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[ CAS No. 13061-96-6 ] {[proInfo.proName]}

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Chemical Structure| 13061-96-6
Chemical Structure| 13061-96-6
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Product Details of [ 13061-96-6 ]

CAS No. :13061-96-6 MDL No. :MFCD00002105
Formula : CH5BO2 Boiling Point : -
Linear Structure Formula :- InChI Key :KTMKRRPZPWUYKK-UHFFFAOYSA-N
M.W : 59.86 Pubchem ID :139377
Synonyms :

Calculated chemistry of [ 13061-96-6 ]

Physicochemical Properties

Num. heavy atoms : 4
Num. arom. heavy atoms : 0
Fraction Csp3 : 1.0
Num. rotatable bonds : 0
Num. H-bond acceptors : 2.0
Num. H-bond donors : 2.0
Molar Refractivity : 16.06
TPSA : 40.46 Ų

Pharmacokinetics

GI absorption : High
BBB permeant : No
P-gp substrate : No
CYP1A2 inhibitor : No
CYP2C19 inhibitor : No
CYP2C9 inhibitor : No
CYP2D6 inhibitor : No
CYP3A4 inhibitor : No
Log Kp (skin permeation) : -7.0 cm/s

Lipophilicity

Log Po/w (iLOGP) : 0.0
Log Po/w (XLOGP3) : -0.47
Log Po/w (WLOGP) : -0.91
Log Po/w (MLOGP) : -1.8
Log Po/w (SILICOS-IT) : -1.48
Consensus Log Po/w : -0.93

Druglikeness

Lipinski : 0.0
Ghose : None
Veber : 0.0
Egan : 0.0
Muegge : 2.0
Bioavailability Score : 0.55

Water Solubility

Log S (ESOL) : 0.08
Solubility : 72.8 mg/ml ; 1.22 mol/l
Class : Highly soluble
Log S (Ali) : 0.09
Solubility : 73.1 mg/ml ; 1.22 mol/l
Class : Highly soluble
Log S (SILICOS-IT) : 1.02
Solubility : 622.0 mg/ml ; 10.4 mol/l
Class : Soluble

Medicinal Chemistry

PAINS : 0.0 alert
Brenk : 1.0 alert
Leadlikeness : 1.0
Synthetic accessibility : 1.62

Safety of [ 13061-96-6 ]

Signal Word:Warning Class:N/A
Precautionary Statements:P261-P305+P351+P338 UN#:N/A
Hazard Statements:H315-H319-H335 Packing Group:N/A
GHS Pictogram:

Application In Synthesis of [ 13061-96-6 ]

* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.

  • Upstream synthesis route of [ 13061-96-6 ]
  • Downstream synthetic route of [ 13061-96-6 ]

[ 13061-96-6 ] Synthesis Path-Upstream   1~30

  • 1
  • [ 611-35-8 ]
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  • [ 4295-06-1 ]
Reference: [1] Chemical Science, 2016, vol. 7, # 10, p. 6407 - 6412
  • 2
  • [ 13061-96-6 ]
  • [ 149806-06-4 ]
  • [ 53014-84-9 ]
Reference: [1] Patent: WO2008/16968, 2008, A2, . Location in patent: Page/Page column 70
  • 3
  • [ 6298-19-7 ]
  • [ 13061-96-6 ]
  • [ 3430-10-2 ]
Reference: [1] Tetrahedron, 1998, vol. 54, # 23, p. 6311 - 6318
  • 4
  • [ 4316-97-6 ]
  • [ 13061-96-6 ]
  • [ 67434-65-5 ]
YieldReaction ConditionsOperation in experiment
41% With caesium carbonate In N,N-dimethyl-formamide; toluene at 140℃; for 1 h; Irradiation To a mixture of 4,6-dichloro-5-methylpyrimidine (available from Sigma- Aldrich No.595446) (0.50 g, 3.07 mmol) and tetrakis(triphenylphosphine)palladium (0) (0.18 g, 0.15 mmol) in toluene (6 ml) and DMF (1 ml) was added cesium carbonate (3 g, 9.20 mmol), followed by methylboronic acid (0.20 g, 3.37 mmol). The resulting reaction mixture was heated at 140 0C under microwave irradiation (2 cycles x 30 min), allowed to cool down to room temperature and filtered. Solvents were removed under reduced pressure. The residue was taken-up in EtOAc and washed with a saturated NaHCO3 aqueous solution and brine. The organic phase was separated, dried (Na2SO4), filtered and concentrated to afford the title compound D8 (0.18 g, 1.26 mmol, 41percent yield). UPLC: rt = 0.53 min, peak observed: 143 <n="22"/>(M+1-HC1, 100percent) and 445 (M+1-HC1, 33percent). C6H7ClN2 requires 142. 1H NMR (400 MHz, CDCl3) δ(ppm): 8.70 (s, 1 H), 2.57 (s, 3 H), 2.39 (s, 3 H).
Reference: [1] Patent: WO2009/3997, 2009, A1, . Location in patent: Page/Page column 20-21
  • 5
  • [ 13061-96-6 ]
  • [ 1240045-42-4 ]
  • [ 1075-34-9 ]
Reference: [1] Bioorganic and Medicinal Chemistry Letters, 2010, vol. 20, # 8, p. 2586 - 2590
  • 6
  • [ 5470-18-8 ]
  • [ 13061-96-6 ]
  • [ 18699-87-1 ]
YieldReaction ConditionsOperation in experiment
55% With potassium carbonate In 1,4-dioxane for 24 h; Heating / reflux A mixture of 2-chloro-3-nitropyridine (1.6g, 10.09mmol), Pallac tetrakis(triphenylphosphine) (1170mg, 1.01 mmol), methylboronic acid (665mg, mmol ) and potassium carbonate (4180mg, 30.3 mmol) was refluxed in dioxane 1 days. The reaction was cooled to room temperature, and then filtered. The filtrate concentrated and the residue was purified by flash column chromatography (? EtOAc/Hexanes) to afford 760mg (55percent) of 2-methyl-3-nitropyridine. 1H NMR (CDC 8.71 (tetra, 1.7Hz, 5.0Hz, 1H), 8.26 (tetra, 1.7Hz, 8.3Hz, 1H)1 7.34 (dd, 5.( 8.3Hz, 1 H), 2.85 (s, 3H). MS m/z 139.1(M+H)+.
Reference: [1] Tetrahedron, 1998, vol. 54, # 23, p. 6311 - 6318
[2] Bioorganic and Medicinal Chemistry Letters, 2007, vol. 17, # 15, p. 4232 - 4241
[3] Patent: WO2009/1214, 2008, A2, . Location in patent: Page/Page column 52
[4] Organic and Biomolecular Chemistry, 2005, vol. 3, # 20, p. 3701 - 3706
[5] Patent: US2005/131012, 2005, A1, . Location in patent: Page/Page column 13
[6] Patent: WO2006/25716, 2006, A1, . Location in patent: Page/Page column 12
[7] Patent: WO2006/25717, 2006, A1, . Location in patent: Page/Page column 9
[8] Patent: US2011/152296, 2011, A1, . Location in patent: Page/Page column 12
  • 7
  • [ 5470-18-8 ]
  • [ 13061-96-6 ]
  • [ 584-08-7 ]
  • [ 18699-87-1 ]
Reference: [1] Patent: US5869676, 1999, A,
  • 8
  • [ 13061-96-6 ]
  • [ 1067187-88-5 ]
  • [ 1067187-89-6 ]
  • [ 391-12-8 ]
Reference: [1] Patent: US2008/255192, 2008, A1, . Location in patent: Page/Page column 24
  • 9
  • [ 13061-96-6 ]
  • [ 78686-79-0 ]
  • [ 65169-43-9 ]
YieldReaction ConditionsOperation in experiment
87% With potassium phosphate In water; toluene at 100℃; INTERMEDIATE 31Methyl 2-chloro-5-methylnicotinate; To a solution of methyl 5-bromo-2-chloronicotinate (1.05g, 4.19mmol), K3PO4 (2.95g, 13.90mmol), methylboronic acid (0.32g, 5.26mmol) and tricyclohexylphosphine (0.11g, 0.39mmol) in toluene/water (16ml/0.8ml) under nitrogen atmosphere was added Pd(OAc)2 (0.04g, 0.18mmol). The mixture was heated at 1000C overnight under nitrogen atmosphere. The reaction mixture was then cooled to room temperature and concentrated in vacuum. Ethyl acetate was added to the residue and this organic layer was washed with water, brine, dried over MgSO4, filtered and the solvent evaporated under vacuum to yield the desired product as a yellow oil. Yield=87percent LRMS: m/z 186 (M+1 )+ Retention time: 4.84min
Reference: [1] Patent: WO2008/77639, 2008, A1, . Location in patent: Page/Page column 26
  • 10
  • [ 13061-96-6 ]
  • [ 116632-24-7 ]
  • [ 36340-61-1 ]
YieldReaction ConditionsOperation in experiment
100 mg With (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; caesium carbonate In 1,4-dioxane; water at 100℃; for 18 h; A suspension of 4,6-dichloropyridin-2-amine (1.63 g, 10 mmol), methylboronic acid (0.6 g, 10 mmol), Cs2C03 (9.75 g, 30 mmol), and Pd(dppf)Cl2 (400 mg) in dioxane/water (4: 1, 50 mL) was stirred for 18 hours at 100 °C. The reaction was diluted with water and extracted with EtOAc (50 mLx3). The combined organic layer was washed with water and brine. The resulting solution was concentrated under reduced pressure and the residue was purified via prep-HPLC to afford 4-chloro-6-methylpyridin-2-amine (100 mg) as brown solid. MS ESI calcd. For C6H7C1N2 [M + H]+ 143, found 143.
Reference: [1] Patent: WO2014/153280, 2014, A1, . Location in patent: Paragraph 00163
  • 11
  • [ 13061-96-6 ]
  • [ 885276-93-7 ]
  • [ 51135-70-7 ]
YieldReaction ConditionsOperation in experiment
77% With (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; caesium carbonate In N,N-dimethyl-formamide at 100℃; for 2 h; A solution of ethyl 5-bromopyrazolo[1,5-ajpyridine-3-carboxylate (1.0 g, 3.73 mmol),methylboronic acid (448 mg, 7.46 mmol), Pd(dppf)C12 (545 mg, 0.746 mmol) and C52CO3(2.42 g, 7.46 mmol) was dissolved in DMF (5.0 mL), then the mixture was stirred at 100 °Cfor two hours. It was concentrated, and purified by silica gel chromatography with PE:EA=5: 1to obtain the desired compound as an orange solid (589 mg, 77percent). ESI MS m/z = 204.5[M+Hj.
Reference: [1] Patent: WO2017/15449, 2017, A1, . Location in patent: Page/Page column 342
  • 12
  • [ 13472-85-0 ]
  • [ 13061-96-6 ]
  • [ 13472-56-5 ]
Reference: [1] Green Chemistry, 2017, vol. 19, # 21, p. 5046 - 5053
  • 13
  • [ 22353-40-8 ]
  • [ 13061-96-6 ]
  • [ 51984-62-4 ]
YieldReaction ConditionsOperation in experiment
344 mg With tetrakis(triphenylphosphine) palladium(0); caesium carbonate In 1,4-dioxane at 100℃; for 6 h; Cesium carbonate (338 mg), methylboronic acid (47 mg), and tetrakis(triphenylphosphine)palladium (60 mg) were added to a 1,4-dioxane (3 ml) solution containing 2,3-dichloro-5-nitropyridine (100 mg), followed by stirring at 100°C for 6 hours.
The reaction solution was adjusted to room temperature, and water was added, followed by extraction with ethyl acetate.
The resultant was washed with saturated saline and dried over anhydrous sodium sulfate, the solvent was distilled away under reduced pressure, and 3-chloro-2-methyl-5-nitropyridine (344 mg) was thus obtained.
Reference: [1] Patent: EP2589592, 2018, B1, . Location in patent: Paragraph 1190; 1191
  • 14
  • [ 13061-96-6 ]
  • [ 312299-66-4 ]
  • [ 6443-69-2 ]
Reference: [1] Organic Letters, 2009, vol. 11, # 17, p. 3954 - 3957
  • 15
  • [ 13061-96-6 ]
  • [ 2237-30-1 ]
  • [ 38803-30-4 ]
  • [ 64910-52-7 ]
Reference: [1] Organic Letters, 2009, vol. 11, # 8, p. 1677 - 1680
  • 16
  • [ 13061-96-6 ]
  • [ 586-38-9 ]
  • [ 3168-59-0 ]
Reference: [1] Journal of the American Chemical Society, 2007, vol. 129, # 12, p. 3510 - 3511
  • 17
  • [ 13061-96-6 ]
  • [ 90-04-0 ]
  • [ 10541-78-3 ]
Reference: [1] Organic Letters, 2009, vol. 11, # 8, p. 1677 - 1680
  • 18
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  • [ 38803-30-4 ]
  • [ 64910-52-7 ]
Reference: [1] Organic Letters, 2009, vol. 11, # 8, p. 1677 - 1680
  • 19
  • [ 455-14-1 ]
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  • [ 22864-65-9 ]
YieldReaction ConditionsOperation in experiment
70% With pyridine; copper diacetate In 1,4-dioxane for 6 h; Reflux Intermediate 1: N-Methyl-4-(trifluoromethyl) aniline To a mixture of 4-trifluoromethylaniline (196 mg, 1.2 mmol), copper acetate (550 mg, 3.0 mmol) and pyridine (0.34 mL, 4.2 mmol) in dioxane (6 mL) was added methylboronic acid (181 mg, 3.0 mmol, Aldrich, Catalog number: 165335). The mixture was heated with stirring under reflux for 6 hours. The resulting mixture was filtered. The filtrate was concentrated under vacuum and purified by column chromatography to afford N-methyl-4-(trifluoromethyl)-aniline (150 mg, 70 percent). MS obsd. (ESI+) [(M+H)+]: 176
Reference: [1] Organic Letters, 2009, vol. 11, # 8, p. 1677 - 1680
[2] Patent: WO2016/23877, 2016, A1, . Location in patent: Page/Page column 25
  • 20
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  • [ 50638-46-5 ]
  • [ 54788-38-4 ]
Reference: [1] Patent: US9212182, 2015, B2, . Location in patent: Page/Page column 33
  • 21
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  • [ 77771-02-9 ]
  • [ 135427-08-6 ]
Reference: [1] Journal of Medicinal Chemistry, 2001, vol. 44, # 20, p. 3302 - 3310
  • 22
  • [ 76-09-5 ]
  • [ 13061-96-6 ]
  • [ 94242-85-0 ]
Reference: [1] Chemical Communications, 2012, vol. 48, # 9, p. 1230 - 1232
[2] Journal of the American Chemical Society, 2000, vol. 122, # 23, p. 5455 - 5463
  • 23
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  • [ 1071540-54-9 ]
  • [ 182691-75-4 ]
Reference: [1] Patent: US2018/170909, 2018, A1, . Location in patent: Paragraph 1654; 1655
  • 24
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  • [ 885523-35-3 ]
  • [ 180624-25-3 ]
Reference: [1] Patent: US2012/58986, 2012, A1, . Location in patent: Page/Page column 33
[2] Patent: US2012/77797, 2012, A1, . Location in patent: Page/Page column 32; 33
  • 25
  • [ 13061-96-6 ]
  • [ 22348-32-9 ]
  • [ 112022-81-8 ]
YieldReaction ConditionsOperation in experiment
83% at 40℃; Inert atmosphere; Reflux; Large scale Under nitrogen protection, In a reactor equipped with a reflux water separation device(S)-(+)-2-(diphenylhydroxymethyl)pyrrolidine (2.53 kg, 10 moles) and methylboronic acid (779 g, 13 moles) were added to 7.1 g of n-heptane, Slowly stirring, As the water is constantly being separated, The solution gradually becomes clear, Then adjust the stirring speed to the normal state, When there is no more water, Stop stirring, Slow down to 40 deg C, After standing overnight, Diatomaceous earth temperature filtration, The filtrate was once again cooled to -10 ° C, Stirring for 1.5 hours to complete precipitation, After filtration, 40 deg C in a double cone and dried in vacuo for 8 hours to give 2.30 kg of S-MeCBS, Yield 83percent The product is a white solid, GC: 98.2percent, water content: 0.31percent
Reference: [1] Patent: CN106478703, 2017, A, . Location in patent: Paragraph 0015; 0016
  • 26
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Reference: [1] Helvetica Chimica Acta, 2001, vol. 84, # 2, p. 431 - 472
[2] Synthesis, 2003, # 12, p. 1851 - 1855
[3] Journal of the Chemical Society. Perkin Transactions 2, 2000, # 1, p. 69 - 76
[4] Angewandte Chemie, International Edition, 1998, vol. 37, p. 1987 - 2014[5] Angewandte Chemie, 1998, vol. 110, p. 2092 - 2118
[6] Chemical Communications, 2010, vol. 46, # 45, p. 8624 - 8626
[7] Organic Letters, 2017, vol. 19, # 16, p. 4355 - 4358
  • 27
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  • [ 1259313-58-0 ]
  • [ 566158-47-2 ]
Reference: [1] Tetrahedron, 2010, vol. 66, # 49, p. 9552 - 9559
  • 28
  • [ 872624-52-7 ]
  • [ 13061-96-6 ]
  • [ 872624-53-8 ]
YieldReaction ConditionsOperation in experiment
92% With cesium fluoride In 1,4-dioxane at 20 - 80℃; for 3 h; Step 4; Preparation of Methyl 2-amino-5-methyl-4-trifluoromethylbenzoate; Add cesium fluoride (184.3 g, 1.21 mol), methyl boronic acid (63.7 g, 1.05 mol, 3 molequiv.) andbis(diphenylphosphinoferrocene)palladium(II) chloride (27.83 g, 35.1 mmol)to a solution of methyl 2-amino-5-iodo-4-trifluoromethylbenzoate (121 g, 351 mmol) inanhydrous 1,4-dioxane (2.5 L) at room temperature under an atmosphere of nitrogen andheat the mixture at 80 °C for 3 h. Allow the mixture to cool to room temperature thenpartition between ethyl acetate (2.5 L) and water (2.5 L) and filter through a pad ofCelite.(R). to remove the fine black suspension. Extract the aqueous phase with ethylacetate (2 x 100 mL) and wash the combined organic extracts with brine (1 L). Dry overanhydrous magnesium sulfate, filter and remove the solvent under reduced pressure at 45°C to give a red oil. Purify the residue by column chromatography on silica gel, elutingwith isohexane/ethyl acetate (9:1), to give the title compound as a pale yellow crystallinesolid (75.25 g, 92percent).
Reference: [1] Patent: WO2006/2342, 2006, A1, . Location in patent: Page/Page column 56-57
  • 29
  • [ 13061-96-6 ]
  • [ 1190862-68-0 ]
  • [ 1190862-70-4 ]
YieldReaction ConditionsOperation in experiment
45% With potassium carbonate In 1,4-dioxane at 110℃; for 72 h; Inert atmosphere An oven-dried resealable Schlenk tube was charged with ethyl 5,6-dibromonicotinate (preparation 47b, 1.09 g, 3.5 mmol), methylboronic acid (0.24 g, 4.0 mmol), potassium carbonate (1.46 g, 10.6 mmol) and 1,4-dioxane (27 mL).
The Schlenk tube was subjected to three cycles of evacuation-backfilling with argon, and then tetrakis(triphenylphosphine)palladium(0) (0.41 g, 0.35 mmol) was added.
After three new cycles of evacuation-backfilling with argon, the Schlenk tube was sealed and the mixture was stirred and heated in an oil bath to 110 °C.
After 3 days, the mixture was cooled, filtered through Celite.(R). and the filtrate was evaporated.
Purification of the residue by flash chromatography (97:3 to 9:1 hexanes/ethyl acetate) gave the title compound (0.41 g, 45percent) as a solid.
LRMS (m/z): 244/246 (M+1)+.
1H-NMR δ (CDCl3): 1.41 (t, J=9.0Hz, 3H), 2.74 (s, 3H), 4.41 (q, J=9.0Hz, 2H), 8.40 (d, J=3.0Hz, 1H), 9.01 (d, J=3.0Hz, 1H).
Reference: [1] Patent: EP2108641, 2009, A1, . Location in patent: Page/Page column 55-56
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  • [ 147497-32-3 ]
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  • [ 1082041-78-8 ]
YieldReaction ConditionsOperation in experiment
95.2% With (1,1'-bis(diphenylphosphino)ferrocene)palladium(II) dichloride; sodium carbonate In 1,4-dioxane; water at 105℃; for 16 h; Inert atmosphere To a mixture of 6-bromo-3,4-dihydro-2H-isoquinolin-1-one (19.0 g, 82.4 mmol),CH3B(OH)2 (20.8 g, 329 mmol) and Na2CO3 (18.4 g, 165 mmol) in 1,4-dioxane (200 mL)and water (10.0 mL) is added [1,1’-bis(diphenylphosphino)ferrocene]dichloropalladium (II) (2.46 g, 3.29 mmol) under a nitrogen atmosphere and the mixture is stirred at 105 °C for 16 hours under a nitrogen atmosphere. The suspension is filtered through a pad of diatomaceous earth and the filter cake is washed with DCM (3 x250 mL). The combined filtrates are washed with water (100 mL) and brine (80 mL), dried over Na2SO4, and the solvent isevaporated under reduced pressure. The crude product is purified by silica gel flash chromatography, eluting with a gradient of 0percent to 50percent EtOAc in PE to give the title compound (13.0 g, 95.2percent) as a yellow solid. ES/MS (m/z): 162.0 (M+H), ‘H NIVIR (400MHz, CDC13) 7.94 (d, J=8.0 Hz, 1H), 7.15 (d, J=7.8 Hz, 1H), 7.02 (s, 1H), 6.89 (br s, 1H),3.55 (dt, J=2.9, 6.6 Hz, 2H), 2.94 (t, J=6.5 Hz, 2H), 2.37 (s, 3H).
Reference: [1] Patent: WO2018/160406, 2018, A1, . Location in patent: Page/Page column 10; 11
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