Structure of 39795-60-3
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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CAS No. : | 39795-60-3 |
Formula : | C11H8BrN |
M.W : | 234.09 |
SMILES Code : | BrC1=CC=C(C2=CC=NC=C2)C=C1 |
MDL No. : | MFCD00956748 |
InChI Key : | GYJBDJGUNDKZKO-UHFFFAOYSA-N |
Pubchem ID : | 616283 |
GHS Pictogram: |
![]() |
Signal Word: | Warning |
Hazard Statements: | H302-H315-H319-H335 |
Precautionary Statements: | P261-P305+P351+P338 |
Num. heavy atoms | 13 |
Num. arom. heavy atoms | 12 |
Fraction Csp3 | 0.0 |
Num. rotatable bonds | 1 |
Num. H-bond acceptors | 1.0 |
Num. H-bond donors | 0.0 |
Molar Refractivity | 57.37 |
TPSA ? Topological Polar Surface Area: Calculated from |
12.89 Ų |
Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
2.46 |
Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
3.28 |
Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
3.51 |
Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
2.82 |
Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
3.7 |
Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
3.15 |
Log S (ESOL):? ESOL: Topological method implemented from |
-3.97 |
Solubility | 0.0248 mg/ml ; 0.000106 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (Ali)? Ali: Topological method implemented from |
-3.23 |
Solubility | 0.139 mg/ml ; 0.000595 mol/l |
Class? Solubility class: Log S scale |
Soluble |
Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-5.4 |
Solubility | 0.00093 mg/ml ; 0.00000397 mol/l |
Class? Solubility class: Log S scale |
Moderately soluble |
GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
Yes |
P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
Yes |
CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
Yes |
CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-5.4 cm/s |
Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
Ghose? Ghose filter: implemented from |
None |
Veber? Veber (GSK) filter: implemented from |
0.0 |
Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
Brenk? Structural Alert: implemented from |
0.0 alert: heavy_metal |
Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.38 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
The compound of formula 2 used as starting material was prepared as follows. A solution of 4-bromobenzeneboronic acid (2 g) in absolute ethanol (10 ml) was added slowly to a stirred mixture of 4-bromopyridine hydrochloride (1.96 g) in toluene (10 ml), 2M aqueous sodium carbonate solution (25 ml) and tetrakistriphenylphosphine palladium [0] (345 mg) under an atmosphere of argon. The mixture was heated to reflux and stirred at reflux for 3 hours. The mixture was cooled to ambient temperature and water (50 ml) was added. The resulting mixture was extracted with ethyl acetate (3*20 ml). The ethyl acetate extracts were combined and extracted with 2N aqueous hydrochloric acid. The acidic extract was cooled and basified by the addition of aqueous sodium hydroxide solution to give a pH of 9. The mixture was then extracted with ethyl acetate (5*50 ml). The ethyl acetate extracts were combined, dried (MgSO4) and evaporated to give 4-(pyrid-4-yl)bromobenzene as a solid (0.71 g), m.p. 123°-124° C.; microanalysis, found: C, 56.4; H, 3.4; N, 5.9percent; C11 H8 BrN requires: C, 56.4; H, 3.4; N, 6.0percent; m/z 234(M+H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
80% | With tetrakis(triphenylphosphine) palladium(0); potassium carbonate; In tetrahydrofuran; water; at 80℃; for 12h;Inert atmosphere; | The compound 1-bromo-4-iodobenzene (20 g, 104.5 mmol) was dissolved in 0.5 L of tetrahydrofuran (THF) in a nitrogen atmospherePyridin-4-yl-boronic acid (15.4 g, 125.4 mmol) and tetrakis (triphenylphosphine) palladium (1.2G, 1 mmol) were added and stirred. Saturated water-saturated potassuim carbonate (17.3 g, 125.4 mmol) was added and heated to 80 CThe mixture was heated to reflux for a period of time. After completion of the reaction, water was added to the reaction mixture, and the mixture was extracted with dichloromethane (DCM)The water was removed with MgSO4, filtered and concentrated under reduced pressure. The residue thus obtained was purified by flash column chromatographySeparation and purification were conducted to obtain the compound I-6 (15 g, 80%). |
58% | With tetrakis(triphenylphosphine) palladium(0); sodium carbonate; In ethanol; water; toluene; at 20 - 110℃; for 24.166h;Inert atmosphere; | Specifically: under argon protection, p-bromoiodobenzene (3.4 g, 12 mmol), 4-pyridineboronic acid (1.3 g, 10 mmol), tetrakis(triphenylphosphine)palladium (0.58 g, 0.5 mol) and sodium carbonate (3.2 g, 30 mmol) was added to a 250 mL three-neck bottle. After adding toluene (100 mL), ethanol (30 mL) and water (10 mL), the mixture was evaporated, and then stirred at room temperature for 10 minutes, then heated to reflux to 110 C and stirred for 24 h. Then, it was filtered, concentrated, extracted with saturated brine, dried, and purified by column chromatography to give the product 4-pyridinebromobenzene (yield 58%). |
With sodium carbonate;(1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; In N,N-dimethyl-formamide; at 80℃; | EXAMPLE 3; Synthesis of (2S)-N-(cyanomethyl)-4-methyl-2-[(R)-phenyl(4'-pyridin-4-yl-1,1'-biphenyl-4-yl)methyl]oxy} pentanamide; Step 1 4-(4-bromophenyl)pyridine; Pyridin-4-ylboronic acid (500 mg, 4.07 mmol), 1-bromo-4-iodobenzene (1.27g, 4.47 mmol) and 2M Na2CO3 (6.1 ml, 12.2 mmol) were dissolved in 20 ml DMF and the solution was degassed 3 times. PdCl2(dppf) (149mg, 0.203 mmol) was added and the mixture was stirred overnight at 80C. The solution was cooled, poured into 100 ml NaHCO3 (sat.) and extracted 3 times with 20ml ethyl acetate. The combined organic layers were then washed with 4 x water, then dried with Na2SO4. 4-(4-bromophenyl)pyridine was obtained and used without further purification. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
2.38 g (100%) | 4-(4-Bromo-phenyl)-pyridine STR132 According to the procedure described in Example 1(a) for the preparation of 3-biphenyl-4-yl-furan, 4-bromopyridine (700 mg, 3.00 mmol) underwent coupling to 4-bromophenylboronic acid to give 2.38 g (100percent) of 4-(4-bromo-phenyl)-pyridine as a yellow solid, which had an NMR that matched literature (Boy, P.; Combellas, C.; Thiebault, A.; Amatore, C.; Jutand, A. Tetrahedron Lett. 1992, 33, 491-494) and was used without further purification. IR (KBr): 1593, 1474, 1412, 1075, 1006, 807, 756, 693, 498 cm-1. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In tetrahydrofuran; CaH2; ethyl acetate; pentane; | EXAMPLE 3 A solution of t-butyl lithium in pentane (2.5 ml, 1.75M) was added dropwise to a stirred solution of 4-(pyrid-4-yl)bromobenzene (0.5 g) in freshly distilled (from CaH2) tetrahydrofuran (15 ml) at -70° C. and under an atmosphere of argon. The reaction mixture was stirred at -70° C. for 5 minutes, and a solution of quinuclidin-3-one (0.25 g) in freshly distilled (from CaH2) tetrahydrofuran (3 ml) was then added. The reaction mixture was stirred at -70° C. for a further 3 hours and then at ambient temperature for 17 hours. Saturated aqueous ammonium chloride solution (50 ml) was added and the tetrahydrofuran was removed by evaporation. The residue was acidified with 2M aqueous hydrochloric acid and the mixture was washed with ethyl acetate (3*30 ml). The aqueous mixture was basified with aqueous sodium hydroxide solution (density, 1.35 g/cm3) and extracted with ethyl acetate (4*30 ml). The ethyl acetate extracts were combined, dried (MgSO4) and evaporated to give an oil which was purified by preparative thin layer chromatography on silica gel (Schleicher and Schull preparative silica gel plates, G1505/LB254, 40*20*0.5 mm) using a 50:50:1 (v/v/v) mixture of ethyl acetate, methanol and concentrated ammonium hydroxide as eluent to give 3-[4-(pyrid-4-yl)phenyl]quinuclidin-3-ol as a solid; microanalysis, found: C, 72.7; H, 7.2; N, 8.8percent; C18 H20 N2 O. H2 O, requires: C, 72.5; H, 7.4; N,9.3percent; NMR ([CD3)2 SO): 1.5(1H,m), 1.7(1H,m), 2.4(2H,s), 3.1-3.3(4H,m), 3.4(2H,d), 3.85(2H,d), 7.4-7.8(6H,m) and 8.6(2H,d of d); m/z 281(M+H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
31% | The 4-(pyrid-4-yl)bromobenzene used as starting material was prepared using the procedure described in Example 1(b) for the preparation of 4-(pyrid-3-yl)bromobenzene, but using 4-bromopyridine in place of 3-bromopyridine. There was thus obtained 4-(4-bromophenyl)pyridine as a solid (31percent yield), m.p. 123°-124° C.; microanalysis, found: C, 56.4; H, 3.4; N, 5.9percent; C11 H8 NBr requires: C, 56.4; H, 3.4; N, 6.0percent; NMR([CD3 ]2 SO): 7.65-7.8(6H, m) and 8.65-8.70(2H,m); m/z 235(M+H). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
14% | With bromine;aluminium trichloride; In nitrobenzene; | EXAMPLE I A mixture of one molar proportion of 4-phenylpyridine and 1.2 molar proportions of anhydrous aluminum chloride in 4.9 molar proportions of nitrobenzene was stirred at 85°-95° C. in nitrogen atmosphere to form a gray solution to which 1.2 molar proportions of bromine were added over a period of 30 minutes. The resultant solution was stirred at 85°-95° C. overnight and then poured onto cracked ice. The reaction was worked-up using conventional acidbase partitioning to give the bromide as a semi-solid mass. Gas chromatographic analysis using biphenyl as an internal standard showed that 89percent of the 4-phenyl pyridine was reacted to give a 32percent yield of 4-(4-bromophenyl)pyridine, a 35percent of 4-(3-bromophenyl)pyridine, a 15percent yield of 4-(2-bromophenyl)pyridine, and a 14percent yield of dibromides. Recrystallization of the mass from n-hexane gave 4-(4-bromophenyl)pyridine as beautiful white needles, m.p. 127-9; pure by gc and nmr analyses. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
1% | EXAMPLE II Example I was essentially repeated except that the bromination was conducted in the absence of a solvent. The process resulted in a 31percent yield of 4-(4-bromophenyl)pyridine, a 31percent yield of 4-(3-bromophenyl)pyridine, and a 1percent yield of 4-(2-bromophenyl)pyridine. |