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Berg, Kaja ; Hegde, Pooja ; Pujari, Venugopal , et al. Eur. J. Med. Chem.,2023,249,115125. DOI: 10.1016/j.ejmech.2023.115125 PubMed ID: 36682292
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Abstract: The electron transport chain (ETC) in the cell membrane consists of a series of redox complexes that transfer electrons from electron donors to acceptors and couples this electron transfer with the transfer of protons (H+) across a membrane. This process generates proton motive force which is used to produce ATP and a myriad of other functions and is essential for the long-term survival of Mycobacterium tuberculosis (Mtb), the causative organism of tuberculosis (TB), under the hypoxic conditions present within infected granulomas. Menaquinone (MK), an important carrier molecule within the mycobacterial ETC, is synthesized de novo by a cluster of enzymes known as the classic/canonical MK biosynthetic pathway. MenA (1,4-dihydroxy-2-naphthoate prenyltransferase), the antepenultimate enzyme in this pathway, is a verified target for TB therapy. In this study, we explored structure-activity relationships of a previously discovered MenA inhibitor scaffold, seeking to improve potency and drug disposition properties. Focusing our campaign upon three molecular regions, we identified two novel inhibitors with potent activity against MenA and Mtb (IC50 = 13-22 μM, GIC50 = 8-10 μM). These analogs also displayed substantially improved pharmacokinetic parameters and potent synergy with other ETC-targeting agents, achieving nearly complete sterilization of Mtb in combination therapy within two weeks in vivo. These new inhibitors of MK biosynthesis present a promising new strategy to curb the continued spread of TB.
Keywords: 1,4-dihydroxy-2-naphthoate prenyltransferase ; MenA ; MenA inhibitors ; Menaquinone ; Mtb ; Mycobacterium tuberculosis ; Piperidine derivatives ; SAR
Purchased from AmBeed: 25952-53-8 ; 90719-32-7 ; 872-85-5 ; 6457-49-4 ; 3769-41-3 ; 10338-57-5 ; 135-19-3 ; 135-19-3 ; 28177-48-2 ; 22246-18-0 ; 122334-37-6 ; 91914-06-6 ; 10040-98-9 ; 161975-39-9 ; 150-76-5 ; 371-41-5 ; 63754-96-1 ; 288-32-4 ; 3380-34-5 ; 1677-46-9 ; 166815-96-9 ; 700-57-2 ; 1204-86-0 ; 21725-69-9 ; 367-12-4 ; 1003-29-8 ; 627-35-0 ; 27292-49-5 ; 104324-16-5 ; 123855-51-6 ; 4328-13-6 ; 875401-70-0 ; 405272-71-1 ; 63614-86-8 ; 1420942-13-7 ; 25952-53-8 ; 1420895-21-1 ; 1078-18-8 ; 32363-45-4 ; 69564-68-7 ; 31519-22-9 ; 22246-18-0 ; 189618-33-5 ; 180847-24-9 ; 6264-98-8 ; 946680-75-7 ; 63608-38-8 ; 713-68-8 ; 62810-39-3 ; 189618-32-4 ; 180847-23-8 ; 63608-31-1 ; 15789-05-6 ; 63712-27-6 ; 63608-33-3 ; 63608-35-5 ...More
CAS No. : | 6457-49-4 | MDL No. : | MFCD00174228 |
Formula : | C6H13NO | Boiling Point : | No data available |
Linear Structure Formula : | - | InChI Key : | XBXHCBLBYQEYTI-UHFFFAOYSA-N |
M.W : | 115.17 | Pubchem ID : | 420771 |
Synonyms : |
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Signal Word: | Danger | Class: | 8 |
Precautionary Statements: | P280-P305+P351+P338-P310 | UN#: | 3263 |
Hazard Statements: | H314 | Packing Group: | Ⅱ |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In 1,4-dioxane; at 70 - 80℃; for 12 - 48h;Combinatorial reaction / High throughput screening (HTS); | Example 1. Preparation of a combinatorial library of substituted 2-aminomethyl-5-hydroxy-1H-indole-3-carboxylic acids esters of general formula 1.1. A mixture of 0.357 mmol of ester 2, 0.43 mmol of a secondary amine 3, and 0.43 mmol of formaldehyde in the form of formalin in 3 ml of dioxane is heated at 70-80°C at stirring for 12 to 48 hours. Progress of the reaction is monitored by chromato-mass-spectrometry. Upon completion of the reaction, the reaction mass is diluted with water, the residue is filtered and recrystallized from a suitable solvent, or purified by chromatography. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
3.59 g | With potassium carbonate; In dimethyl sulfoxide; at 100℃; for 4h; | To a solution of piperidin-4-ylmethanol (2.19 g) in DMSO (40 mL) were added 4-fluoro-3- (trifluoromethyl) benzonitrile (3.00 g) and potassium carbonate (3.21 g) . The reactionmixture was stirred at 100C for 4 hr, water was added, and the mixture was extracted with ethyl acetate. The extract was washed with water and saturated brine, and dried overanhydrous magnesium sulfate, and the solvent was evaporated under reduced pressure. The residue was purified by silica gel column chromatography (ethyl acetate/hexane) to give the title compound (3.59 g) .XH NMR (300 MHz, DMSO-d6) delta 1.20-1.36 (2H, m) , 1.44-1.61 (1H, m) , 1.68-1.81 (2H, m) , 2.74-2.87 (2H, m) , 3.14-3.24 (2H, m) , 3.28-3.33 (2H, m) , 4.51 (1H, t, J = 5.3 Hz), 7.52 (1H, d, J = 8.5 Hz), 8.03 (1H, dd, J = 8.6, 2.0 Hz), 8.13 (1H, d, J = 1.9 Hz) .MS (ESI+) : [M+H]+.285.1. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
73% | With benzotriazol-1-ol; 1-ethyl-(3-(3-dimethylamino)propyl)-carbodiimide hydrochloride; In tetrahydrofuran; at 20℃; | General procedure: To a solution of <strong>[10241-97-1]5-methyl-1H-indole-2-carboxylic acid</strong> (20) (263mg, 1.50mmol) in THF (7mL) were added 2-(piperidin-4-yl)ethanol (213mg, 1.65mmol), 1-hydroxybenzotriazole (HOBt, 101mg, 0.750mmol), and 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide (EDAC) hydrochloride (316mg, 1.65mmol), followed by stirring at room temperature for 14h. The reaction mixture was partitioned between ethyl acetate and 0.5M aqueous hydrochloric acid. The organic layer was washed with saturated aqueous sodium hydrogen carbonate solution and saturated aqueous sodium chloride solution, dried over anhydrous sodium sulfate, and then concentrated in vacuo. The residue was recrystallized from ethyl acetate/acetonitrile (5mL/2mL) to give 3 (365mg, 85.0percent) as a beige powder. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
80% | To a stirred solution of <strong>[22744-12-3]2-(4-(methoxycarbonyl)phenyl)acetic acid</strong> (1 g, 5.15mmol)and piperidin-4-ylmethanol (0.65 g, 5.67 mmol), in dichloromethane(25 mL) was added triethylamine (1..07 mL, 7.72mmol),the reaction was stirred at room temperature for lOmin, then cooled reaction mixture to 0C and added T3P (4.91 mL,7.72 mmol), and the resulting mixture was stirred at room temperature for 3 h.Reaction was monitored by TLC, after completion of reaction,the mixture was quenched with ice. The reaction mixture was diluted with water and extracted with dichloromethane (3x25 mL). The organic portion was washed with water, brine, dried over sodium sulphate and concentrated under reduced pressure to get the tiltle product as gummy solid. (XVI, 1.2 g, 80%). LC-MS m/z calcd for Ci6H2iN04, 291.1 ; found 292.1 [M+H]+. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
In dimethyl sulfoxide; at 120℃;Inert atmosphere; | To a solution of <strong>[58656-98-7]ter<strong>[58656-98-7]t-butyl 4-fluorobenzoate</strong></strong> (23 g,0.12 mmol) in DM50 (100 mE) was added piperidin-4- ylmethanol (40.5 g, 0.35 mmol). The mixture was heated to 120 C. overnight under nitrogen. After cooling to room temperature, water (50 mE) was added to the reaction mixture, and extracted with ethyl acetate (20 mEx3). The organic layer was washed with brine (15 mEx3). The combined organic phases were dried over anhydrous sodium sulfate and concentrated in vacuo, and purified by CC (PEEA=10: 1) to give compound tert-butyl 4-(4-(hydroxym- ethyl)piperidin-1 -yl)benzoate (31 g, 91.2%) as a white solid. ECMS (Agilent ECMS 1200-6120, Column:Waters X-l3ridge C18 (50 mmx4.6 mmx3.5 jim); Column Temperature: 40 C.; Flow Rate: 2.0 mE/mm; Mobile Phase:from 90% [(total 10mM AcONH4) waterCH3CN=900100 (vv)] and 10% [(total 10 mM AcONH4) water CH3CN=100900 (vv)] to 10% [(total 10 mM AcONH4) waterCH3CN=900100 (vv)] and 90% [(total 10 mM AcONH4) waterCH3CN=100900 (vv)] in 1.6 mm, then under this condition for 2.4 mm, finally changed to 90% [(total 10 mM AcONH4) waterCH3CN=900100 (vv)] and 10% [(total 10 mMAcONH4) waterCH3CN=100900 (vv)] in 0.1 mm and under this condition for 0.7 mm). Purity is 99.57%, Rt=2.035 mm.; MS Calcd.: 291.2; MS Found:292.2 [M+H]+. HPEC (Agilent HPEC 1200, Colunm: Waters X-l3ridge C18 (150 mmx4.6 mmx3.5 jim); Column Temperature: 40 C.; Flow Rate: 1.0 mE/mm; Mobile Phase:from 95% [water+10 mM NH4HCO3] and 5% [CH3CN] to 0% [water+10 mM NH4HCO3] and 100% [CH3CN] in 10 mm, then under this condition for 5 mi finally changed to 95% [water+10 mM NH4HCO3] and 5% [CH3CN] in 0.1mm and under this condition for 5 mi. Purity is 93 .27%,Rt=9.542 mm. ?H NMR (400 MHz, CDC13) oe 1.29-1.40 (2H, m),1.49 (1H, d, J=5.4 Hz), 1.57 (9H, s), 1.70-1.75 (1H, m), 1.82(2H, d, J=12.8 Hz), 2.80-2.87 (2H, m), 3.53 (2H, t, J=5.8Hz), 3.87-3.90 (2H, m), 6.85 (2H, d, J=9.2 Hz), 7.84 (2H, d,J=9.2 Hz). Chemical Formula: C,7H25N03, MolecularWeight: 291.39. Total H count from HNMR data: 25. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
81% | With potassium carbonate; In acetonitrile; at 80℃; for 16h; | To a stirred solution of <strong>[13790-39-1]4-chloro-6,7-dimethoxyquinazoline</strong> (1.00 g, 4.452 mmol, 1.00 equiv) in acetonitrile (40 mL) were added (piperidin-4-yl)methanol (0.77 g, 6.677 mmol, 1.50 equiv) and potassium carbonate (1.23 g, 8.903 mmol, 2.00 equiv). After stirring at 80C for 16 h, the reaction mixture was concentrated under vacuum to remove the solvent. The residue was diluted with water and extracted with ethyl acetate. The combined organic layers were washed with saturated sodium chloride solution, dried over anhydrous sodium sulfate and filtered. The filtrate was concentrated under reduced pressure. The residue was purified by silica gel column chromatography (DCM/MeOH (20:1)) to afford 1.10 g (81%) of (l-(6,7-dimethoxyquinazolin-4- yl)piperidin-4-yl)m ethanol as an off-white solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70% | With tetra-(n-butyl)ammonium iodide; potassium carbonate; In 1,4-dioxane; at 100.0℃; for 1.0h; | Combine <strong>[1340506-55-9]tert-butyl 6-chloropyridazine-3-carboxylate</strong> (7b) (0.5g, 2.0mmol), 4-hydroxymethylpiperidine (0.3g, 2.0mmol),Potassium carbonate (0.6g, 6mmol) and tetrabutylammonium iodide (0.08g, 0.2mmol) were added to 10mL 1,4-dioxane,Heat to 100 degrees. After stirring for 1 h, it was cooled to room temperature, the solvent was removed under reduced pressure, and 20 mL DCM and 20 mL water were added for extraction.After the organic layer was concentrated under reduced pressure, the residue was slurried with 30 mL of a mixed solution of dichloromethane/petroleum ether (v/v) = 1/2 for 20 minutes,After filtration, tert-butyl 6-[4-(hydroxymethyl)-1-piperidinyl]pyridazine-3-carboxylate (7c) (0.5 g, yield: 70%) was obtained. |
[ 297172-16-8 ]
(4-Methylpiperidin-4-yl)methanol
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