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CAS No. : | 5192-03-0 | MDL No. : | MFCD00005679 |
Formula : | C8H8N2 | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | ZCBIFHNDZBSCEP-UHFFFAOYSA-N |
M.W : | 132.16 | Pubchem ID : | 78867 |
Synonyms : |
|
Num. heavy atoms : | 10 |
Num. arom. heavy atoms : | 9 |
Fraction Csp3 : | 0.0 |
Num. rotatable bonds : | 0 |
Num. H-bond acceptors : | 0.0 |
Num. H-bond donors : | 2.0 |
Molar Refractivity : | 42.7 |
TPSA : | 41.81 Ų |
GI absorption : | High |
BBB permeant : | Yes |
P-gp substrate : | No |
CYP1A2 inhibitor : | Yes |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | No |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | No |
Log Kp (skin permeation) : | -6.61 cm/s |
Log Po/w (iLOGP) : | 1.08 |
Log Po/w (XLOGP3) : | 0.7 |
Log Po/w (WLOGP) : | 1.76 |
Log Po/w (MLOGP) : | 0.91 |
Log Po/w (SILICOS-IT) : | 1.86 |
Consensus Log Po/w : | 1.26 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 1.0 |
Bioavailability Score : | 0.55 |
Log S (ESOL) : | -1.77 |
Solubility : | 2.26 mg/ml ; 0.0171 mol/l |
Class : | Very soluble |
Log S (Ali) : | -1.16 |
Solubility : | 9.24 mg/ml ; 0.0699 mol/l |
Class : | Very soluble |
Log S (SILICOS-IT) : | -2.89 |
Solubility : | 0.171 mg/ml ; 0.00129 mol/l |
Class : | Soluble |
PAINS : | 0.0 alert |
Brenk : | 1.0 alert |
Leadlikeness : | 1.0 |
Synthetic accessibility : | 1.12 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H302-H315-H319-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
98% | With silver tetrafluoroborate; 4,4'-Dimethoxy-2,2'-bipyridin; potassium <i>tert</i>-butylate; hydrogen In 1,4-dioxane at 80℃; for 24 h; Autoclave | In Example 1, the m-nitroacetophenone used was replaced with an equimolar 5-nitroindole, and at a hydrogen pressure of4.0 MPa for 24 hours at 80 ° C. The other procedure was the same as in Example 1 to give 5-aminoindole in a yield of 98percent, _: A solution of 16.44 mg (0.04 mmol) 4,4'-dimethoxy-2,2'-bipyridine silver 11.22 mg (0.1 mmol) of potassuim t-butoxide and 1 mL of 1,4-dioxane were charged into an autoclave. After stirring, 165.15 mg (1 mmol) of m-nitroacetophenone was added and the mixture was stirred at 80 °C. The reaction was carried out for 8 hours. After the reaction has finishedm the reaction solution was extracted with water and dichloromethane to collect the organic phase. Then, the organic phase was dried over anhydrous Na2SO4, suction filtered, rotary evaporated and chromatographed to give a yellow solid 3-acetanilide. Yield 96 percent. |
96% | With hydrogen In ethanol; ethyl acetate | To reduce a given model compound (5-nitroindol) in accordance with the above reaction scheme (to 5-aminoindol), the reservoir 104 of the hydrogenation apparatus 100 was filled with, as a sample solution, a stock solution of a 1:1 mixture of EtOAc:EtOH containing 5-nitroindol in a concentration of 0.05 mol/dm3. At the same time, a catalyst of 10percent by weight bone black palladium (Pd) or Raney nickel was arranged within the reactor 110 as the catalyst packing. After this, a flow rate of 0.1 ml/s was set within the apparatus by means of the feed pump 102, while a pressure of 30 bar was generated in the flow path by means of the pressure-adjusting unit 112. During the operation of the apparatus these values were continuously maintained. The produced hydrogenate, i.e. the 5-aminoindol was collected in the product receptacle 114, and then was subjected to an analytical assay (HPLC UV, λ=254 nm). As a result of the analysis, we concluded that the collected hydrogenate was of the purity of 99.9percent, and the yield of the reaction was about 96percent. |
94% | With sodium tetrahydroborate In methanol; water at 0 - 50℃; for 2 h; | General procedure: A mixture of nitroarene (1 mmol), SS-Pd (2 molpercent Pd) and sodium borohydride (3 mmol) were taken in a 25 ml round bottomed flask. 3 ml of MeOH:H2O (3:7) was added to the mixture by a syringe at 0 oC in stirring condition. After 10 minutes the reaction mixture was heated to 50 oC. Progress of the reaction was monitored by TLC. On completion, the reaction mixture was extracted with ethylacetate and dried over anhydrous Na2SO4. Evaporation of the combined organic layer and followed by column chromatography over silica gel (60-120 mesh) afforded desired corresponding amines. |
92.5% | With hydrogen In ethanol for 3 h; | A mixture of 5-nitro-1H-indole (11 g, 67.9 mmol) and Pd/C (5percent; 1 g), dissolved in ethanol (50 mL), was hydrogenated for 3 h at 40 psi. The reaction mixture was filtered and the excess of ethanol was evaporated under reduced pressure. Solid product was recrystallized from hexane to obtain the pure compound 5-aminoindole (55-1). Yield: 92.5percent. 1H NMR (500 MHz, CDCI3): δ 7.96 (br, 1 H), 7.20 (d, 1 H), 7.13 (s, 1 H), 6.95 (s, 1 H), 6.67 (dd, 1 H), 6.37 (s, 1 H), 3.50 (s, 2 H). MS (ESI) mJz 133.0 (M + H)+. |
90% | With sodium tetrahydroborate; PdCu/graphene (2 mol % Pd) In ethanol; water at 0 - 50℃; | General procedure: A mixture of nitroarene (1 mmol), PdCu/graphene (6 mg) and sodium borohydride (2mmol) were taken in a 25 mL reaction tube. 3 mL of EtOH:H2O (1:2 in volume ratio) was added by a syringe at 0°C. After 10 min the reaction mixture was placed in an oil bath at 50°C. The reaction was monitored by TLC. On completion, the reaction mixture was extracted with ethylacetate and dried over anhydrous Mg2SO4. Evaporation of the combined organic layer and followed by column chromatography over silica gel (60–120 mesh) afforded desired corresponding amines. |
81% | With hydrazine In ethanol for 2 h; Reflux | 25 mL of hydrazine (98-100percent) are added slowly to a mixture of 25.0 g of 5-nitroindole, 1.2 g of 10percent palladium on carbon and 200 mL of absolute ethanol. After the addition, the resulting reaction mixture is then taken to reflux for 2 hours. The catalyst is eliminated by filtration and the filtrate is evaporated in order to produce a solid yellow residue. The crystals are washed with 200 ml of water and they are dried under vacuum in order to produce 16.5 g (81percent) of 5-aminoindole. Melting point: 131-134° C. |
79% | With hydrazine hydrate In ethanol at 80℃; for 1 h; Inert atmosphere | General procedure: Hydrazine hydrate was chosen as the hydrogen donor for the low emission of pollutants. In a typical procedure, hydrazine hydrate (4 equiv) was added into the reactor which containing fresh prepared catalyst as described above. Then the reactor was put into a preheated oil bath with a stirring speed of 500 rpm, and the substrate (1 mmol)dissolved in 1 mL ethanol was added drop-wisely under argon. The reactions were monitored by TLC. After the reaction, the reaction mixture was vacuum filtered through a pad of silica on a glass-fritted funnel and an additional 15 mL of ethyl acetate (5 mL portions) was used to rinse the product from the silica, the filtrate was concentrated in vacuum and analyzed by GC. Products were purified by column chromatography and identified by 1H NMR and 13C NMR. |
55% | With ammonium formate In tetrahydrofuran; methanol | REFERENCE EXAMPLE 1 Preparation of (1H-indole-5-yl)-amine 5-nitroindole (1.0 g, 6.17 mmol) was dissolved in methanol (10 ml) and anhydrous tetrahydrofuran (10 ml) at room temperature and then, palladium/carbon (10percent) of a catalystic amount and ammonium formate (2.0 g, 31.7 mmol) were added to be stirred slowly at room temperature for 30 minutes. After completing the reaction, the reacting solution was filtered through celite, washed with methanol, concentrated under reduced pressure and then, dropped a silica gel short column. Afterward, the residue was concentrated again under reduced pressure and triturated with isooctane. As a result, the present compound (0.45 g, productive yield 55percent) was obtained as a solid phase. 1H-NMR (400 MHz, CDCl3) δ2.55 (br s, 2H), 6.35 (s, 1H), 6.65 (d, J=8 Hz, 1H), 6.95 (s, 1H), 7.10-7.15 (m, 1H), 7.20 (d, J=8 Hz, 1H), 7.95 (br s, 1H) melting point: 126° C. |
53% | With palladium 10% on activated carbon; hydrogen In ethanol for 2.5 h; | General procedure: General procedure (9): Nitroindole derivative (1 equiv) was dissolved in ethanol (30 ml_ for 20.40 mmol of starting material) and 10percent palladium on carbon (10 mmolpercent) was added. The reaction flask was shaken under hydrogen at 30 psi using the Parr Shaker Hydrogenation Apparatus for 2.5 h. The reaction was filtered over celite and washed with ethyl acetate. The filtrate was concentrated in vacuo and purified by silica gel flash column chromatography to afford the aminoindole product. Intermediate 16 1/-/-indol-5-amine Intermediate 16 (2.7 g, 20.4 mmol) was prepared as a black solid from 5-nitro-1 /-/-indole (6.3 g, 38.9 mmol, 1 equiv) according to general procedure (9) using 1 :1 hexane/ethyl acetate as the eluent for flash silica gel column chromatography. Yield: 53percent. 1H NMR (400 MHz, CDCI3) δ: 7.96 (bs, 1 H), 7.22 - 7.17 (m, 1 H), 7.13 (t, J = 2.8 Hz, 1 H), 6.97 - 6.94 (m, 1 H), 6.67 (dd, J = 8.5, 2.2 Hz, 1 H), 6.39 - 6.37 (m, 1 H), 3.49 (s, 2H). |
53% | With palladium 10% on activated carbon; hydrogen In ethanol for 2.5 h; | 5-nitro-1H-indole (6.3 g, 38.9 mmol, 1 equiv) was dissolved in ethanol (30 mL). 10percent palladium on carbon (630 mg, 10 mmolpercent) was added. The reaction flask was shaken under hydrogen at 30 psi using the Parr Shaker Hydrogenation Apparatus for 2.5 h. The reaction was filtered over celite and washed with ethyl acetate. The filtrate was evaporated, concentrated in vacuo and purified by silica gel flash column chromatography (1:1 hexane/ethyl acetate) to afford intermediate 16 as a black solid (2.7 g, 20.4 mmol). Yield: 53percent. 1H NMR (400 MHz, CDCl3) δ: 7.96 (bs, 1H), 7.22-7.17 (m, 1H), 7.13 (t, J = 2.8 Hz, 1H), 6.97-6.94 (m, 1H), 6.67 (dd, J = 8.5, 2.2 Hz, 1H), 6.39-6.37 (m, 1H), 3.49 (s, 2H). |
51% | Stage #1: With hydrogenchloride; 1,1,1,3',3',3'-hexafluoro-propanol; iron In water at 20℃; for 0.5 h; Stage #2: With sodium hydrogencarbonate In water |
General procedure: The nitro compound (1 equiv), HFIP (10 equiv), Fe powder (5 equiv) were mixed in a tube. Then 2 N HCl aqueous solutions was added to the reaction mixture. After stirring at room temperature for 30 min, the reaction mixture was neutralized with sat. NaHCO3 (aq.) and extracted with EtOAc three times. The combined organic layers were washed with brine, dried over Na2SO4, filtered, and concentrated under reduced pressure. The resulting crude product was then purified by column chromatography on silica gel to furnish the desired amine product. |
152.2 mg | With sodium tetrahydroborate; PdCu/graphene (2 mol % Pd) In ethanol; water at 0℃; for 1.5 h; Heating | General procedure: A mixture of nitroarene (1 mmol), PdCu/graphene (6 mg) and sodium borohydride (2 mmol) were taken in a 25 mL reaction tube. 3 mL of EtOH:H2O (1:2 in volume ratio) was added by a syringe at 0 °C. After 10 min the reaction mixture was placed in an oil bath at 50 C. The reaction was monitored by TLC. On completion, the reaction mixture was extracted with ethylacetate and dried ove ranhydrous Mg2SO4. Evaporation of the combined organic layer andfollowed by column chromatography over silica gel (60-120 mesh) afforded desired corresponding amines. |
80.6 %Chromat. | With ammonium formate; cetyltrimethylammonim bromide In water at 130℃; for 6 h; Inert atmosphere | General procedure: For the catalytic reactions, typically, 0.5 mmol nitroarene,2.5 mL solvent, 189 mg ammonium formate (3.0 mmol), and catalyst (20 mg) were added to a 15 mL pressure bottle reactor (maximum pressure 1.0 MPa, the typical reaction pressure wasless than 0.4 MPa) with magnetic stirring. The atmosphere in the reactor was then replaced with Ar gas three times and tightly sealed. The reactor was placed in an oil bath preheated to the desired temperature. After the set reaction time, the reactor was quenched with cold water and the reaction mixture was diluted with 7.5 mL ethanol. The ethanol solution was analyzed by GC and GC‐MS. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
82% | With ammonium hydroxide; copper(I) iodide; 1-ethylacetoacetate-3-methyl imidazolium hydroxide In acetonitrile at 80℃; for 12 h; Inert atmosphere | General procedure: An oven-dried flask was charged with aryl halide (1.0 mmol), aqueous NH3 (28percent, 1.5 mmol), CuI nanoparticles (0.02 mmol), 4a (3.0 mmol) and acetonitrile (2 mL). The contents were stirred under argon atmosphere at rt for 12 h. After completion of the reaction as monitored by TLC, the product was extracted with diethyl ether (5×5 mL). The organic layer was washed with brine, dried over MgSO4 and concentrated in vacuo. Purification was done on silica gel column, and elution with ethyl acetate–hexane mixture afforded the aminated products. All products obtained herein are known compounds, and were confirmed by 1H NMR, 13C NMR and mass spectroscopic analysis, see Supplementary data for full details. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
81% | at 150℃; for 0.25 h; Microwave irradiation | EXAMPLE 2; Following the procedure set forth in Example 1 (A) above, indole derivatives were deprotected using TFE or HFIP in a microwave reactor at 150° C. as set forth in Table 1 below. |
81% | at 150℃; for 0.25 h; Microwave irradiation | Example 1; (A) A solution of the N-Boc protected amine (1 mmol) in TFE (2,2,2-trifluoroethanol) or HFIP (hexafluoroisopropanol) (5 mL) was placed in a sealed microwave vial. The reaction mixture was heated (100°C or 150°C) in a Biotage - Initiator.(TM). Sixty microwave reactor with stirring until the disappearance of the starting material was observed. After cooling to room temperature, the mixture was evaporated to dryness under reduced pressure. The crude product was purified by flash-column chromatography. 1H NMR and 13C NMR were measured on Bruker Avance DPX-300 NMR or Bruker Avance-300 NMR spectrometers, operating at a proton (1H) frequency of 300.13 MHz and carbon (13C) frequency of 75.43 MHz.Example 2 Following the procedure set forth in Example 1(A) above, indole derivatives were deprotected using TFE or HFIP in a microwave reactor at 150°C as set forth in Table 1 below. |
70% | at 150℃; for 0.25 h; Microwave irradiation | Example 1; (A) A solution of the N-Boc protected amine (1 mmol) in TFE (2,2,2-trifluoroethanol) or HFIP (hexafluoroisopropanol) (5 mL) was placed in a sealed microwave vial. The reaction mixture was heated (100°C or 150°C) in a Biotage - Initiator.(TM). Sixty microwave reactor with stirring until the disappearance of the starting material was observed. After cooling to room temperature, the mixture was evaporated to dryness under reduced pressure. The crude product was purified by flash-column chromatography. 1H NMR and 13C NMR were measured on Bruker Avance DPX-300 NMR or Bruker Avance-300 NMR spectrometers, operating at a proton (1H) frequency of 300.13 MHz and carbon (13C) frequency of 75.43 MHz.Example 2 Following the procedure set forth in Example 1(A) above, indole derivatives were deprotected using TFE or HFIP in a microwave reactor at 150°C as set forth in Table 1 below. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
48.9% | With potassium hydroxide In methanol | B. Via 5-amino-1H-indole To a solution of 1.29 gm (20 mMol) potassium hydroxide in 10 mL methanol were added 1.32 gm (10 mMol) 5-amino-lH-indole followed by 2.46 mL (20 mMol) 1-methyl-4-piperidone. The reaction mixture was then heated to reflux for 18 hours. The reaction mixture was cooled to ambient, diluted with 20 ml water and the precipitate collected by filtration. The solid was recrystallized from ethyl acetate:methanol to give 1.11 gm (48.9percent) 5-amino-3-(1-methyl-1,2,3,6-tetrahydropyr-idin-4-yl)-1H-indole as a tan solid (m.p.=200-203°C). The tan solid was subjected to flash chromatography, eluding with 100:20:0.5 dichloromethane:methanol:ammonium hydroxide, to give 0.99 gm 5-amino-3-(1-methyl-1,2,3,6-tetrahydropyridin-4-yl)-1H-indole as a cream colored solid (m.p.=212-215°C (ethyl acetate:methanol)). MS(m/e): 227(M+) Calculated for C14H17N3: Theory: C, 73.98; H, 7.54; N, 18.49. Found: C, 73.76; H, 7.48; N, 18.22. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
85% | With triethylamine In dichloromethane at 20℃; for 3 h; | General procedure: General procedure (10): To a solution of aminoindole (1.0 equiv) and triethylamine (3.6 equiv) in dichloromethane (10 ml_ for 1.182 mmol of starting material), acetyl chloride (1.2 equiv) was added. The reaction was stirred at room temperature for 3 h. The mixture was poured into water and extracted with dichloromethane 3 times. The combined organic layer was washed with brine, dried over anhydrous sodium sulphate and concentrated in vacuo. Purification by flash silica gel column chromatography afforded the indole-acetamide product. Intermediate 17 A/-(1/-/-indol-5-yl)acetamide Intermediate 17 (177 mg, 1.016 mmol) was prepared as a clear oil from Intermediate 16 (156 mg, 1.182 mmol) according to general procedure (10) using 7:3 hexane/ethyl acetate as the eluent for flash silica gel column chromatography. Yield: 85percent. 1H NMR (400 MHz, CDCI3) δ 8.27 (bs, 1 H), 7.80 (s, 1 H), 7.30 (d, J = 8.5 Hz, 2H), 7.20 (dd, J = 8.8, 2.0 Hz, 2H), 6.50 (s, 1 H), 2.18 (s, 3H). |
85% | With triethylamine In dichloromethane at 20℃; for 3 h; | To a solution of intermediate 16 (156 mg, 1.182 mmol, 1.0 equiv) and triethylamine (591 μL, 429 mg, 4.240 mmol, 3.6 equiv) in DCM (10 mL), acetyl chloride (101 μL, 111 mg, 1.418 mmol, 1.2 equiv) was added. The reaction was stirred at room temperature for 3 h. The mixture was poured into water and extracted with dichloromethane 3 times. The combined organic layer was washed with brine, dried over anhydrous sodium sulphate and concentrated in vacuo. Purification by flash silica gel column chromatography (7:3 hexane/ethyl acetate) afforded intermediate 7g as a clear oil (177 mg, 1.016 mmol). Yield: 85percent. 1H NMR (400 MHz, CDCl3) δ 8.27 (bs, 1H), 7.80 (s, 1H), 7.30 (d, J = 8.5 Hz, 2H), 7.20 (dd, J = 8.8, 2.0 Hz, 2H), 6.50 (s, 1H), 2.18 (s, 3H). |