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CAS No. : | 52133-67-2 | MDL No. : | MFCD02094250 |
Formula : | C11H19NO4 | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | AHKACZDKUNMFBD-UHFFFAOYSA-N |
M.W : | 229.27 | Pubchem ID : | 4151505 |
Synonyms : |
|
Num. heavy atoms : | 16 |
Num. arom. heavy atoms : | 0 |
Fraction Csp3 : | 0.82 |
Num. rotatable bonds : | 9 |
Num. H-bond acceptors : | 5.0 |
Num. H-bond donors : | 0.0 |
Molar Refractivity : | 58.19 |
TPSA : | 68.55 Ų |
GI absorption : | High |
BBB permeant : | Yes |
P-gp substrate : | No |
CYP1A2 inhibitor : | No |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -6.73 cm/s |
Log Po/w (iLOGP) : | 2.57 |
Log Po/w (XLOGP3) : | 1.36 |
Log Po/w (WLOGP) : | 1.48 |
Log Po/w (MLOGP) : | 0.61 |
Log Po/w (SILICOS-IT) : | 1.67 |
Consensus Log Po/w : | 1.54 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 0.0 |
Bioavailability Score : | 0.55 |
Log S (ESOL) : | -1.52 |
Solubility : | 6.86 mg/ml ; 0.0299 mol/l |
Class : | Very soluble |
Log S (Ali) : | -2.4 |
Solubility : | 0.909 mg/ml ; 0.00396 mol/l |
Class : | Soluble |
Log S (SILICOS-IT) : | -2.02 |
Solubility : | 2.18 mg/ml ; 0.00951 mol/l |
Class : | Soluble |
PAINS : | 0.0 alert |
Brenk : | 1.0 alert |
Leadlikeness : | 2.0 |
Synthetic accessibility : | 3.33 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P280-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H302-H315-H319-H332-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
60.19% | Stage #1: With sodium ethanolate In ethanol at 20℃; for 3.5 h; Reflux Stage #2: With hydrogenchloride In water at 10℃; |
b. To a freshly prepared solution of sodium ethoxide [ethanol (250 mL) and sodium metal (9.02 g, 392.55 mmol)] was added ethyl 2-cyano-4,4-diethoxybutanoate (82) (45 g, 196.27 mmol) and thiourea (14.94 g, 196.27 mmol) in ethanol (200 mL). The reaction mixture was heated with stirring at reflux for 3.5 h. The reaction mixture was allowed to cool to room temperature and stirred overnight. The reaction was quenched with water (100 mL) and concentrated in vacuum to remove ethanol. The residue obtained was dissolved in water (100 mL) and neutralized to pH 7 using dilute aqueous hydrochloric acid (3N) by maintaining the temperature below 10 °C. The solid obtained was collected by filtration to afford on drying in vacuum 6-amino-5-(2,2-diethoxyethyl)-2- mercaptopyrimidin-4-ol (83) (30.6 g, 60.19percent) as a pale yellow solid. 1HNMR (300 MHz, DMSO) δ 11.75 (s, IH, D2O exchangeable), 11.44 (s, IH, D2O exchangeable), 6.07 (s, 2H, D2O exchangeable), 4.50 (t, J= 5.6, IH), 3.59 (dq, J= 7.0, 9.5, 2H), 3.40 (dq, J= 7.0, 9.6, 2H), 2.44 (d, J = 5.6, 2H), 1.07 (t, J= 7.0, 6H); IR (KBr): 3226, 2973, 2909, 1624, 1569, 1474, 1376, 1287, 1213, 1114, 1049, 993, 892, 822, 789 and 763 cm"1; MS (ES+1) 260.1 (M+l), 282.1 (M+23), (ES ): 258.3 (M -1); HPLC [(Column: Zorbax SBC3, 3.0 x 150 mm, 5 μm, with a ZGC SBC3, 2.1 x 12.5 mm guard cartridge. Mobile phase: 0.1 M Ammonium Acetate /Acetonitrile) Rt= 11.408 min (99.64percent]); Analysis: Calculated for C10Hi7N3O3S: C, 46.45; H, 6.72; N, 16.06; Found: C, 46.31; H, 6.60; N, 16.20. |
36% | Stage #1: With sodium In ethanol at 85℃; for 18 h; Stage #2: With ammonium chloride In water at 20℃; for 18 h; |
To ethanol (200 ml) was added sodium (2.05 g, 89 mmol) in small portions. The solution was stirred until complete dissolution of the sodium metal. 2-Cyano-4,4- diethoxy-butyric acid ethyl ester (J. Chem. Soc, I960, 131-138) (9.292 g, 40.5 mmol) was then added as a solution in ethanol (50 ml), followed by addition of thiourea (3.08 g, 40.4 mmol). The solution was heated at 85 °C for 18 hours, and then cooled to room temperature. The solution was concentrated, and saturated aqueous ammonium chloride solution (150 ml) was added. The mixture was stirred EPO <DP n="125"/>at room temperature for 18 hours, after which time the solid was collected by filtration, and washed with water (20 ml) to yield the product (3.376 g, 36percent). |
36% | Stage #1: at 85℃; for 18 h; Stage #2: With ammonium chloride In water at 20℃; for 18 h; |
PREPARATION 2; 4-Chloro-7H-pyrrolor2,3- |
36% | Stage #1: With sodium In ethanol at 85℃; for 18 h; Stage #2: With ammonium chloride In water at 20℃; for 18 h; |
To ethanol (200 ml) was added sodium (2.05 g, 89 mmol) in small portions. The solution was stirred until complete dissolution of the sodium metal. 2-Cyano-4,4- diethoxy-butyric acid ethyl ester (J. Chem. Soc, 1960, 131-138) (9.292 g, 40.5 mmol) was then added as a solution in ethanol (50 ml), followed by addition of thiourea (3.08 g, 40.4 mmol). The solution was heated at 85 0C for 18 hours, and then cooled to room temperature. The solution was concentrated, and saturated aqueous ammonium chloride solution (150 ml) was added. The mixture was stirred at room temperature for 18 hours, after which time the solid was collected by filtration, and washed with water (20 ml) to yield the product (3.376 g, 36percent). |
36% | Stage #1: at 85℃; for 18 h; Stage #2: With ammonium chloride In water at 20℃; for 18 h; |
EXAMPLE 12 1-(7/-/-Pyrrolor2,3-cf1pyrimidin-4-yl)-piperidin-4-ylamine12A. 6-Amino-5-(2,2-diethoxy-ethyl)-2-mercapto-pyrimidin-4-olTo ethanol (200 ml) was added sodium (2.05 g, 89 mmol) in small portions. The solution was stirred until complete dissolution of the sodium metal. 2-Cyano-4,4-diethoxy-butyric acid ethyl ester {J. Chem. Soc, 1960, 131-138) (9.292 g, 40.5 mmol) was then added as a solution in ethanol (50 ml), followed by addition of thiourea (3.08 g, 40.4 mmol). The solution was heated at 85 0C for 18 hours, and then cooled to room temperature. The solution was concentrated, and saturated aqueous ammonium chloride solution (150 ml) was added. The mixture was stirred at room temperature for 18 hours, after which time the solid was collected by filtration, and washed with water (20 ml) to yield the product (3.376 g, 36percent). |
36% | Stage #1: at 85℃; for 18 h; Stage #2: With ammonium chloride In water at 20℃; for 18 h; |
EXAMPLE 18; C-f1-(7H-Pyrrolof2,3-o1Pyrimidin-4-yl)-piperidin-4-yl|-methylamine; 18A. 6-Amino-5-(2,2-diethoxy-ethyl)-2-mercapto-pyrimidin-4-olTo ethanol (200 ml) was added sodium (2.05 g, 89 mmol) in small portions. The solution was stirred until complete dissolution of the sodium metal. 2-Cyano-4,4-diethoxy-butyric acid ethyl ester (J. Chem. Soc, 1960, 131-138) (9.292 g, 40.5 mmol) was then added as a solution in ethanol (50 ml), followed by addition of thiourea (3.08 g, 40.4 mmol). The solution was heated at 85 0C for 18 hours, and then cooled to room temperature. The solution was concentrated, and saturated aqueous ammonium chloride solution (150 ml) was added. The mixture was stirred at room temperature for 18 hours, after which time the solid was collected by filtration, and washed with water (20 ml) to yield the product (3.376 g, 36percent). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
78% | at 145℃; for 4 h; | Method AI: Ethyl 2-cyano-4,4-diethoxybutanoate (xlii-a):_ 2-Bromo-1,1-diethoxyethane (4 g, 20 mmol, 1.0 eq.) was added to a mixture of ethyl 2-cyanoacetate (11.4 g, 101 mmol, 5.0 eq.), K2CO3 (2.8 g, 20 mmol, 1.0 eq.) and NaI (200 mg, 1.3 mmol, 0.06 eq.), as described in J. Chem. Soc., 1960, 131-138. The reaction mixture was refluxed for 4 h at 145° C. After cooling, the reaction mixture was purified by chromatography on silica gel (eluted with petroleum ether/ethyl acetate (80:1→40:1→40:1) to give 3.57 g of xlii-a as a colorless oil (78percent). 1H NMR (400 MHz, CDCl3): δ 4.70 (t, J=5.6 Hz, 1H), 4.26 (q, J=7.2 Hz, 2H), 3.78-3.64 (m, 3H), 3.62-3.45 (m, 2H), 2.35-2.14 (m, 2H), 1.34 (q, J=7.2 Hz, 3H), 1.25-1.16 (m, 6H). |
78% | at 145℃; for 4 h; | As described in J. Chem. Soc., 1960, 131-138,2-Bromo-1,1-diethoxyethane (4 g, 20 mmol, 1.0 eq)Was added to a mixture of ethyl 2-cyanoacetate (11.4 g, 101 mmol, 5.0 eq), K 2 CO 3 (2.8 g, 20 mmol, 1.0 eq) and NaI (200 mg, 1.3 mmol, 0.06 eq) .The reaction mixture was refluxed at 145 ° C. for 4 hours.After cooling, the reaction mixture was purified by silica gel chromatography (eluting with petroleum ether / ethyl acetate (80: 1 → 40: 1 → 10: 1)) to give 3.57 g of xlii-a as a colorless oil I got it (78percent). |
74% | at 145℃; for 4.5 h; Inert atmosphere | To a dry 3-necked round bottomed flask fitted with a condenser was added 11.3 g (81.5 mmol) of oven dried K2CO3 and 0.82 g (5.5 mmol) of NaI. The solids were placed under high vacuum for an hour to ensure dryness. The flask was refilled with argon and 44.0 mL (0.413 mol) of ethyl cyanoacetate was added followed by 13.0 mL (83.8 mmol) of bromoacetal. The yellow mixture was heated to 145°C for 4.5 hours and was then cooled to room temperature. The mixture was dissolved in 100 mL of water and 100 mL of diethyl ether. The organic layer was separated and the aqueous layer was extracted with an additional 100 mL of ether. The organic layers were dried over MgSO4, filtered, and concentrated. The crude material was purified by column chromatography (9:1 Hex/EtOAc) to give 14.2 g (62.0 mmol, 74percent yield) of a light yellow oil. (Rf: 0.53; 1:1 Hex/EtOAc). 1H-NMR (CDCl3, 600 MHz): σ 1.18 - 1.22 (m, 6H), 1.31 (t, 3H, J = 7.2 Hz), 2.16 - 2.21 (m, 1H), 2.24 - 2.29 (m, 1H), 3.49 - 3.55 (m, 2H), 3.64 - 3.71 (m, 3H), 4.24 (q, 2H, J = 7.2 Hz), 4.68 (t, 1H, J = 5.4 Hz). 13C-NMR (CDCl3, 150 Mz): σ 14.1, 15.3, 33.7, 62.8, 62.9, 100.1, 116.5, 166.0. HRMS (FAB): expected for C11H20NO4 (M+H)+: 230.13868. Found: 230.13861. IR(neat): vmax 2989, 1774 cm-1. |
70% | With sodium methylate In N,N-dimethyl-formamide at 90℃; for 4 h; | The synthesis of target compound 3 (Scheme 1C), started with the synthesis of a reported method for compound i.’3 2-Bromo-i,i-diethoxyethane (compound 10) was reacted with ethyl2-cyanoacetate to obtain compound 1 lwhich was cyclized to compound 12 using acetamidine hydrochloride under basic conditions. Chlorination of compound 12 using POC13 provided compound 13 in 80percent yield. Displacement of the chloride of compound 13 with 4-methoxy-N- methyl aniline (compound 14) and catalytic amounts of HC1 in isopropanol, provided compound1. Methylation of compound 1 with Mel under basic conditions afforded compound 3 in 85percent yield. The synthesis of target compound 5 (Scheme 1C), involved N-formylation of 4-methoxy- 2-methylanline (compound 15) to afford compound 16 in 70percent yield. LAH reduction of compound 16 provided substituted aniline compound 17. Displacement of the chloride of compound 13 with anilines (compounds 15 and 17) and catalytic amounts of HC1 in isopropanol provided compounds 4 and 5 (75percent and 70percent respectively). |
63% | Reflux | Example A1; Preparation of 4-chloro-5-iodopyrrolo[2,3-d]pyrimidine in Accordance with the Following Reaction Scheme; (a) 130 ml (860 mmol) of bromoacetaldehyde diethyl acetal are refluxed for 10 h with ethyl cyanoacetate (430 ml, 4.04 mol), sodium iodide (8.1 g; 54.04 mmol) and potassium carbonate (115.9 g; 839 mmol). After cooling to room temperature (RT), the batch is stirred with 800 ml of water, the aqueous phase is extracted with diethyl ether, the combined organic phases are dried and evaporated. Chromatography gives 124.99 g (63percent) of a colourless liquid ethyl 2-cyano-4,4-diethoxybutyrate. |
60% | Stage #1: With sodium hydride In N,N-dimethyl-formamide; benzene at -10 - 20℃; for 1 h; Stage #2: at 100℃; for 2 h; |
To a suspension of NaH (60percent dispersion in mineral oil, 1.62 g, 40.5 mmol) in DMF (35 mL) and benzene (12 mL) was added ethyl cyanoacetate (4.7 mL, 44.2 mmol) dropwise at -10 0C. After stirring for 1 hour at room temperature, 2-bromo-1 ,1-diethoxyethane (5.6 mL, 0.82 equiv.) was added and the reaction mixture was heated at 100 0C for 2 hours. The reaction mixture was then cooled to room temperature and filtered. The filtrate was condensed, and water was added. The mixture was extracted with ether. The extracts were washed with brine, dried over MgSO4 and concentrated in vacuo. The crude material was purified by flash chromatography on silica gel (20percent EtOAc/hexanes). The desired product was obtained as colorless oil (5 g, 60percent). MS: (M + Na)/z = 252. |
60% | Stage #1: With sodium ethanolate; sodium iodide In N,N-dimethyl-formamide at 20℃; for 0.5 h; Stage #2: at 90℃; for 4 h; |
Take a 500 mL two-necked flask and ethyl cyanoacetate (50 g, 0.44 mol) in anhydrous DMF(N, N-dimethylformamide) (300 mL) was added sodium ethoxide (36 g, 0.528 mol, 1.2 eq.) And sodium iodide (catalytic amount) at room temperature Stirring for 30min,2-Bromo-1,1-diethoxyethane was added(66.5 mL, 0.44 mol, 1 equiv)The temperature was raised to 90 ° C and stirred for 4 h. Cooled to room temperature, evaporated under reduced pressure to remove most of the DMF, add EA (ethyl acetate), stirring 10min, filter, take the filtrate to add saturation Salt water extraction. The organic phase was collected, dried, dried and dried (PE: EA = 12: 1, i.e., the volume ratio of petroleum ether: ethyl acetate was12) was obtained as a pale yellow oily product (61.3 g) in 60percent yield. |
57% | at 140 - 150℃; | 2-Cyano-4,4-diethoxy-butyric acid ethyl ester (4).; Bromoacetaldehyde diethylacetal (3, 541 g, 2.75 mol) was added to a suspension of powdered potassium carbonate (379.6 g, 2.75 mol, 1.0 equiv) and sodium iodide (33 g, 0.22 mol, 0.08 equiv) in ethyl cyanoacetate(2, 1.55 Kg, 13.75 mol, 5.0 equiv). Upon addition of the aldehyde to the reaction mixture, the resulting solution turned yellow. The reaction mixture was slowly heated to 140-150° C. collecting the volatile material in a Dean Stark trap. This material was discarded. Fairly vigorous gas evolution was observed to begin at 140° C. The reaction was monitored by G.C. and was observed to be near completion at 90 minutes. Heating was continued for an additional 45 minutes when gas evolution was observed to have ceased. The reaction mixture was then cooled to room temperature and partitioned between 4 L water and 2 L methyl tent-butyl ether (MTBE). The layers were separated and the aqueous layer was extracted with an additional 2 L of MTBE. The aqueous layer was checked for product by G.C. then discarded. The organic layers were dried over sodium sulfate, filtered and concentrated in vacuum. The crude product was purified by fractional distillation (91-105° C. (at) 0.53-0.65 mm/Hg) to afford 2-cyano-4,4-diethoxy-butyric acid ethyl ester (4, 359.4 g, 630.5 g theoretical, 57percent) as a oil. For 4: 1H NMR (DMSO-d6, 300 MHz) δ ppm 4.60 (t, 1H, J=5.6 Hz), 4.15 (m, 3H), 3.59 (m, 2H), 3.45 (m,1H), 2.11 (t, 2H, J=6.2 Hz), 1.22 (t, 3H, J=6.9 Hz), 1.10 (dt, 6H, J=7.1, 6.9 Hz). |
51% | for 24 h; Reflux | Preparation of intermediate compound (87) a. A mixture of ethyl cyanoacetate 81 (227.97 g, 2015.52 mmol), bromo acetaldehyde diethyl ether (80) (80 g, 405.94 mmol), potassium carbonate (55.99 g, 405.13 mmol) and sodium iodide (4 g, 26.67 mmol) was refluxed for 20 h (CO2 evolution was observed during the reaction). The reaction mixture was stirred at reflux for additional 4 h after the evolution of CO2 has ceased. The reaction was cooled to room temperature, diluted with water (400 mL) and diethyl ether (400 mL). The organic layer was separated and the aqueous layer was extracted with diethyl ether (250 mL). The ether layers were combined washed with water (2 x 100 mL), brine (200 mL), dried, filtered and concentrated in vacuum. The product obtained was distilled under vacuum to furnish ethyl-2- cyano-4, 4-diethoxybutanoate (82) (47.5 g, 51.0 percent) as a colorless oil; B.P: 103 °C/1 mm Hg. 1HNMR (300 MHz, DMSO) δ 4.61 (t, J= 5.7, IH), 4.24 - 4.08 (m, 3H), 3.67 - 3.54 (m, 2H), 3.53 - 3.40 (m, 2H), 2.12 (t, J= 6.0, 2H), 1.23 (t, J= 7.1, 3H), 1.11 (td, J= 4.9, 7.0, 6H); IR (neat): 3482, 2980, 2901, 2361, 2252, 1749, 1446, 1374, 1262, 1218, 1128, 1062 and 857 cm"1; MS (ES"): 263.6 (M + 35); Analysis: CaIc for CnHi9NO4.0.25 H2O: C, 56.51; H, 8.40; N, 5.99; Found: C, 56.71; H, 8.16; N, 5.96. |
29.2% | for 12 h; Reflux | Step 5: Preparation of ethyl 2-cyano-4,4-diethoxybutanoate A mixture of ethyl 2-cyanoacetate (1000 g, 8.84 mol), 2-bromo-1,1-diethoxyethane (400 g, 2.03 mol), KI (33.4 g, 0.201 mol) and K2CO3 (280 g, 2.03 mol) was heated to reflux for 12 hrs. The reaction mixture was diluted with CH2Cl2 (1000 mL) and the resulting precipitate was filtered off and the filtrate was washed with brine and dried over anhydrous Na2SO4. The solvent was removed in vacuo and the residue distilled to give the title compound (136 g, 29.2percent yield) as a light yellow oil that was used as is in the next step. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
38% | With potassium carbonate In dimethyl sulfoxide at 70 - 80℃; for 15 h; | General procedure: Halo acetal 2a or 2b, 0.25 mol, was added with stirring to a mixture of 0.25 mol of the corresponding CH acid and 28 g (0.2 mol) of calcined potassium carbonate in 100 mL of DMSO. The mixture was stirred for 15 h at 70– 80°C (in the reactions with 2a), or at 100–120°C (2b), cooled, and treated with water and diethyl ether (2 100 mL). The combined extracts were dried over anhydrous sodium sulfate, the solvent was distilled off, and the residue was distilled under reduced pressure. |
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