Structure of 50607-30-2
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The BI-3802 was designed by Boehringer Ingelheim and could be obtained free of charge through the Boehringer Ingelheim open innovation portal opnMe.com, associated with its negative control.
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| CAS No. : | 50607-30-2 |
| Formula : | C5H7NO2 |
| M.W : | 113.11 |
| SMILES Code : | N1CCC(CC1=O)=O |
| MDL No. : | MFCD08704814 |
| InChI Key : | RDNZDMDLRIQQAX-UHFFFAOYSA-N |
| Pubchem ID : | 10887863 |
| GHS Pictogram: |
|
| Signal Word: | Warning |
| Hazard Statements: | H302-H315-H319-H335 |
| Precautionary Statements: | P261-P305+P351+P338 |
| Num. heavy atoms | 8 |
| Num. arom. heavy atoms | 0 |
| Fraction Csp3 | 0.6 |
| Num. rotatable bonds | 0 |
| Num. H-bond acceptors | 2.0 |
| Num. H-bond donors | 1.0 |
| Molar Refractivity | 31.15 |
| TPSA ? Topological Polar Surface Area: Calculated from |
46.17 Ų |
| Log Po/w (iLOGP)? iLOGP: in-house physics-based method implemented from |
0.68 |
| Log Po/w (XLOGP3)? XLOGP3: Atomistic and knowledge-based method calculated by |
-0.81 |
| Log Po/w (WLOGP)? WLOGP: Atomistic method implemented from |
-0.92 |
| Log Po/w (MLOGP)? MLOGP: Topological method implemented from |
-0.89 |
| Log Po/w (SILICOS-IT)? SILICOS-IT: Hybrid fragmental/topological method calculated by |
0.96 |
| Consensus Log Po/w? Consensus Log Po/w: Average of all five predictions |
-0.2 |
| Log S (ESOL):? ESOL: Topological method implemented from |
-0.03 |
| Solubility | 105.0 mg/ml ; 0.931 mol/l |
| Class? Solubility class: Log S scale |
Very soluble |
| Log S (Ali)? Ali: Topological method implemented from |
0.32 |
| Solubility | 236.0 mg/ml ; 2.09 mol/l |
| Class? Solubility class: Log S scale |
Highly soluble |
| Log S (SILICOS-IT)? SILICOS-IT: Fragmental method calculated by |
-1.04 |
| Solubility | 10.3 mg/ml ; 0.0914 mol/l |
| Class? Solubility class: Log S scale |
Soluble |
| GI absorption? Gatrointestinal absorption: according to the white of the BOILED-Egg |
High |
| BBB permeant? BBB permeation: according to the yolk of the BOILED-Egg |
No |
| P-gp substrate? P-glycoprotein substrate: SVM model built on 1033 molecules (training set) |
No |
| CYP1A2 inhibitor? Cytochrome P450 1A2 inhibitor: SVM model built on 9145 molecules (training set) |
No |
| CYP2C19 inhibitor? Cytochrome P450 2C19 inhibitor: SVM model built on 9272 molecules (training set) |
No |
| CYP2C9 inhibitor? Cytochrome P450 2C9 inhibitor: SVM model built on 5940 molecules (training set) |
No |
| CYP2D6 inhibitor? Cytochrome P450 2D6 inhibitor: SVM model built on 3664 molecules (training set) |
No |
| CYP3A4 inhibitor? Cytochrome P450 3A4 inhibitor: SVM model built on 7518 molecules (training set) |
No |
| Log Kp (skin permeation)? Skin permeation: QSPR model implemented from |
-7.57 cm/s |
| Lipinski? Lipinski (Pfizer) filter: implemented from |
0.0 |
| Ghose? Ghose filter: implemented from |
None |
| Veber? Veber (GSK) filter: implemented from |
0.0 |
| Egan? Egan (Pharmacia) filter: implemented from |
0.0 |
| Muegge? Muegge (Bayer) filter: implemented from |
1.0 |
| Bioavailability Score? Abbott Bioavailability Score: Probability of F > 10% in rat |
0.55 |
| PAINS? Pan Assay Interference Structures: implemented from |
0.0 alert |
| Brenk? Structural Alert: implemented from |
1.0 alert: heavy_metal |
| Leadlikeness? Leadlikeness: implemented from |
No; 1 violation:MW<1.0 |
| Synthetic accessibility? Synthetic accessibility score: from 1 (very easy) to 10 (very difficult) |
1.0 |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 47.5% | With ammonium acetate; In ethanol; at 20℃; for 2h; | To a round bottom flask charged with 3A (6.06 g, 19.21 mmol), <strong>[50607-30-2]piperidine-2,4-dione</strong> (2.391 g, 21.14 mmol), ammonium acetate (5.92 g, 77 mmol) and ethanol (64.0 ml) were added. The reaction mixture was stirred at rt for 2 h. Water (20 ml) was added and stirring was continued for 3 h. The product was collected via filtration. The collected solid was washed with water and dried under vacuum ON, yielding 3B (2.26 g, 9.12mmol, 47.5percent yield) as a white solid. MS(ES+) m/z 248.0 (M+H). |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 10.8 g | With hydrogenchloride; for 3h;Reflux; | (3) decarboxylation: to in the intermediate product to B 1mol/L hydrochloric acid of 80g, and then the reaction liquid heating reflux 3h, TLC detection after the reaction is complete, distilled concentrated mother liquor, cooling separating white crystal 2,4-piperidine dione, drying weighing to 10.8 g, computing the yield is 64percent. |
[ 845267-57-4 ]
[ 50607-30-2 ]
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 52% | Example 13 2-PYRIMIDIN-4-YT-1, 5, 6, 7-TETRAHYDRO-4H-PYRROLO JL 3, 2-CIPVRIDIN-4-O. NE HYD ROCHLORIDE 2-BROMO-1-PYRIMIDIN-4-YLETHANONE hydrobromide (67 mg, 0.239 MMOLS), <strong>[50607-30-2]piperidine-2,4-dione</strong> (50 mg, 0.358 MMOLS) and ammonium acetate (74 mg, 0.957 MMOLS) were dissolved in anhydrous ethanol (1 mL) and stirred at r. t. overnight. The reaction mixture was concentrated to dryness under reduced pressure and the residue was taken up with water (1 mL) and filtered; the solid was washed with cold water and dried. To the obtained brown solid (30 mg) dissolved in MEOH (15 mL), 4N HCI in dioxane (0.5 mL) was added and the mixture was stirred for 30 minutes and then concentrated under reduced pressure to half of the volume. The obtained precipitate was filtered, washed with ethyl acetate and dried to give the title compound as a yellow solid (31 mg, Y=52percent). |

[ 77771-02-9 ]
[ 50607-30-2 ]
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 60% | In ethanol; | EXAMPLE 31A 4-(3-bromo-4-fluorophenyl)-3-(methoxycarbonyl)-2-methyl-4,6,7,8-tetrahydro[1,6]naphthyridin-5(1H)-one The product from Example 1C (1.33 g, 11.8 mmol), 3-bromo-4-fluorobenzaldehyde (2.39 g, 11.8 mmol) and methyl-3-aninocrotonate (1.36 g, 11.8 mmol) in ethyl alcohol (30 mL) were stirred in a sealed tube at 75° C. for 24 hours. The reaction mixture was allowed to cool to ambient temperature and filtered to provide the title compound as a white solid (2.27 g). The filtrate was concentrated and flash chromatographed (silica, ethyl acetate:dichloromethane:methyl alcohol, 4:1:0 to 7:0:1) to provide an additional amount of the title compound (0.54 g, 60percent combined yield). mp 150-152° C.; MS (ESI+) m/z 395 (M+H)+; 1H NMR (DMSO-d6) delta8.99 (s, 1H), 7.36 (dd, 1H, J=6.9, 2.1 Hz), 7.22 (dd, 1H, J=8.4, 8.4 Hz), 7.16 (ddd, 1H, J=8.4, 5.1, 2.1 Hz), 6.96 (br s, 1H), 4.90 (s, 1H), 3.52 (s, 3H), 3.19-3.11 (m, 2H), 2.45-2.33 (m, 2H), 2.29 (s, 3H); Anal. Calcd for C17H16N2O3FBr: C, 51.66; H, 4.08; N, 7.09. Found: C, 51.82; H, 4.37; N, 6.90. |
| Yield | Reaction Conditions | Operation in experiment |
|---|---|---|
| 90% | With water; In acetonitrile; for 4h;Heating / reflux; | EXAMPLE ; Preparation of piperidine-2,4-dione; A solution of mu-alanine ethylester hydrochloride (13.8 g, 90mmol) in dichloromethane (90 mL) and TEA (13.8 mL, 99 mmol) was stirred at RT for one hour. More TEA (13.8 mL, 99 mmol) was added, the solution was cooled to 0° C. under stirring and ethylmalonylchloride (12.6 mL, 99 mmol) was added dropwise. After one hour at 0° C., the reaction mixture was stirred one hour at RT. A 15percent aqueous solution of K2CO3 (90 mL) was added and the layers were separated. The organic phase was washed with 10percent HCl (90 mL), dried over Na2SO4, filtered and concentrated under reduced pressure. The crude material was chromatographed on flash silica gel (450 g, eluant: ethyl acetate/n-hexane 2:1) to give N-(2-ethoxycarbonyl-ethyl)-malonamic acid ethyl ester as a yellow oil (15 g, 64.9 mmol, 72percent yield). TLC: DCM/MeOH 20:1, iodine vapours. Sodium metal (610 mg, 26.6 mmol) was dissolved in dry MeOH (25 mL) at RT under stirring and inert atmosphere. After complete dissolution the mixture was stirred 10' longer, then N-(2-ethoxycarbonyl-ethyl)-malonamic acid ethyl ester (6.15 g, 26.6 mmol) in dry toluene (150 mL) is added dropwise. After addition the reaction mixture was stirred at 90° C. for 6 hours, cooled to RT, water (30 mL) was added and the layers were separated. The organic phase was washed with water (2.x.10 mL), the joined aqueous phases were acidified with 37percent HCl and extracted thoroughly (.x.20 or more) with a mixture of DCM/MeOH (5:1). After drying over Na2SO4 and concentration, 3-methoxycarbonylpiperidin-2,4-dione as a pink solid was obtained (4 g, 23.4 mmol, 88percent yield). 3-Methoxycarbonylpiperidin-2,4-dione (4 g, 23.4 mmol) is dissolved in acetonitrile containing 1percent of water (250 mL) and refluxed 4 hours. The reaction mixture is concentrated to give piperidine-2,4-dione, as a yellow solid (2.4 g, 21.2 mmol, 90percent yield). 1H NMR (400 MHz, DMSO-D6) delta ppm 2.43-2.49 (m, 2 H) 3.24 (s, 2 H) 3.28-3.45 (m, 2 H) 8.07 (s, 1 H). |
| 90% | In water; acetonitrile; for 4h;Heating / reflux;Product distribution / selectivity; | A solution of beta-alanine ethylester hydrochloride (13.8 g, 90 mmol) in dichloromethane (90 ml.) and triethylamine (TEA, 13.8 ml_, 99 mmol) was stirred at room temperature for 1 hour. More TEA (13.8 ml_, 99 mmol) was added, the solution was cooled to 00C under stirring and ethylmalonylchloride (12.6 ml_, 99 mmol) was added dropwise. After 1 hour at 00C, the reaction mixture was stirred 1 hour at room temperature. A 15percent aqueous solution of K2CO3 (90 ml.) was added and the layers were separated. The organic phase was washed with 10percent HCI (90 ml_), dried over Na2SO4, filtered and concentrated under reduced pressure. The crude material was chromatographed on flash silica gel (450 g, eluant: ethyl acetate/n-hexane 2:1 ) to give N-(2-ethoxycarbonyl-ethyl)-malonamic acid ethyl ester as a yellow oil (15 g, 64.9 mmol, 72percent yield). Sodium metal (610 mg, 26.6 mmol) was dissolved in dry MeOH (25 ml.) at room temperature under stirring and inert atmosphere. After complete dissolution the mixture was stirred 10' longer, then N-(2-ethoxycarbonyl-ethyl)-malonamic acid ethyl ester (6.15 g, 26.6 mmol) in dry toluene (150 ml.) was added dropwise. After addition, the reaction mixture was stirred at 900C for 6 hours, cooled to room temperature, water (30 ml.) was added and the layers were separated. The organic phase was washed with water (2x10 ml_), the combined aqueous phases were acidified with 37percent HCI and extracted thoroughly with a mixture of DCM/MeOH (5:1 ). After drying over Na2SO4 and concentration, 3-methoxycarbonylpiperidin-2,4-dione as a pink solid was obtained (4 g, 88percent yield). 3-Methoxycarbonylpiperidin-2,4-dione (4 g, 23.4 mmol) was dissolved in acetonitrile containing 1percent of water (250 ml.) and refluxed for 4 hours. The reaction mixture was concentrated to give the title compound, as a yellow solid (2.4 g, 90percent yield). 1 H NMR (400 MHz, DMSO-D6) delta ppm 2.43 - 2.49 (m, 2 H) 3.24 (s, 2 H) 3.28 - 3.45 (m,2 H) 8.07 (s, 1 H). |
| 27% | With water; In acetonitrile; at 86℃; for 4h; | Step 3 Piperidine-2,4-dione: 2,4-Dioxo-piperidine-3-carboxylic acid methyl ester (400 mg, 2.34 mmol, 1.00 equiv) was dissolved in acetonitrile (20 mL)/water (0.2 mL). The resulting mixture was heated at about 86° C. for about 4 hours, and then concentrated in vacuo. The resulting residue was purified by silica gel column chromotagraphy (dichloromethane/methanol (100:1)) to give the title product as a white solid (70 mg, yield=27percent). LC-MS: m/z=114 (MH)+. |
| In acetonitrile; | EXAMPLE 1C 2,4-piperidinedione The product from Example 1B (1.21 g, 7.08 mmol) was dissolved in a large volume of acetonitrile (1percent water). After refluxing for 2 hours, solution was concentrated to provide the title compound as a yellow solid (quantitative yield). MS (CI+) m/z 131 (M+NH4)+; 1H NMR (CDCl3) delta6.64 (br s, 1H), 3.58 (ddd, J=6.3, 6.0, 3.6 Hz, 2H), 3.34 (s, 2H), 2.64 (dd, J=6.3, 6.3 Hz, 2H). |


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