pyrimidine-2-carboxylic acid</strong> (15; 18 mg, 0.18 mmol) were taken up in <n="71"/>dimethylformamide (DMF; 2 ml). To this mixture was added 2-(7-Aza- 1 H-benzotriazole- l-yl)-lX3,3-tetramethyluronium hexafluorophosphate (HATU; 118 mg, 0.31 mmol) and N,N-Diisopropylethylamine (DIPEA; 80 mg, 0.62 mmol). The resulting reaction mixture was stirred at room temperature for 18 h. Water and aqueous NaHCO3 were then added. The resulting precipitate was collected by filtration, washed with MeOH and dried to afford the desired product, namely N-(2-(3-(trifluoromethyl)phenyl)imidazo[l,2-a]pyridin- 8-yl)pyrimidine-2-carboxamide (Compound 122) (35 mg, yield: 64%). Analytically pure sample could be obtained by additional purification using silica gel chromatography. MS (ESI) calculated for C19H12F3N5O 383.10; found 384 [M+H]. This general amide coupling procedure is used to prepare a variety of imidazo[l,2- ajpyridine derivatives by substituting the appropriate carboxylic acid components. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
9% | Example 67; (R)-N-(5-(2-(2,5-difluorophenyl)pyrrolidin-l-yl)pyrazolo[l,5-alpyrimidin-3- yl)pyrimidine-2-carboxamide; [00483] To a mixture of (R)-5-(2-(2,5-difluorophenyl)pyrrolidin-l-yl)pyrazolo[l,5- a]pyrimidin-3 -amine (Preparation B; 25 mg, 0.079 mmol), <strong>[31519-62-7]pyrimidine-2-carboxylic acid</strong> (12 mg, 0.095 mmol), and HATU (36 mg, 0.095 mmol) was added 0.6 mL DMF. A few drops of DMSO were added to obtain a solution. After cooling in an ice bath for 10 minutes, DIEA (0.041 mL, 0.24 mmol) was added to the reaction drop-wise. The reaction was allowed to warm up to ambient temperature and stirred for one hour, then at 80 0C for 16 hours. Reaction did not reach completion before workup. The reaction mixture was diluted with EtOAc (15 mL), washed with water and brine (5 mL each), concentrated, and purified by reverse-phase column chromatography, eluting with 5 to 60% acetonitrile/water to yield the final product as a light yellowish solid (3 mg, 9% yield). MS (apci) m/z = 422.2 (M+H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
35.4% | Pyrimidine-2-carboxylic acid (11):To a stirred solution of pyrimidine-2-carbonitrile (10) (201 mg, 1.914 mmol) in water (5 mL), KOH (214.3 mg, 3.83 mmol) was added and the reaction was refluxed for 3 h. After consumption of the starting material (by TLC), the reaction was slowly brought to RT, neutralized with 2N HC1 and water was removed from the reaction mixture to give the crude residue which was extracted with EtOAc. The combined organic extracts were filtered through a pad of celite and the filtrate was concentrated under reduced pressure to provide compound 11 (84 mg, 35.4%) which was carried for the next step without any purification.TLC: 80% EtOAc/Hexane (Rf: 0.05)1H NMR (400MHz, CD3OD-d4): delta 8.83 (br s, 2H), 7.47 (t, J = 4.8 Hz, 1H). | |
0.10 g | With water; sodium hydroxide; at 70℃; for 0.5h; | To the flask was added 0.10g of 2cyanopyrimidine,12% by mass aqueous sodium hydroxide solution 13mL was stirred at 70 30 minutes. Of 1N dilutehydrochloric acid to pH ~ 3 by adding little by little and, by concentration of the resulting organic layer was extracted three times with 10mL of ethyl acetate, to give0.10g of Compound A218 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In chloroform; at 40℃; for 2h;Product distribution / selectivity; | Compound 1-20 was synthesized as a white solid (10 % yield over 3 steps) using 5,5-dimethylcyclohexane-l,3-dione in step 1 and 2-fluorobenzyl bromide in step 3. [NOTE: In the first step, the electrophile was formed in situ from CDI (1.05 eq) and pyrimidine-2- carboxylic acid (1.0 eq) in CHCI3 at 40 C for 2 h, then was directly subjected to 5,5- dimethylcyclohexane-l,3-dione (1.0 eq) and DMAP (1.0 eq) for 14 h at 80 C to form desired adduct.]1H NMR (400 MHz, CDC13) delta 8.90 (d, 2H), 7.32-7.29 (m, 1H), 7.30 (t, 1H), 7.12-7.07 (m, 3H), 5.46 (s, 2H), 2.69 (s, 2H), 2.45 (s, 2H), 1.12 (s, 6H) ppm. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
3.2% | Example 58: Saturated sodium hydrogen carbonate (10 mL) was added to compound I E (106 mg, 0.29 mmol) in dichloromethane (10 mL) and left to stir at room temperature for 5 min. The organic material was extracted into dichloromethane (3 x 10 mL), dried with anhydrous potassium carbonate, and concentrated in vacuo. This was combined with <strong>[31519-62-7]pyrimidine-2-carboxylic acid</strong> (45 mg, 0.38 mmol), HBTU (164 mg, 0.43 mmol) and DIPEA (77.8 mu,, 0.45 mmol) in DMF (6 mL) and placed in the orbital shaker overnight. The resulting solution was diluted with dichloromethane and washed with a saturated aqueous solution of sodium hydrogen carbonate and water. The organic layer was dried with anhydrous magnesium sulphate, filtered, and concentrated in vacuo to yield a yellow oil. This oil was purified using HPLC to yield compound 58 as a yellow solid (3.7 mg, 3.2%). LCMS (+esi): 403.1 (M+H+), RT = 6.80 min. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
N-((4R,5S,6S,Z)-5-((tert-butyldimethylsilyl) oxy)-6-methoxy-2,4-dimethylocta-2,7-dien-l-yl) pyrimidine-2-carboxamide (35):To a stirred solution of compound 11 (20 mg, 0.16 mmol) in dry DMF (1 mL) at 0C,DIPEA (148.6 mL, 0.81 mmol) followed by HATU (91.93 mg, 0.242 mmol) were added underN2 atmosphere and stirred for 10 min. Compound 34 (62.9 mg, 0.193 mmol) was added to the reaction mixture and stirred at RT 16 h. The reaction was diluted with water and extracted with EtOAc (3 x 10 mL). The combined organic extracts was dried over anhydrous Na2S04, filtered and concentrated under reduced pressure to give the crude residue (180mg) which was carried forward for the next step without purification.TLC: 100% EtOAc (Rf: 0.5) Mass (ESI): 420 (M++l).LC-MS: mlz = 420.7 [(M++l)] at RT 5.54 (13.3% purity) & 420.6 [(M++l)] at RT 5.81 (46% purity). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
With 1-[(1-(cyano-?2-?ethoxy-?2-?oxoethylidenaminooxy)?dimethylamino-?morpholino)]-uronium hexafluorophosphate; triethylamine; N,N-dimethyl-formamide; at 150℃; for 0.0833333h;Microwave irradiation; | Example 2 (Compound 2) N-[2-[ l-[4-chloro-3-(trifluoromethyl)phenyl]pyrazole-4-carbonyl]-4-(l- piperidyl) phenyl] pyri mid ine-2-carboxamide A mixture of (2-amino-5-(l-piperidyl)phenyl)(l-(4-chloro-3-(trifluoromethyl)-phenyl)- lH-pyrazol-4-yl)methanone (Intermediate 1.5) (20 mg, 44.6 umol), 2- carboxypyrimidine (8.2 mg, 66.8 umol), triethyl amine (19 uL, 134 umol) and COMU (29 mg, 66.8 umol) in DMF (500 uL) was heated to 150C for 5 minutes in a microwave oven. The residue was purified by preparative HPLC/MS_method A2 (gradient 30 to 100 % of MeCN in water) to afford the title compound . 1H NMR (DMSO-d6, 300 MHz) delta = 11.92 (s, 1H), 9.37 (s, 1H), 9.03 (d, 2H), 8.51 - 8.35 (m, 1H), 8.35 - 8.18 (m, 1H), 7.93 (d, 1H), 7.73 (t, 1H), 7.53 - 7.03 (m, 2H), 3.36 - 2.99 (m, 2H), 1.86 - 1.39 (m, 6H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
36% | With benzotriazol-1-ol; 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride; N-ethyl-N,N-diisopropylamine; In 1,4-dioxane; at 0 - 20℃;Inert atmosphere; | 113. f-)-2-f(3.,4-trans)-4-methyl-l-fpyrimi(iine-2-carbonyl)pyrroli(iin-3-yl)- 7-ftetrahvdro-2H-pyran-4-yl)imidazo[5,l- 7[l,2,41triazin-4f3H -one [1072] To a stirred solution of (-)-2-((3,4-trans)-4-methylpyrrolidin-3-yl)-7- (tetrahydro-2H-pyran-4-yl)imidazo[5,l- J[l,2,4]triazin-4(3H)-one (125 mg, 0.41 mmol) in 1,4-Dioxane (20 mL) were added EDCI (120 mg, 0.61 mmol), HOBt (84 mg, 0.61 mmol), DIPEA (160 mg, 1.23 mmol) and 2-cyanobenzoic acid (73 mg, 0.49 mmol) at 0 C under argon atmosphere. The resulting reaction mixture was allowed to warm to room temperature and stirred for 16 h. The reaction mass was diluted with water (100 mL) and extracted with DCM (3 x 50 mL). Combined organic layer was dried over sodium sulphate, filtered and concentrated in vacuo to obtain the crude product. The crude material was purified by silica gel column chromatography to afford (-)-2-((3,4-trans)-4-methyl-l-(pyrimidine-2-carbonyl)pyrrolidin-3-yl)-7- (tetrahydro-2H-pyran-4-yl)imidazo[5,l: 7[l,2,4]triazin-4(3H)-one (60 mg, 36%) as an off-white solid. 1H-NMR (DMSO d6, 400 MHz): delta 11.95 (bs, 1H), 8.92 (d, 2H), 7.67 (s, 1H), 7.64-7.61 (m, 1H), 3.98-3.87 (m, 4H), 3.65-3.42 (m, 4H), 3.12-2.97 (m, 2H), 2.68-2.61 (m, 1H), 1.87-1.80 (m, 4H), 1.09 (d, 3H); Mass (ESI): 410 [M++l] LC-MS: 99.89%; 410.3 (M++l); (column; X-bridge C-18, (50x3.0 mm, 3.5mu); RT 1.85 min. 0.05% TFA in water: ACN; 0.8 ml/min); UPLC (purity): 99.48%; (column; Eclipse XDB C-18, (150x4.6 mm, 5.0mu); RT 8.17 min. 5mM NH4OAc (Aq): ACN; 1.0 ml/min; Chiral HPLC: 99.13%, R, = 35.50 min (Chiralpak IA, 250 x 4.6mm, 5mu; mobile phase (A) n-Hexane (B) DCM:MeOH (80:20) (A: B : 80:20); flow Rate: 1.00 mL/min); Optical rotation [a]D2: -12.59 (c = 0.25, DCM). TLC: 10% MeOH/DCM (Rf: 0.6). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
40% | With benzotriazol-1-ol; 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride; N-ethyl-N,N-diisopropylamine; In N,N-dimethyl-formamide; at 0 - 20℃;Inert atmosphere; | 114. f+)-2-f(3.,4-trans)-4-methyl-l-fpyrimi(iine-2-carbonyl)pyrroli(iin-3- yl)-7-ftetrahvdro-2H-pyran-4-yl)imidazo[5,l- 1 [l,2,41triazin-4f3H -one [1073] To a stirred solution of (+)-2-((3,4-trans)-4-methylpyrrolidin-3-yl)-7- (tetrahydro-2H-pyran-4-yl)imidazo[5,l: ][l,2,4]triazin-4(3H)-one (75 mg, 0.24 mmol) in DMF (5 mL) were added EDCI (70 mg, 0.37 mmol), HOBt (50 mg, 0.37 mmol), DIPEA (95 mg, 0.74 mmol) and <strong>[31519-62-7]pyrimidine-2-carboxylic acid</strong> (40 mg, 0.32 mmol) at 0 C under inert atmosphere. The resulting reaction mixture was allowed to warm to room temperature and stirred for 8 h. The reaction mass was diluted with water (100 mL) and extracted with DCM (3 x 50 mL). Combined organic layer was dried over sodium sulphate, filtered and concentrated in vacuo to obtain the crude product. The crude material was purified by silica gel column chromatography to afford (+)-2-((3,4-trans)-4-methyl-l-(pyrimidine-2-carbonyl)pyrrolidin-3-yl)-7- (tetrahydro-2H-pyran-4-yl)imidazo[5,l: ][l,2,4]triazin-4(3H)-one (40 mg, 40%) as an off-white solid. 1H-NMR (DMSO d6, 400 MHz): delta 11.95 (bs, 1H), 8.97 (d, 2H), 6.69- 6.58 (m, 2H), 3.98-3.84 (m, 4H), 3.65-3.57 (m, 4H), 3.22-3.27 (m, 2H), 2.68-2.61 (m, 1H), 1.90-1.84 (m, 4H), 1.08 (d, 3H); Mass (ESI): 410 [M++l] LC-MS: 98.92%; 410.3 (M++l); (column; X-bridge C-18, (50x3.0 mm, 3.5mu); RT 1.85 min. 0.05% TFA in water: ACN; 0.8 ml/min); UPLC (purity): 98.76%; (column; Eclipse XDB C- 18, (150x4.6 mm, 5.0mu); RT 8.23 min. 5mM NH4OAc (Aq): ACN; 1.0 ml/min; Chiral HPLC: 99%, R, = 37.69 min (Chiralpak IA, 250 x 4.6mm, 5mu; mobile phase (A) n- Hexane (B) DCM:MeOH (80:20) (A: B : 80:20); flow Rate: 1.00 mL/min); Optical rotation [a]D2: +12.17 (c = 0.25, DCM). TLC: 10% MeOH/DCM (Rf: 0.5). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
69% | With benzotriazol-1-ol; 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride; N-ethyl-N,N-diisopropylamine; In N,N-dimethyl-formamide; at 20℃; | General procedure: Step A: Following general procedure GP-A2, 2- (2- ( tert- butyl) phenoxy) -W-methylethanamine hydrochloride and pyrimidine-2- carboxylic acid were combined to give N- (2- (2- ( tert- butyl) henoxy ethyl ) -W-methylpyrimidine-2-carboxaitiide as a clear viscous oil (89 mg, 69%); NMR (500 MHz, DMS0-) delta 8.88 (dd, J = 7.5, 5.0 Hz, 2H), 7.60-7.56 (in, 1H) , 7.25-7.16 (m, 1.5H), 7.14-7.09 (m, 0.5H), 7.05 (dd, J = 8.5, 1.0 Hz, 0.5H), 6.91-6.83 (m, 1.5H), 4.24 (t, J = 6.0 Hz, 1H) , 4.12 (t, J = 6.5 Hz, 1H) , 3.93 (t, J = 6.5 Hz, 1H), 3.55 (t, J = 6.5 Hz, 1H) , 3.12 (s, 1.5H), 2.90 (s, 1.5H) , 1.35 (s, 5H) , 1.24 (a, 4H) ; ESI MS m/z 314 [M + H]*. General Procedure (GP-A2) for carboxamide formation: A mixture of amine I (1 equiv) , desired carboxylic acid (1 equiv) , H, N- diisopropylethylamine {i-Pr2NEt) (3 equiv) , l-ethyl-3- (3- dimethylaminopropyl ) carbodiimide (EDCI) (1.5 equiv) and hydroxybenzotriazole (HOBt) (1.5 equiv) in DMF (0.25 M) was stirred at room temperature until the reaction was complete by LC-MS. The mixture was diluted with 0 and extracted with EtOAc. The combined organic extracts were washed with 0, brine, dried over NajS04 , filtered, and concentrated under reduced pressure. The resulting residue was purified by silica gel chromatography (typical eluents included either a mixture of or hexanes and EtOAc or a mixture of CH2CI2 and a 90:9:1 mixture of CH2Cl2/CHiOH/concentrated HH4OH} to afford the desired carboxamide II. The product structure was verified by NMR and by mass analysis. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
76% | With benzotriazol-1-ol; 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride; N-ethyl-N,N-diisopropylamine; In N,N-dimethyl-formamide; at 20℃; | General procedure: General Procedure (GP-A2) for carboxamide formation: A mixture of amine I (1 equiv) , desired carboxylic acid (1 equiv) , N, N- diisopropylethylamine (i-Pr2NEt> (3 equiv), 1-ethyl-3- (3- dirtiethylaminutesopropyl ) carbodiimide (EDC1) (1.5 equiv) and hydroxybenzotriazole (HOBt ) (1.5 equiv) in DMF (0.25 M) was stirred at room temperature until the reaction was complete by TLC or LC-MS. The mixture was diluted with H20 and extracted with EtOAc. The combined organic extracts were washed with 0, brine, dried over Na2S0a, filtered, and concentrated under reduced pressure. The resulting residue was purified by either normal phase silica gel column chromatography (typical eluents included either a mixture of or hexanes and EtOAc or a mixture of CH2CI2 and a 90:9:1 mixture of CH2CI2/CH3OH/concentrated NH4OH) or C-18 reversed phase column chromatography (typical eluents included CCN and H2O) to afford the desired carboxamide II. The product structure was verified by 1H NMR and by mass analysis. Example 21: Pyrimidin-2-yl ( ( 3a. , SR, 6aS) -5- (2- (trifluoromethyl) lopentatc] yrrol-2 (IH) -yl)methanone (36) Step A: Following general procedure GP-A2 , (3aK, 5R, 6aS) -5- (2- (trifluoromethyl) phenyl ) octahydrocyclopent [c] pyrrole hydrochloride and <strong>[31519-62-7]pyrimidine-2-carboxylic acid</strong> were converted to pyrimidin-2- yl ( (3afi, SR, 6aS) -5- (2- (trifluoromethyl) henyl) hexahydrocyclopenta [c] pyrrol-2 (Iff) -yl)methanone as a white solid (127 mg, 76%): mp 84-92 C; KMR (300 MHz, D SO-d6) 5 8.92 (d, J = 8.5 Hz, 2H) , 7.75-7.58 (m, 4H), 7.45-7.36 (m, 1H) , 3.74-3.64 (m, 2H) , 3.55-3.46 (m, IH) , 3.42-3.29 (m, IH) , 3.28-3.21 (m, IH) , 2.94-2.71 (m, 2H) , 2.33-2.21 (m, IH), 2.18-2.07 (m, IH) , 1.65-1.44 (m, 2H) ; MS (ESI+) m/z 362 [M + EtaGamma. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
76% | With benzotriazol-1-ol; 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride; N-ethyl-N,N-diisopropylamine; In N,N-dimethyl-formamide; at 20℃; | General procedure: A mixture of amine I (1 equiv), desired carboxylic acid (1 equiv), N, Ndiisopropylethylamine (i-Pr,HEt) (3 equiv) , l-ethyl-3- (3- dimethylaminutesopropyl) carbodiimide (EI3CI) (1.5 equiv) and hydroxybenzotriazole (HOBt) (1.5 equiv) In DMF (0.25 H) was stirredat room temperature until the reaction was complete by mc or LC-MS. The mixture was diluted with H,O and extracted with EtOAc. The combined organic extracts were washed with H,O, brine, dried over Na,S0,, filtered, and concentrated under reduced pressure. The resulting residue wee purified by either normal phase silica gelcolumn chromatography (typical eluents included either a mixture of or hexanes and EtOAc or a mixture of CH,Cl2 and a 90:9:1 mixture of CH,Cl,/CH,OH/concentrated NH,OH) or C-l8 reversed phase column chromatography (typical eluents included CH,CN and H,O> to afford the desired carboxamide IX. The product structure was verified by ?H NMRand by mass analysis. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
84% | With O-(1H-benzotriazol-1-yl)-N,N,N',N'-tetramethyluronium hexafluorophosphate; N-ethyl-N,N-diisopropylamine; In dichloromethane; at 0 - 20℃;Inert atmosphere; | DIPEA (135 mg, 1.1 mmol) was added dropwise with stirring to a solution of 3- methoxynaphthalen-1 -amine (36 mg, 0.21 mmol) and pyrazine-2-carboxylic acid (78 mg, 0.63 mmol) at rt in CH2CI2 (3 mL). HBTU (239 mg, 0.63 mmol) was then added as a solid to the reaction mixture under an atmosphere of nitrogen at 0C and the reaction mixture was stirred at rt overnight. The crude reaction mixture was washed with water (10 mL) and extracted with ethyl acetate (2 x 25 mL). The organic layer was dried over anhydrous Na2SO4, filtered, and concentrated under reduced pressure. A silica gel column (hexane/ethyl acetate = 3 : 1, v/v) afforded CTW-113 (32.9 mg, yield 84%) as a white wax-like solid. HPLC purity 99.5% (tR = 18.55 rnin). 1H NMR (300 MHz, CDCI3) delta 12.01 (s, 1H), 9.14 (d, 2H, J = 5.1 Hz), 8.84 (dd, 1H, J = 4.2, 1.8 Hz), 8.57 (d, 1H, J = 2.7 Hz), 8.35 (dd, 1H, J = 8.4, 1.8 Hz), 7.82 (t, 1H, J = 5.1), 7.64 (dd, 1H, J = 8.4, 4.2 Hz), 7.19 (d, 1H, J = 2.7 Hz), 3.94 (s, 3H). 13 C NMR (75 MHz, CDCI3) delta 160.3, 158.7, 158.0, 157.4, 147.1, 136.0, 135.1, 135.0, 133.9, 129.5, 124.1, 123.3, 109.1, 101.1, 56.1. HRMS (ESI) calcd for C16H13N3O2 (M + H)+ 281.1033; found 281.1035. |
Tags: 31519-62-7 synthesis path| 31519-62-7 SDS| 31519-62-7 COA| 31519-62-7 purity| 31519-62-7 application| 31519-62-7 NMR| 31519-62-7 COA| 31519-62-7 structure
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