Purity | Size | Price | VIP Price | USA Stock *0-1 Day | Global Stock *5-7 Days | Quantity | |||||
{[ item.p_purity ]} | {[ item.pr_size ]} |
{[ getRatePrice(item.pr_usd, 1,1) ]} {[ getRatePrice(item.pr_usd,item.pr_rate,item.mem_rate) ]} |
{[ getRatePrice(item.pr_usd, 1,1) ]} | Inquiry {[ getRatePrice(item.pr_usd,item.pr_rate,item.mem_rate) ]} {[ getRatePrice(item.pr_usd,1,item.mem_rate) ]} | {[ item.pr_usastock ]} | Inquiry - | {[ item.pr_chinastock ]} | Inquiry - |
* Storage: {[proInfo.prStorage]}
CAS No. : | 150629-67-7 | MDL No. : | MFCD00278818 |
Formula : | C31H36N2O6 | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | AOHSSQNORWQENF-VWLOTQADSA-N |
M.W : | 532.63 | Pubchem ID : | 135404832 |
Synonyms : |
Fmoc-L-Lys(Dde)-OH
|
Chemical Name : | Fmoc-L-Lys(Dde)-OH |
Num. heavy atoms : | 39 |
Num. arom. heavy atoms : | 12 |
Fraction Csp3 : | 0.42 |
Num. rotatable bonds : | 12 |
Num. H-bond acceptors : | 6.0 |
Num. H-bond donors : | 3.0 |
Molar Refractivity : | 148.02 |
TPSA : | 121.8 Ų |
GI absorption : | Low |
BBB permeant : | No |
P-gp substrate : | Yes |
CYP1A2 inhibitor : | No |
CYP2C19 inhibitor : | No |
CYP2C9 inhibitor : | Yes |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | Yes |
Log Kp (skin permeation) : | -5.62 cm/s |
Log Po/w (iLOGP) : | 3.11 |
Log Po/w (XLOGP3) : | 5.54 |
Log Po/w (WLOGP) : | 4.97 |
Log Po/w (MLOGP) : | 2.41 |
Log Po/w (SILICOS-IT) : | 5.41 |
Consensus Log Po/w : | 4.29 |
Lipinski : | 1.0 |
Ghose : | None |
Veber : | 1.0 |
Egan : | 0.0 |
Muegge : | 1.0 |
Bioavailability Score : | 0.55 |
Log S (ESOL) : | -6.07 |
Solubility : | 0.000455 mg/ml ; 0.000000855 mol/l |
Class : | Poorly soluble |
Log S (Ali) : | -7.86 |
Solubility : | 0.00000739 mg/ml ; 0.0000000139 mol/l |
Class : | Poorly soluble |
Log S (SILICOS-IT) : | -8.6 |
Solubility : | 0.00000133 mg/ml ; 0.0000000025 mol/l |
Class : | Poorly soluble |
PAINS : | 0.0 alert |
Brenk : | 2.0 alert |
Leadlikeness : | 3.0 |
Synthetic accessibility : | 5.15 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P280-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H302-H315-H319-H332-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70% | Stage #1: With N-ethyl-N,N-diisopropylamine In water at 20℃; Stage #2: With trifluoroacetic acid In ethanol; water for 60 h; Reflux |
Synthesis of Fmoc-Lys(Dde)-OH Fmoc-Lys-OH.HCl (10.2 g, 25.2 mmol) was dissolved in H2O, N,N-diisopropylethylamine (DIPEA 1.1 eq, 4.8 mL, 27.7 mmol) was added and the resulting solid was collected by filtration and dried in a vacuum oven overnight. To a stirred suspension of Fmoc-Lys-OH (7.9 g, 21.4 mmol, 1 eq) in ethanol (250 mL), Dde-OH (7.8 g, 42.8 mmol, 2 eq) and TFA (160 μL, 2.14 mmol, 0.1 eq) were added. The reaction was refluxed for 60 hours. After the reaction mixture was cooled to room temperature, the solvent was removed in vacuo and the residue was dissolved in EtOAc (300 mL), washed with 1M KHSO4 (2*200 mL) and 1M HCl (2*200 mL). The organic phase was dried over MgSO4, filtered, and evaporated in vacuo. Fmoc-Lys(Dde)-OH was isolated by flash column chromatography (elute with 10percent acetic acid/ethyl acetate) and crystallised from ethyl acetate/hexane as an off white solid (7.5 g, 70percent). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
41% | Stage #1: With hydrogenchloride In 1,4-dioxane at 20℃; for 2 h; Stage #2: With N-ethyl-N,N-diisopropylamine In ethanol for 17 h; Reflux |
Fmoc-Lys(Boc)-OH (5.66 g, 12.1 mmol) was dissolved in 4 M HCl/dioxane (120 mL), and stirred at room temperature for 2 h to remove the side-chain Boc group. The solvent was removed under reduced pressure. The resulting residue was dissolved in EtOH(60 mL), and then 2-acetyldimedone (3.36 g, 18.4 mmol) and DIPEA (6.2 mL, 35.6 mmol) were added. The reaction mixture was refluxed for 17 h. After cooling to room temperature, the solvent was removed under reduced pressure. The residue was dissolved in AcOEt (300 mL) and washed with 1 M HCl (100 mL) and brine (100 mL), dried over Na2SO4, filtered, and concentrated. The resulting residue was purified by silica gel column chromatography(0.5percent–3percent MeOH/DCM) to give Fmoc-Lys(Dde)-OH (2.64 g,41percent) as a white solid. Spectroscopic data are identical to the published data.34 1H NMR (500 MHz, CDCl3): d 13.31 (brs, 1H), 7.75(d, J = 7.8 Hz, 2H), 7.59 (t, J = 7.8 Hz, 2H), 7.38 (t, J = 7.8 Hz, 2H),7.31–7.28 (m, 2H), 5.73 (d, J = 8.0 Hz, 1H), 4.48–4.45 (m, 1H),4.37 (d, J = 7.1 Hz, 2H), 4.20 (t, J = 7.1 Hz, 1H), 3.43–3.40 (m, 2H),2.55 (s, 3H), 2.36 (s, 4H), 2.00–1.50 (m, 6H), 1.01 (s, 6H). HR-MS(m/z, FAB): calcd for C31H37N2O6 ([M + H]+), 533.2652; found,533.2643. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: The linear protected GnRH-III derivatives (Glp-His(Trt)-Trp(Boc)-Ser(tBu)-His(Trt)-Asp(OtBu)-Trp(Boc)-Lys(Mtt)-Pro-Gly-R, Glp-His(Trt)-Trp(Boc)-Lys(Dde)-His(Trt)-Asp(OtBu)-Trp(Boc)-Lys(Mtt)-Pro-Gly-R, Glp-His(Trt)-Trp(Boc)-Lys(Dde)-His(Trt)-Asp(OtBu)-Trp(Boc)-Lys(Boc)-Pro-Gly-R; where R = resin) were prepared manually by solid phase peptide synthesis according to Fmoc/tBu chemistry on a Rink-Amide MBHA resin (0.38 mmol/g coupling capacity). The following Fmoc-protected amino acid derivatives were used: Fmoc-Gly-OH, Fmoc-Pro-OH, Fmoc-Lys(Boc)-OH, Fmoc-Lys(Mtt)-OH, Fmoc-Lys(Dde)-OH, Fmoc-Trp(Boc)-OH, Fmoc-Asp(OtBu)-OH, Fmoc-His(Trt)-OH and Fmoc-Ser(tBu)-OH. Pyroglutamic acid (Glp or |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: The linear protected GnRH-III derivatives (Glp-His(Trt)-Trp(Boc)-Ser(tBu)-His(Trt)-Asp(OtBu)-Trp(Boc)-Lys(Mtt)-Pro-Gly-R, Glp-His(Trt)-Trp(Boc)-Lys(Dde)-His(Trt)-Asp(OtBu)-Trp(Boc)-Lys(Mtt)-Pro-Gly-R, Glp-His(Trt)-Trp(Boc)-Lys(Dde)-His(Trt)-Asp(OtBu)-Trp(Boc)-Lys(Boc)-Pro-Gly-R; where R = resin) were prepared manually by solid phase peptide synthesis according to Fmoc/tBu chemistry on a Rink-Amide MBHA resin (0.38 mmol/g coupling capacity). The following Fmoc-protected amino acid derivatives were used: Fmoc-Gly-OH, Fmoc-Pro-OH, Fmoc-Lys(Boc)-OH, Fmoc-Lys(Mtt)-OH, Fmoc-Lys(Dde)-OH, Fmoc-Trp(Boc)-OH, Fmoc-Asp(OtBu)-OH, Fmoc-His(Trt)-OH and Fmoc-Ser(tBu)-OH. Pyroglutamic acid (Glp or |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Ca. 100% | The linear protected peptide H-D(OBut)-f-K(Dde)-R(Pbf)-G-O-resin was first assembled from H-Gly-2-chlorotrityl resin using conventional Fmoc chemistry. The coupling reactions were carried out by adding a pre-activated solution of N-alpha-Fmoc-protected amino acid (3 equiv), 1-hydroxybenzotriazole (HOBt, 3 equiv), 2-(1H-benzotriazole-1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate (HBTU, 3 equiv), and DIEA (6 equiv) in anhydrous DMF to the resin (1 equiv) and swirled for 2 h. The progress of the coupling was monitored by the Kaiser test. The Fmoc protecting group was removed with a solution of 20% piperidine in DMF for 10 min (2X). The resin was washed with methanol (1 min, 2X) and DMF (1 min, 3X) and used in the subsequent reactions. The linear protected peptide H-D(OBut)-f-K(Dde)-R(Pbf)-G-O-resin was cleaved with with 1% TFA in DCM (8 times). The filtrate was added into a solution of methanol (80 mL) and pyridine (20 mL). After the resulting mixture was concentrated, 100 mL of water was added to precipitate the product i.e. H-D(OBut)-f-K(Dde)-R(Pbf)-G-OH in a nearly quantitative yield. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Rink amide MBHA resin (0.5 g, 0.325 mmol, loading 0.65 mmol/g) was swollen in DMF for 3 hours before Fmoc-deprotection with 20% 4-methylpiperidine in DMF twice (5 and 15 minutes, respectively). The beads were then washed with DMF (3x10 mL), methanol (MeOH) (3x10 mL) and DMF (3x10 mL), respectively. Fmoc-Lys(Dde)-OH ( 0.519 g, 0.975 mmol) was dissolved in a solution of N-Hydroxybenzotriazole (HOBt) (0.149 g, 0.975 mmol) and N,N'-diisopropylcarbidiimide (DIC) (152 uL, 0.975 mmol) in DMF (8 mL), which was then added to the suspension of the beads. The coupling was carried out at room temperature overnight. After filtration, the beads were washed with DMF (3x10 mL), MeOH (3x10 mL), and DMF (3x10 mL), respectively. After removal of Fmoc, the beads were then subjected to two cycles of coupling with and deprotection of the Fmoc-linker in the same manner as described above. The beads were washed with DMF (3x10 mL), MeOH (3x10 mL) and DMF (3x10 mL). Fmoc-Ach-OH (0.365 g, 0.975 mmol) was dissolved in a solution of HOBt (0.149 g, 0.975 mmol) and DIC (152 uL, 0.975 mmol) in DMF, and was then added into the beads. The coupling was carried out at room temperature for 2 hours. After filtration, the beads were washed with DMF (3x10 mL), MeOH (3x10 mL), and DMF (3x10 mL), respectively. The Fmoc deprotection group was removed with 20% 4-methylpiperidine twice ((5 and 15 minutes, respectively)). After washing with DMF, MeOH, and DMF respectively, the beads were then subjected to additional coupling and deprotection cycles stepwise with Fmoc-Aad(OtBu)-OH and Fmoc-Lys(Alloc)-OH in the same manner as described above. After removal of Fmoc, a solution of UPA (0.923 g, 3.25 mmol), HOBt (0.498 g, 3.25 mmol) and DIC (509 mu,, 3.25 mmol) in DMF was added to the beads. The reaction was conducted at room temperature until Kaiser test negative (3 hours to overnight). The beads were washed with DMF (3x10 mL), methanol (3x 10 mL), and DMF (3x10 mL). The Alloc protecting group was removed by treating with Pd(PPh3)4 (0.2 eq.) and PhSiH3 (20eq.) in dichloromethane (DCM), twice (30 minutes, each). A solution of trans-3-(3-pyridyl)acrylic acid (0.37 g, 1.3 mmol), HOBt (0.176 g, 1.3 mmol) and DIC (201 mu, 1 .3 mmol) in DMF (8 mL) was added to the beads. The coupling proceeded at room temperature 4 hours to overnight until Kaiser test was negative. The beads were washed with DMF (5 x 5 mL), MeOH (3 x 5 mL) and DCM (3 x 5 mL). The Dde protecting group was removed with 2% NH2NH2 in DMF twice (5 and 10 minutes, respectively). The beads were washed with DMF, MeOH and DMF, followed by coupling of (4 eq. to resin, 220 mg, 1.3 mmol) Boc-D-Cys(Trt)-OH, HOBt (0.176 g, 1.3 mmol) and DIC (201 iL, 1.3 mmol) in DMF (8 mL). The coupling reaction was conducted at room temperature until Kaiser test negative (4 hours to overnight). The beads were thoroughly washed with DMF, MeOH and DCM, respectively, and then dried under vacuum for 1 hour before adding a cleavage mixture of 82.5% trifluoroacetic acid (TFA): 5% thioanisole: 5% phenol:5% water: 2.5% triisopropylsilane (TIS) (v/v). The cleavage reaction was conducted at room temperature over 2-3 hours. The off-white crude product was precipitated out and washed with cold ether. The purity was determined by analytical reverse phase high performance liquid chromatography (RP-HPLC) and the crude product was used in the next step without further purification. LLP2A-Lys(D-Cys) MALDI-TOF MS [M+H]+: 1502.88 (calculated: 1502.77); [M+Na]+: 1524.88 (calculated: 1524.75). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
70% | Synthesis of Fmoc-Lys(Dde)-OH Fmoc-Lys-OH.HCl (10.2 g, 25.2 mmol) was dissolved in H2O, N,N-diisopropylethylamine (DIPEA 1.1 eq, 4.8 mL, 27.7 mmol) was added and the resulting solid was collected by filtration and dried in a vacuum oven overnight. To a stirred suspension of Fmoc-Lys-OH (7.9 g, 21.4 mmol, 1 eq) in ethanol (250 mL), <strong>[94142-97-9]Dde-OH</strong> (7.8 g, 42.8 mmol, 2 eq) and TFA (160 muL, 2.14 mmol, 0.1 eq) were added. The reaction was refluxed for 60 hours. After the reaction mixture was cooled to room temperature, the solvent was removed in vacuo and the residue was dissolved in EtOAc (300 mL), washed with 1M KHSO4 (2*200 mL) and 1M HCl (2*200 mL). The organic phase was dried over MgSO4, filtered, and evaporated in vacuo. Fmoc-Lys(Dde)-OH was isolated by flash column chromatography (elute with 10% acetic acid/ethyl acetate) and crystallised from ethyl acetate/hexane as an off white solid (7.5 g, 70%). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
The interaction of cyclic and linear RGD peptide ligands withalpha v beta 3 integrin receptor were studied using MolecularOperating Environment software (Details in SupplementaryMaterial). The peptide amphiphiles were synthesized by followingstandard solid phase peptide synthesis procedure. Thecyclic RGD amphiphile (C18-ADA5-cRGDfK) was synthesizedentirely on solid support. Several protocols for synthesisof the cyclic RGD (cRGDfV or cRGDfK) peptide have beenreported and modified for improved yields. The cyclic RGDpeptide was built on solid phase using the protocol reported byMcCusker et al. with some modifications [20]. The O-allylprotected aspartic acid, Fmoc-Asp-OAll (2.5 equivalents)was loaded on the 2-chloro trityl chloride resin in the presenceof 10 equivalents of N,N-diisopropylethylamine (DIPEA) for5 h. After washing the resin with DMF (3 times) and DCM (3times), the amino group was deprotected by treatment with20% piperidine in DMF for 30 min and the wash steps wererepeated. The Fmoc-Gly-OH was added in the presence of 2equivalents of HOBT (hydroxybenzotriazole), 2 equivalentsof HATU (2-(1H-7-azabenzotriazol-1-yl)-1,1,3,3-tetramethyluronium hexafluorophosphate) and 4 equivalents of DIPEA.The subsequent amino acids in the order of Fmoc-Arg(Pbf)OH, Fmoc-Lys-Dde and Fmoc-Phe-OH were conjugatedusing the same deprotection and conjugation protocol.Each conjugation step was performed for 2 h. Allyldeprotection was performed using chloroform and Nmethylmorpholinein the presence of palladium catalyst in aN2 atmosphere for 4 hours followed by amino groupdeprotection using 20% piperidine in DMF. Cyclization wascarried out overnight in the presence of PyBOP (benzotriazol-1-yl-oxytripyrrolidinophosphonium hexafluorophosphate),DIPEA and DMF. This step was repeated for an additional6 h. Further, the 1-(4,4-Dimethyl-2,6-dioxocyclohexylidene)ethyl (Dde) group was specifically cleaved by using 2% hydrazinehydrate in DMF. For synthesis of the amphiphiles, the 8-amino-3,6 dioxaoctanoic acid (ADA) groups were conjugatedto the lysine side chain using the same protocol as for theamino acids. Finally, stearic acid was conjugated in the presenceof PyBOP (4 equivalents) and DIPEA (8 equivalents).The amphiphile was cleaved from the resin by treating withTFA:TIS: H2O (95:2.5:2.5) for 3 hrs. After removal of TFA,the amphiphile was precipitated using ether:hexane (50:50)mixture. The amphiphile was then separated by centrifugationand freeze dried before further analysis. The synthesis oflinear RGD amphiphile (C18-ADA5-RGD) was carried outusing the same protocol as previously reported [18] (SpecificDetails are provided in Supplementary Materials). All amphiphilessynthesized were characterized for molecular weightand purity using Matrix Assisted Laser Desorption/Ionization- Time of Flight (MALDI-TOF) and reversed phaseHPLC (RP-HPLC) respectively. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: The synthesis of all the cyclic peptides was done by following a previously described procedure.41 Briefly, 2-chlorotrityl chloride resin (1.12 mmol/g) was placed in a reactor and suspended in DCM under nitrogen atmosphere. Then a mixture of Fmoc-Asp-OAll (2 equiv) and DIPA (8 equiv) in DCM was added. The resin loading reaction was allowed to proceed for 4-5 h and then the resin was capped by an addition of a few drops of methanol. The Fmoc protecting group was removed with 20% piperidine/DMF(3 x 7 min) and then a linear SPPS was applied using standard Fmoc procedures introducing the AA in the following order: Fmoc-Gly-OH, Fmoc-Asp(Pbf)-OH, Fmoc-Lys(Dde)-OH for 1a or Fmoc-Ser-OH for 1b, Fmoc-D-Phe-OH. All the couplings were performed in DMF with 3-fold excess of AA and 6 equiv of DIPA, using HATU for activation. Each coupling cycle was conducted for 2-3 h. The completion of each coupling reaction and Fmoc removal were monitored by the ninhydrin test. After the coupling of the last AA, the allyl ester was removed from the C-terminus with a mixture of Pd(PPh3)4 (0.3 equiv) and DMBA (6 equiv) in DCM for 4 h. The resin was thoroughly washed with a DMF solution of 0.5 M diethyldithiocarbamic acid sodium salt. Finally, the Fmoc protecting group was removed from the N-terminus and the cyclization reaction was performed by adding a mixture of PyBop (10 equiv), HOBT (10 equiv), DIPA (20 equiv) in NMP and shaking for 5 h. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: The Rink amide resin (1 equiv) was washed with DCM and DMF in the reaction container, and deprotected twice with 20% piperidine in DMF for 10 min each time. The Fmoc-Lys(dde)-OH (5 equiv), HOBt (5 equiv) and DIC (5 equiv) were coupled with resinin 2 mL DMF for 4 h. For peptides 21-24, one PEG linker was coupled to the N-alpha position of the first lysine using Fmoc-NH-(PEG)3-CH2CH2-COOH (MW = 443.50). The DV3 sequence from the Cterminalto the N-terminal was coupled onto the PEG linker with the last D-amino acid protected by Boc group. After the coupling of the DV3 sequence was complete, the dde group of the first coupled lysine was deprotected with 2% hydrazine in DMF. Then, the other PEG linker was coupled onto the epsilon-amino group of the first coupled lysine and the sequence of CXCL121-8 from the C-terminal to N-terminal was coupled onto the PEG linker through Fmoc-L-aa (5 equiv), HOBt (5 equiv) and DIC (5 equiv) in 2 mL DMF. For peptide 20, the DV3 and CXCL121-8 sequences was directly coupled to the alpha and epsilon amino groups of the first lysine, respectively. The Fmoc groups of last amino acids acid was deprotected before washing with DMF and DCM, then the peptide was cleaved from the resin with a cocktail cleavage solution (TFA/H2O/Thiophenol = 90:5:5) for 2 h. The crude peptide was precipitated and washed twice with cold ethyl ether. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: The Rink amide resin (1 equiv) was washed with DCM and DMF in the reaction container, and deprotected twice with 20% piperidine in DMF for 10 min each time. The Fmoc-Lys(dde)-OH (5 equiv), HOBt (5 equiv) and DIC (5 equiv) were coupled with resinin 2 mL DMF for 4 h. For peptides 21-24, one PEG linker was coupled to the N-alpha position of the first lysine using Fmoc-NH-(PEG)3-CH2CH2-COOH (MW = 443.50). The DV3 sequence from the Cterminalto the N-terminal was coupled onto the PEG linker with the last D-amino acid protected by Boc group. After the coupling of the DV3 sequence was complete, the dde group of the first coupled lysine was deprotected with 2% hydrazine in DMF. Then, the other PEG linker was coupled onto the epsilon-amino group of the first coupled lysine and the sequence of CXCL121-8 from the C-terminal to N-terminal was coupled onto the PEG linker through Fmoc-L-aa (5 equiv), HOBt (5 equiv) and DIC (5 equiv) in 2 mL DMF. For peptide 20, the DV3 and CXCL121-8 sequences was directly coupled to the alpha and epsilon amino groups of the first lysine, respectively. The Fmoc groups of last amino acids acid was deprotected before washing with DMF and DCM, then the peptide was cleaved from the resin with a cocktail cleavage solution (TFA/H2O/Thiophenol = 90:5:5) for 2 h. The crude peptide was precipitated and washed twice with cold ethyl ether. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: The Rink amide resin (1 equiv) was washed with DCM and DMF in the reaction container, and deprotected twice with 20% piperidine in DMF for 10 min each time. The Fmoc-Lys(dde)-OH (5 equiv), HOBt (5 equiv) and DIC (5 equiv) were coupled with resinin 2 mL DMF for 4 h. For peptides 21-24, one PEG linker was coupled to the N-alpha position of the first lysine using Fmoc-NH-(PEG)3-CH2CH2-COOH (MW = 443.50). The DV3 sequence from the Cterminalto the N-terminal was coupled onto the PEG linker with the last D-amino acid protected by Boc group. After the coupling of the DV3 sequence was complete, the dde group of the first coupled lysine was deprotected with 2% hydrazine in DMF. Then, the other PEG linker was coupled onto the epsilon-amino group of the first coupled lysine and the sequence of CXCL121-8 from the C-terminal to N-terminal was coupled onto the PEG linker through Fmoc-L-aa (5 equiv), HOBt (5 equiv) and DIC (5 equiv) in 2 mL DMF. For peptide 20, the DV3 and CXCL121-8 sequences was directly coupled to the alpha and epsilon amino groups of the first lysine, respectively. The Fmoc groups of last amino acids acid was deprotected before washing with DMF and DCM, then the peptide was cleaved from the resin with a cocktail cleavage solution (TFA/H2O/Thiophenol = 90:5:5) for 2 h. The crude peptide was precipitated and washed twice with cold ethyl ether. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Fmoc deprotection: In general, to the resin pre-swollen in DCM was added 20% piperidine in DMF and stirred at rt (2x10 min). The solution was drained and the resin washed with DMF (3x10 mL), DCM (3x10 mL) and MeOH (3x10 mL). In the cases were Fmoc 38 SUBSTITUTE SHEET RULE 26 deprotection was done in Cy5 containing peptides, a solution of 2% DBU in DMF (2 x 10 min, rt) was used instead. Aminoacid coupling: A solution of the appropriate D- or L-amino acid (3.0 eq per amine) and Oxyma (3.0 eq) in DMF (0.1 M) was stirred for 10 min. DIC (3.0 eq) was added and stirred for 1 min. The pre-activated mixture was then added to the resin pre-swollen in DCM and the reaction heated at 50C for 30 min. The solution was drained and washed with DMF (3x10 ml_), DCM (3x10 ml_) and MeOH (3x10 ml_). The completion of the coupling and deprotection reactions was monitored by Kaiser test or Chloranil test when secondary amines are involved. The side chain protecting group used was Boc for arginine, tryptophan and lysine. Fmoc-Lys(Dde)-OH was used as orthogonal reagent to introduce the dyes. Coupling of other carboxylic acids: Coupling of {2-[2-(Fmoc-amino)ethoxy]ethoxy}acetic acid (PEG), 5-Carboxyfluorescein (FAM), Fmoc-Lys(N3)-OH and MethylRed-Lys-(4- pentynoyl)-OH was done following the same procedure described for Aminoacid coupling. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Fmoc deprotection: In general, to the resin pre-swollen in DCM was added 20% piperidine in DMF and stirred at rt (2x10 min). The solution was drained and the resin washed with DMF (3x10 mL), DCM (3x10 mL) and MeOH (3x10 mL). In the cases were Fmoc 38 SUBSTITUTE SHEET RULE 26 deprotection was done in Cy5 containing peptides, a solution of 2% DBU in DMF (2 x 10 min, rt) was used instead. Aminoacid coupling: A solution of the appropriate D- or L-amino acid (3.0 eq per amine) and Oxyma (3.0 eq) in DMF (0.1 M) was stirred for 10 min. DIC (3.0 eq) was added and stirred for 1 min. The pre-activated mixture was then added to the resin pre-swollen in DCM and the reaction heated at 50C for 30 min. The solution was drained and washed with DMF (3x10 ml_), DCM (3x10 ml_) and MeOH (3x10 ml_). The completion of the coupling and deprotection reactions was monitored by Kaiser test or Chloranil test when secondary amines are involved. The side chain protecting group used was Boc for arginine, tryptophan and lysine. Fmoc-Lys(Dde)-OH was used as orthogonal reagent to introduce the dyes. Coupling of other carboxylic acids: Coupling of {2-[2-(Fmoc-amino)ethoxy]ethoxy}acetic acid (PEG), 5-Carboxyfluorescein (FAM), Fmoc-Lys(N3)-OH and MethylRed-Lys-(4- pentynoyl)-OH was done following the same procedure described for Aminoacid coupling. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
41% | Fmoc-Lys(Boc)-OH (5.66 g, 12.1 mmol) was dissolved in 4 M HCl/dioxane (120 mL), and stirred at room temperature for 2 h to remove the side-chain Boc group. The solvent was removed under reduced pressure. The resulting residue was dissolved in EtOH(60 mL), and then <strong>[94142-97-9]2-acetyldimedone</strong> (3.36 g, 18.4 mmol) and DIPEA (6.2 mL, 35.6 mmol) were added. The reaction mixture was refluxed for 17 h. After cooling to room temperature, the solvent was removed under reduced pressure. The residue was dissolved in AcOEt (300 mL) and washed with 1 M HCl (100 mL) and brine (100 mL), dried over Na2SO4, filtered, and concentrated. The resulting residue was purified by silica gel column chromatography(0.5%-3% MeOH/DCM) to give Fmoc-Lys(Dde)-OH (2.64 g,41%) as a white solid. Spectroscopic data are identical to the published data.34 1H NMR (500 MHz, CDCl3): d 13.31 (brs, 1H), 7.75(d, J = 7.8 Hz, 2H), 7.59 (t, J = 7.8 Hz, 2H), 7.38 (t, J = 7.8 Hz, 2H),7.31-7.28 (m, 2H), 5.73 (d, J = 8.0 Hz, 1H), 4.48-4.45 (m, 1H),4.37 (d, J = 7.1 Hz, 2H), 4.20 (t, J = 7.1 Hz, 1H), 3.43-3.40 (m, 2H),2.55 (s, 3H), 2.36 (s, 4H), 2.00-1.50 (m, 6H), 1.01 (s, 6H). HR-MS(m/z, FAB): calcd for C31H37N2O6 ([M + H]+), 533.2652; found,533.2643. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Fmoc-Lys (Dde) -OH (Nalpha-Fmoc-Nepsilon-Dde-L-lysine, Nalpha-Fmoc-Nepsilon-Lysine) was added to a reaction vessel of 800 ml in 2-chloro trityl chloride resin (100-200 mesh, Novabiochem 20 g, (21.3 g, 2 eq.) And DIPEA (29.9 ml, 8 eq.) Were added to DCM (700 ml) at room temperature and added to a solution of 12timeReaction during. The reaction solution was removed by filtration, and the synthesized resin was washed sequentially with 500 ml each of DCM (dichlormethane) and MeOH, DCM, and DMF (dimethylformamide).And dried in vacuo to obtain 23 g of compound 1a (Fmoc-Lys (Dde) -O-2-chloro trityl resin) in 99% yield in solid form. Compound 1a and 700 ml of 20% piperidine in DMF were placed in an 800 ml reaction vessel, reacted at room temperature for 5 minutes, and filtered to remove the reaction solution. 700 ml of 20% piperidine in DMF was added one more time and reacted at room temperature for 5 minutes. The reaction solution was removed by filtration, and the synthesized resin was sequentially washed with 500 ml each of DCM, MeOH, DCM and DMF. Fmoc-Lys (Fmoc) -OH (47.3g, 4eq), HOBt (10.8g, 4eq) and DIC (12.4ml, 4eq) were dissolved in 600ml of DMF And reacted at room temperature for 4 hours. The reaction solution was removed by filtration, and the synthesized resin was sequentially washed with 500 ml each of DCM, MeOH, DCM and DMF. And dried in vacuo to obtain 25 g of compound 1b (Fmoc-Lys (Fmoc) -Lys (Dde) -O-2-chloro trityl resin) in a 98% yield in solid phase form. Compound 1b and 700 ml of 20% piperidine in DMF were placed in an 800 ml reaction vessel, reacted at room temperature for 5 minutes, and filtered to remove the reaction solution. 700 ml of 20% piperidine in DMF was added and reacted at room temperature for 5 minutes. The reaction solution was removed by filtration, and the synthesized resin was sequentially washed with 500 ml each of DCM, MeOH, DCM and DMF. | ||
In a reaction vessel of 800 ml, 2-chloro trityl chloride resin (100-200mesh, 20 g of Novabiochem, 1 equivalent) and Fmoc-Lys (Dde) -OH (Nalpha-Fmoc-Nepsilon-Dde-L-lysine, Nalpha-Fmoc-Nepsilon- [1- (4,4-dimethyl-2,6-dioxocyclohexylidene) ethyl] (21.3 g, 2 eq.) And DIPEA (29.9 ml, 8 eq.) Were placed in DCM (700 ml) and reacted at room temperature for 12 hours. The reaction solution was removed by filtration, and the synthesized resin was sequentially washed with 500 ml each of DCM (dichloromethane) and MeOH, DCM, and DMF (dimethylformamide). And dried in vacuo to obtain 23 g of compound 1a (Fmoc-Lys (Dde) -O-2-chloro trityl resin) in 99% yield in solid phase form. Examples 1-2. Synthesis of compound 1b. Compound 1a and 700 ml of 20% piperidine in DMF were placed in an 800 ml reaction vessel, reacted at room temperature for 5 minutes, and filtered to remove the reaction solution. 700 ml of 20% piperidine in DMF was added one more time and reacted at room temperature for 5 minutes. The reaction solution was removed by filtration, and the synthesized resin was sequentially washed with 500 ml each of DCM, MeOH, DCM and DMF. Fmoc-Lys (Fmoc) -OH (47.3g, 4eq), HOBt (10.8g, 4eq) and DIC (12.4ml, 4eq) were dissolved in 600ml of DMF And reacted at room temperature for 4 hours. The reaction solution was removed by filtration, and the synthesized resin was sequentially washed with 500 ml each of DCM, MeOH, DCM and DMF. And dried in vacuo to obtain 25 g of compound 1b (Fmoc-Lys (Fmoc) -Lys (Dde) -O-2-chloro trityl resin) in a 98% yield in solid phase form. Examples 1-3. Compound 1c Synthesis Compound 1b and 700 ml of 20% piperidine in DMF were placed in an 800 ml reaction vessel, reacted at room temperature for 5 minutes, and then filtered to remove the reaction solution. 700 ml of 20% piperidine in DMF was added and reacted at room temperature for 5 minutes. The reaction solution was removed by filtration, and the synthesized resin was sequentially washed with 500 ml each of DCM, MeOH, DCM and DMF. Tert-butyl bromoacetate (59.1 ml, 20 eq.) And DIPEA (69.7 ml, 20 eq.) Were dissolved in 600 ml of DMF and reacted at room temperature for 12 hours. The reaction solution was removed by filtration, and the synthesized resin was washed with 500 ml of DMF. Then, 600 ml of DMF was added to dissolve 1,8-bis (dimethylamino) napthalene (85.7 g, 20 equivalents), tert-butyl bromoacetate (59.1 ml, 20 equivalents) and DIPEA (69.7 ml, 20 equivalents) Respectively. The reaction solution was removed by filtration, and the synthesized resin was sequentially washed with 500 ml of DCM and MeOH, DCM and DMF, respectively. And vacuum drying was conducted to obtain 31 g of tert-butoxycarbonylmethyl 2-Lys (Dde) -O-2-chloro trityl resin in 95% yield in solid form. | ||
In an 800 ml reaction vessel Fmoc-Nepsilon-Dde-L-lysine, Nalpha-Fmoc-Nepsilon- [1- (4,4-dimethyl- 2,6-dioxocyclohexylidene) ethyl] -L-lysine (21.3 g, 2 eq.) And DIPEA (29.9 ml, 8 eq.) Were placed in DCM (700 ml) and reacted at room temperature for 12 hours. The reaction solution was removed by filtration, and the synthesized resin was sequentially washed with 500 ml each of DCM (dichlormethane) and MeOH, DCM, and DMF (dimethylformamide). And dried in vacuo to obtain 23 g of compound 1a (Fmoc-Lys (Dde) -O-2-chloro trityl resin) in 99% yield in solid form. Compound 1a and 700 ml of 20% piperidine in DMF were placed in an 800 ml reaction vessel, reacted at room temperature for 5 minutes, and then filtered to remove the reaction solution. 700 ml of 20% piperidine in DMF was added one more time and reacted at room temperature for 5 minutes. The reaction solution was removed by filtration, and the synthesized resin was sequentially washed with 500 ml each of DCM, MeOH, DCM and DMF. Fmoc-Lys (Fmoc) -OH (47.3g, 4eq), HOBt (10.8g, 4eq) and DIC (12.4ml, 4eq) were dissolved in 600ml of DMF And reacted at room temperature for 4 hours. The reaction solution was removed by filtration, and the synthesized resin was sequentially washed with 500 ml each of DCM, MeOH, DCM and DMF. And dried in vacuo to obtain 25 g of compound 1b (Fmoc-Lys (Fmoc) -Lys (Dde) -O-2-chloro trityl resin) in a 98% yield in solid phase form. Compound 1b and 700 ml of 20% piperidine in DMF were placed in an 800 ml reaction vessel, reacted at room temperature for 5 minutes, and filtered to remove the reaction solution. 700 ml of 20% piperidine in DMF was added and reacted at room temperature for 5 minutes. The reaction solution was removed by filtration, and the synthesized resin was sequentially washed with 500 ml each of DCM, MeOH, DCM and DMF. Tert-butyl bromoacetate (59.1 ml, 20 eq.) And DIPEA (69.7 ml, 20 eq.) Were dissolved in 600 ml of DMF and reacted at room temperature for 12 hours. The reaction solution was removed by filtration, and the synthesized resin was washed with 500 ml of DMF. Then, 600 ml of DMF was added to dissolve 1,8-bis (dimethylamino) napthalene (85.7 g, 20 equivalents), tert-butyl bromoacetate (59.1 ml, 20 equivalents) and DIPEA (69.7 ml, 20 equivalents) Respectively. The reaction solution was removed by filtration, and the synthesized resin was sequentially washed with 500 ml each of DCM, MeOH, DCM and DMF. And vacuum dried to obtain 31 g of tert-butoxycarbonylmethyl 2-Lys (Dde) -O-2-chloro trityl resin in 95% yield in solid form. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
CTC resin (250mg, loading capacity 0.25mmol) was swelled with DCM/DMF (1/1)for an hour and then put into a reaction flask of peptide synthesizer. A mixture of1mmol Fmoc-Asp-OAll, 2.5 ml 0.4 M HATU, 2.5ml 0.8 M DIPEA, and 2.5ml DMFwas added to the reaction flask containing resin. The residue was shaken for 45 mins.After washed three times with DMF, the resin was treated with 20% piperidine untilthe UV detector indicated no more Fmoc was released. Repeat procedures ofcoupling and deblocking were carried out following the above process until thetarget linear peptide H2N-fK(Dde)RGD-OAll is obtained on resin. The the resin wastreated with 730uL PhSiH3 (20eq) in 60mL DMF and 122mg Pd(PPh3)4 (0.35eq) in60mL DCM to remove Allyl protection group overnight. Then, 60mL couplingreagents of PyAOP (625.5mg, 1.2mmol, 4eq), HOBt (162mg,1.2mmol, 4eq) andDMM (216uL, 2.4mmol, 8eq) in 60mL DMF was added to perform theintramolecular cyclization for 12hours. The Dde protection group was removed with5% hydrazine monohydrate in DMF for 5mins twice. The peptide was cleavedfrom the resin using Cocktail R cleavage reagent to afford cyclo(KRGDf). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: The Dau?GnRH-III derivatives were synthesized by solid phase peptide synthesis according to Fmoc/t-Bu chemistry on a RinkAmide MBHA resin (0.73 mmol/g coupling capacity) followed by ligation of Dau (oxime bond) in solution. All peptides were synthesized manually by usage of the following Fmoc-protected amino acid derivatives: Fmoc-Gly-OH, Fmoc-Pro-OH, Fmoc-Lys(Mtt)-OH, Fmoc-Lys(Dde)-OH, Fmoc-Trp-OH,Fmoc-D-Trp-OH, Fmoc-Asp(Ot-Bu)-OH, Fmoc-D-Asp(OtBu)-OH, Fmoc-D-Glu(Ot -Bu)-OH, Fmoc-His(Trt)-OH and Fmoc-Ser(t-Bu)-OH. Pyroglutamic acid (Glp or |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: The Dau-GnRH-III derivatives were synthesized by solid phase peptide synthesis according to Fmoc/t-Bu chemistry on a RinkAmide MBHA resin (0.73 mmol/g coupling capacity) followed by ligation of Dau (oxime bond) in solution. All peptides were synthesized manually by usage of the following Fmoc-protected amino acid derivatives: Fmoc-Gly-OH, Fmoc-Pro-OH, Fmoc-Lys(Mtt)-OH, Fmoc-Lys(Dde)-OH, Fmoc-Trp-OH,Fmoc-D-Trp-OH, Fmoc-Asp(Ot-Bu)-OH, Fmoc-D-Asp(OtBu)-OH, Fmoc-D-Glu(Ot -Bu)-OH, Fmoc-His(Trt)-OH and Fmoc-Ser(t-Bu)-OH. Pyroglutamic acid (Glp or |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
(1) Weigh 1.0g wang resin (Wang Resin Tianjin Nankai Synthetic 1% DVB, 100-200mesh, 0.8- 1.0mmol/g) in a clean, dry reaction tube, Add an appropriate amount of DMF, swelling and activation for about 30 minutes, Then weigh the first amino acid Fmoc-Lys(Dde)-OH (N-fluorenylmethyloxycarbonyl-N'-[1-(4,4-dimethyl-2,6-dioxocyclohexylidene)ethyl]-lysine) 0.2mmol, 40 mg of DMAP (4-dimethylaminopyridine) and 0.3 ml of DIC were added to the reaction tube. DMF was used as a solvent at room temperature for 3.5 hours. After the reaction was completed, the mixture was washed with DMF for 4 to 6 times, and an appropriate amount of pyridine and acetic anhydride were added. The volume ratio was 1:1 and the reaction time was 30 minutes. The reaction was washed with DMF 4 to 6 times. The Fmoc of the amino acid was then removed with a 20% piperidine solution and taken twice for 15 min for 10 min + 5 min. Then wash with DMF 4 times, wash 2 times with methanol, remove a small amount of resin and detect with ninhydrin detection reagent, the test is blue, The next step can be performed. (2) Weigh 0.3mmol of tBu (t-butyl) protected DOTA raw material, HBTU (benzotriazole-N,N,N',N'-tetramethyluronium hexafluorophosphate) 0.3 mmol, DMF as a solvent, 0.5 ml of DIEA (N,N-diisopropylethylamine) was added for 1 hour at room temperature. After the reaction is completed, it is washed with DMF for 4-6 times. The colorless reaction can be detected by the next step. (3) Add 2% hydrazine hydrate in DMF solution to remove Dde (see Fmoc-Lys(Dde)-OH) for 30 min, 10min + 10min + 10min, then wash 4 times with DMF, wash twice with methanol, A small amount of resin was removed and detected with ninhydrin detection reagent. The test was blue, and the next reaction was performed. (4) Weigh FMOC-PEG2-COOH, 0.3mmol, HBTU 0.3mmol, DMF as solvent, 0.5ml of DIEA was added for 1h at room temperature, and the reaction was washed with DMF for 4-6 times. The Fmoc of the amino acid was then stripped off with a 20% piperidine solution for a total of 15 min, 10 min+5 min. After washing with DMF for 4 times and methanol 2 times, a small amount of resin was removed and detected with ninhydrin detection reagent. The test was blue. The next reaction can be performed. (5) Weigh FMOC-Lys(Dde)-COOH, 0.3mmol, HBTU 0.3mmol, DMF as solvent, 0.5ml of DIEA was added for 1h at room temperature, and the reaction was washed with DMF for 4-6 times. The Fmoc of the amino acid was then stripped off with 20% piperidine solution for a total of 15 min in 10 min + 5 min. Then wash with DMF 4 times, wash twice with methanol, remove a small amount of resin with ninhydrin detection reagent detection, detection is blue, The next reaction can be performed. (6) Weigh A (folate-NHS ester) 0.3mmol, DMSO as a solvent, add 5 drops of DIEA, and react at room temperature for 1 hour; After the reaction was complete, it was washed 4 to 6 times with DMF. (7) Remove Dde for 30 minutes by adding 2% hydrazine hydrate in DMF solution. 10min+10min+10min, Then wash four times with DMF, wash twice with methanol, remove a small amount of resin and detect with ninhydrin detection reagent. The test is blue and the next reaction can be performed. (8) Weigh BOC{tert-butyloxycarbonyl}-Lys(Fmoc)-COOH, 0.3mmol, HBTU 0.3mmol, DMF as solvent, add 0.5ml of DIEA for 1h at room temperature, and the reaction is washed with DMF for 4-6 times. The amino acid Fmoc{fluorenylmethyloxycarbonyl} was then stripped off with 20% piperidine solution for a total of 15 min, 10 min + 5 min. Then wash four times with DMF, wash twice with methanol, remove a small amount of resin and test with ninhydrin detection reagent. The test is blue and the next reaction can proceed. (9) Weigh A (folate-NHS ester) 0.3mmol, DMSO as a solvent, add 5 drops of DIEA, and react at room temperature for 1 hour; after completion of the reaction, wash with DMF 4-6 times; wash twice with methanol and drain. (10) Finally cut with 25% trifluoroacetic acid cutting fluid for 2 hours. The reaction solution is filtered by suction to obtain trifluoroacetic acid solution of folic acid. Ether precipitation, centrifugation, and then washed with ether 3 to 5 times, to give a white solid, purified by HPLC, freeze-dried, The target compound was subjected to mass analysis of molecular weight and chemical purity using a high performance liquid chromatography (HPLC) and mass spectrometry (MS). (11) Synthesis of different PEG content (PEGn) folic acid dimers, except in step (4) With FMOC-PEGn-COOH, other synthetic processes are exactly the same as those described above. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
The synthesis of Example 33 (Ac-C+-DTHFPr-C+-rF-PEG2-K(Palmitoyl)-NH2) is representative: The following reagents were used:MB HA rink amide resin (1 equiv)Fmoc_Lys(Dde)-OH (3 equiv)Fmoc-Phe-OH (3 equiv)Fmoc-D-Arg(Pbf)-OH (3 equiv)Fmoc-Cys(Trt)-OH (3 equiv)Fmoc-D-Arg(Pbf)-OH (3 equiv)Fmoc-Pro-OH (3 equiv)Fmoc-Phe-OH (3 equiv)Fmoc-His(Trt)-OH (3 equiv)Fmoc-Thr(OtBu)-OH (3 equiv)Fmoc-Asp(OtBu)-OH (3 equiv)Fmoc-Cys(Trt)-OH (3 equiv)<strong>[867062-95-1]Fmoc-PEG2-OH</strong> (2.5 equiv)Palmitic acid (3 equiv)The peptide was synthesized using standard Fmoc chemistry by manual synthesis. 1. Swell the resin for 30 min in DMF and push out the DMF out of column with nitrogen.2. The Fmoc group was cleaved from the resin by adding 20% (v/v) piperidine in DMF.The resin was allowed to react with the 20% piperidine solution for 20 min. 3. After the Fmoc cleavage from the resin is complete, the 20% piperidine solution is pushed out of the column. The resin is washed 3 times with DMF:4. Preparing (or activating) the amino acid: 3 eq of the amino acid and 2.95 eq of HBTU were weighed and were then dissolved in DMF. 6 eq of DIEA was added to the above solution. The activated solution was then added to the column containing the resin and reacted for about 2 h.5. The resin was drained and the loaded resin was wasged 3 times with DMF. 6. Steps 2-5 were repeated for each amino acid coupling.7. The acetyl group protection was conducted by adding the cocktail of 5% Ac2O/10% NMM 85% DMF. The solution was reacted for about 0.5 h. 8. Boc group protection when necessary was conducted by adding the 3 eq of (Boc)20 and 6 eq of DIEA to the resin in DMF. The reaction mixture was reacted for about 0.5 h.9. The resin was drained and washed with DMF 3 times and with MeOH 3 times. Cleavage and disulfide bond formation:The resulting residue was treated with cocktail of 90%TFA/5%TIPS/2.5%H2O/2.5%EDT (10 mL) and swelled for about 2 h. The crude peptide was precipitated out by ether. Cleavage:The resulting residue was treated with cocktail of 90%TFA/5%TIPS/2.5%H2O/2.5%EDT (10 mL) and swelled for about 2 h. The crude peptide was precipitated out by ether. If no disulfide bond formation was required, the crude peptide was purified by reversed-phase HPLC.Optional Cyclization (disulfide bond formation):The crude peptide was dissolved in H20/ACN (1:1) to adjust the concentration to 1 mM. Then 1 M NH4HC03was added to the above solution to adjust the pH to about 8-9. The solution was allowed to react for about 8 h at room temperature. The reaction was monitored by LCMS. After the reaction was completed, the reaction was quenched by acetic acid to adjust the pH to about 6. The reaction mixure was lyophilized and the resulting solid was purified by reversed- phase HPLC. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: The synthesis of Example 33 (Ac-C+-DTHFPr-C+-rF-PEG2-K(Palmitoyl)-NH2) is representative: The following reagents were used:MB HA rink amide resin (1 equiv)Fmoc_Lys(Dde)-OH (3 equiv)Fmoc-Phe-OH (3 equiv)Fmoc-D-Arg(Pbf)-OH (3 equiv)Fmoc-Cys(Trt)-OH (3 equiv)Fmoc-D-Arg(Pbf)-OH (3 equiv)Fmoc-Pro-OH (3 equiv)Fmoc-Phe-OH (3 equiv)Fmoc-His(Trt)-OH (3 equiv)Fmoc-Thr(OtBu)-OH (3 equiv)Fmoc-Asp(OtBu)-OH (3 equiv)Fmoc-Cys(Trt)-OH (3 equiv)<strong>[867062-95-1]Fmoc-PEG2-OH</strong> (2.5 equiv)Palmitic acid (3 equiv)The peptide was synthesized using standard Fmoc chemistry by manual synthesis. 1. Swell the resin for 30 min in DMF and push out the DMF out of column with nitrogen.2. The Fmoc group was cleaved from the resin by adding 20% (v/v) piperidine in DMF.The resin was allowed to react with the 20% piperidine solution for 20 min. 3. After the Fmoc cleavage from the resin is complete, the 20% piperidine solution is pushed out of the column. The resin is washed 3 times with DMF:4. Preparing (or activating) the amino acid: 3 eq of the amino acid and 2.95 eq of HBTU were weighed and were then dissolved in DMF. 6 eq of DIEA was added to the above solution. The activated solution was then added to the column containing the resin and reacted for about 2 h.5. The resin was drained and the loaded resin was wasged 3 times with DMF. 6. Steps 2-5 were repeated for each amino acid coupling.7. The acetyl group protection was conducted by adding the cocktail of 5% Ac2O/10% NMM 85% DMF. The solution was reacted for about 0.5 h. 8. Boc group protection when necessary was conducted by adding the 3 eq of (Boc)20 and 6 eq of DIEA to the resin in DMF. The reaction mixture was reacted for about 0.5 h.9. The resin was drained and washed with DMF 3 times and with MeOH 3 times. Cleavage and disulfide bond formation:The resulting residue was treated with cocktail of 90%TFA/5%TIPS/2.5%H2O/2.5%EDT (10 mL) and swelled for about 2 h. The crude peptide was precipitated out by ether. Cleavage:The resulting residue was treated with cocktail of 90%TFA/5%TIPS/2.5%H2O/2.5%EDT (10 mL) and swelled for about 2 h. The crude peptide was precipitated out by ether. If no disulfide bond formation was required, the crude peptide was purified by reversed-phase HPLC.Optional Cyclization (disulfide bond formation):The crude peptide was dissolved in H20/ACN (1:1) to adjust the concentration to 1 mM. Then 1 M NH4HC03was added to the above solution to adjust the pH to about 8-9. The solution was allowed to react for about 8 h at room temperature. The reaction was monitored by LCMS. After the reaction was completed, the reaction was quenched by acetic acid to adjust the pH to about 6. The reaction mixure was lyophilized and the resulting solid was purified by reversed- phase HPLC. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
8% | (0234) To enable investigation of introducing non-proteinogenic amino acids (listed in Figure 1) on A20FMDV2 binding activity, biotinylated peptides 1-15 (see Table 1), except for peptide 6, were synthesised by standard Fmoc SPPS on the acid liable (0235) hydroxymethylphenoxypropionic acid linker (HMPP) which delivers a C- terminal carboxylic acid using to the conditions depicted in Scheme 1. The desired peptide sequences were assembled using 20% (0236) piperidine/DMF to remove the Fmoc protecting group and 0- (0237) (benzotriazol-l-yl) -N, N, N ' , N '-tetramethyluronium hexafluorophosphate (HBTU) / DIPEA as coupling reagents. (0238) Since specific binding to the nubetabeta integrin was to be studied by flow cytometry, the native alanine at the second residue in A20FMDV2 (1) and all analogues thereof, were substituted with a biotinylated lysine residue. This substitution has previously been shown to be well tolerated [24,25] . We chose to install the D-biotin moiety by selective deprotection of a 1- ( 4 , 4-dimethyl-2 , 6-dioxocyclohex-l- ylidene ) ethyl (Dde) [19] group on the side chain group followed by condensation with D-biotin using HBTU/DIPEA. (0239) Trifluoroacetic acid (TFA) /H2O/3, 6-dioxa-l , 8-octanedithiol (0240) (DODT) /triisopropylsilane (TIPS) (94:2.5:2.5:1.0, v/v/v/v) effected cleavage of the synthesised peptides from the corresponding (0241) peptidyl-resins . Peptides 1-15 were obtained in good yields ranging from 2%-50% and purity exceeding 99% (see peptide characterization data) . (0242) For the synthesis of peptide 6 containing an i7-L-methyllysine modification we employed an on-resin i7-methylation protocol [22] which furnished peptide 6 in good yield (30%) following TFA-mediated peptide cleavage and RP-HPLC purification. (0243) The lead peptide, A20FMDV2, which contains all naturally-occurring amino acids would be susceptible to degradation by exopeptidases which act on the amino- and carboxy terminuses. To mitigate this, six N- and/or C-terminus-modified and biotinylated A20FDMV2 mimics were prepared wherein we systematically modified the amino and carboxy ends (peptides 16-18) and the N-terminal and C-terminal amino acids (Asnl and Thr20, respectively, peptides 19-21) . N- terminal/C-terminal modified peptides 16-18 were obtained by capping of the N-terminus with acetic anhydride (16) or by employing the Rink amide linker to afford the C-terminal carboxamide (17) or a combination of both (peptide 18) . (0244) Peptide 19, bearing the unnatural D-Asnl in place of the native Asnl at the N-terminus of biotinylated A20FMDV2 (1) was obtained using the synthetic route outlined in Scheme 1 except that the Fmoc-D- Asn(Trt)-OH building block was incorporated into the synthesis as the N-terminal residue. For the preparation of peptides 20 and 21, which contains the unnatural D-Thr at the C-terminus, HMP-anchored resin 27 (see Scheme 1, HMP = hydroxymethylphenoxyacetic acid) was first esterified with Fmoc-D-Thr (tBu) -OH using DIC/DMAP and the sequence then elongated by Fmoc SPPS . (0245) Table 1. List of prepared synthetic peptides [N-term] - XiK (Biotin) VPNLRGDLQVX2AQX3VARX4- [C-term] containing substitutions for the native Lysl6 (peptides 2-6) or Leul3 (peptides 7-15), C- terminal/N-terminal variants (peptides 16-21) and DTPA-modified peptides (22-26) . NB: nomenclature, particularly X position (0246) numbering used in this table is not the same as that used in the claims . (0247) Compound N- Xl X2 X3 X4 C- term. term. (0248) 1 NH2 Asn Leu Lys Thr C02H (0249) 2 NH2 Asn Leu D-Lys Thr C02H (0250) 3 NH2 Asn Leu L-Orn Thr C02H (0251) 1-2,4- (0252) 4 NH2 Asn Leu diaminobutyric Thr C02H acid (0253) 1-2,3- (0254) 5 NH2 Asn Leu diaminopropionic Thr C02H acid (0255) 6 NH2 Asn Leu ZV-L-meth llysine Thr C02H (0256) 7 NH2 Asn aminoisobutyric Lys Thr C02H acid (0257) 8 NH2 Asn L-norvaline Lys Thr C02H (0258) 9 NH2 Asn L-norleucine Lys Thr C02H (0259) 10 NH2 Asn L-allylglycine Lys Thr C02H (0260) L-tert- (0261) 11 NH2 Asn Lys Thr C02H butylalanine (0262) 12 NH2 Asn L-homoleucine Lys Thr C02H (0263) L-2-amino-3- (0264) 13 NH2 Asn ethylpentanoic Lys Thr C02H acid (0265) L- (0266) 14 NH2 Asn Lys Thr C02H cyclohexylalanine (0267) 15 L- (0268) NH2 Asn Lys Thr C02H adamantylglycine (0269) 16 Ac-NH Asn Leu Lys Thr C02H (0270) 17 NH2 Asn Leu Lys Thr CONH2 (0271) 18 Ac-NH Asn Leu Lys Thr CONH2 (0272) 19 D- (0273) NH2 Leu Lys Thr C02H (0274) Asn (0275) 20 D- (0276) NH2 Asn Leu Lys C02H (0277) Thr (0278) 21 D- D- (0279) NH2 Leu Lys C02H (0280) Asn Thr (0281) 22 DTPA- (0282) Asn Leu Lys Thr C02H NH (0283) 23 DTPA- (0284) Asn Leu Lys Thr C02H Gly-NH (0285) 24 DTPA- (0286) Asn Leu Lys Thr CONH2 NH (0287) 25 DTPA- D- (0288) Leu Lys Thr C02H NH Asn (0289) 26 DTPA- D- D- (0290) Leu Lys C02H NH Asn Thr (0291) 1 D -yr% -Q ^ (0292) - -^H Q - (0293) (0294) Scheme 1. Synthetic protocol for the preparation of the biotinylated A20FMDV2 peptide variants. (0295) The results obtained from the binding assays (Table 2, see later) s... |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
22% | (0234) To enable investigation of introducing non-proteinogenic amino acids (listed in Figure 1) on A20FMDV2 binding activity, biotinylated peptides 1-15 (see Table 1), except for peptide 6, were synthesised by standard Fmoc SPPS on the acid liable (0235) hydroxymethylphenoxypropionic acid linker (HMPP) which delivers a C- terminal carboxylic acid using to the conditions depicted in Scheme 1. The desired peptide sequences were assembled using 20% (0236) piperidine/DMF to remove the Fmoc protecting group and 0- (0237) (benzotriazol-l-yl) -N, N, N ' , N '-tetramethyluronium hexafluorophosphate (HBTU) / DIPEA as coupling reagents. (0238) Since specific binding to the nubetabeta integrin was to be studied by flow cytometry, the native alanine at the second residue in A20FMDV2 (1) and all analogues thereof, were substituted with a biotinylated lysine residue. This substitution has previously been shown to be well tolerated [24,25] . We chose to install the D-biotin moiety by selective deprotection of a 1- ( 4 , 4-dimethyl-2 , 6-dioxocyclohex-l- ylidene ) ethyl (Dde) [19] group on the side chain group followed by condensation with D-biotin using HBTU/DIPEA. (0239) Trifluoroacetic acid (TFA) /H2O/3, 6-dioxa-l , 8-octanedithiol (0240) (DODT) /triisopropylsilane (TIPS) (94:2.5:2.5:1.0, v/v/v/v) effected cleavage of the synthesised peptides from the corresponding (0241) peptidyl-resins . Peptides 1-15 were obtained in good yields ranging from 2%-50% and purity exceeding 99% (see peptide characterization data) . (0242) For the synthesis of peptide 6 containing an i7-L-methyllysine modification we employed an on-resin i7-methylation protocol [22] which furnished peptide 6 in good yield (30%) following TFA-mediated peptide cleavage and RP-HPLC purification. (0243) The lead peptide, A20FMDV2, which contains all naturally-occurring amino acids would be susceptible to degradation by exopeptidases which act on the amino- and carboxy terminuses. To mitigate this, six N- and/or C-terminus-modified and biotinylated A20FDMV2 mimics were prepared wherein we systematically modified the amino and carboxy ends (peptides 16-18) and the N-terminal and C-terminal amino acids (Asnl and Thr20, respectively, peptides 19-21) . N- terminal/C-terminal modified peptides 16-18 were obtained by capping of the N-terminus with acetic anhydride (16) or by employing the Rink amide linker to afford the C-terminal carboxamide (17) or a combination of both (peptide 18) . (0244) Peptide 19, bearing the unnatural D-Asnl in place of the native Asnl at the N-terminus of biotinylated A20FMDV2 (1) was obtained using the synthetic route outlined in Scheme 1 except that the Fmoc-D- Asn(Trt)-OH building block was incorporated into the synthesis as the N-terminal residue. For the preparation of peptides 20 and 21, which contains the unnatural D-Thr at the C-terminus, HMP-anchored resin 27 (see Scheme 1, HMP = hydroxymethylphenoxyacetic acid) was first esterified with Fmoc-D-Thr (tBu) -OH using DIC/DMAP and the sequence then elongated by Fmoc SPPS . (0245) Table 1. List of prepared synthetic peptides [N-term] - XiK (Biotin) VPNLRGDLQVX2AQX3VARX4- [C-term] containing substitutions for the native Lysl6 (peptides 2-6) or Leul3 (peptides 7-15), C- terminal/N-terminal variants (peptides 16-21) and DTPA-modified peptides (22-26) . NB: nomenclature, particularly X position (0246) numbering used in this table is not the same as that used in the claims . (0247) Compound N- Xl X2 X3 X4 C- term. term. (0248) 1 NH2 Asn Leu Lys Thr C02H (0249) 2 NH2 Asn Leu D-Lys Thr C02H (0250) 3 NH2 Asn Leu L-Orn Thr C02H (0251) 1-2,4- (0252) 4 NH2 Asn Leu diaminobutyric Thr C02H acid (0253) 1-2,3- (0254) 5 NH2 Asn Leu diaminopropionic Thr C02H acid (0255) 6 NH2 Asn Leu ZV-L-meth llysine Thr C02H (0256) 7 NH2 Asn aminoisobutyric Lys Thr C02H acid (0257) 8 NH2 Asn L-norvaline Lys Thr C02H (0258) 9 NH2 Asn L-norleucine Lys Thr C02H (0259) 10 NH2 Asn L-allylglycine Lys Thr C02H (0260) L-tert- (0261) 11 NH2 Asn Lys Thr C02H butylalanine (0262) 12 NH2 Asn L-homoleucine Lys Thr C02H (0263) L-2-amino-3- (0264) 13 NH2 Asn ethylpentanoic Lys Thr C02H acid (0265) L- (0266) 14 NH2 Asn Lys Thr C02H cyclohexylalanine (0267) 15 L- (0268) NH2 Asn Lys Thr C02H adamantylglycine (0269) 16 Ac-NH Asn Leu Lys Thr C02H (0270) 17 NH2 Asn Leu Lys Thr CONH2 (0271) 18 Ac-NH Asn Leu Lys Thr CONH2 (0272) 19 D- (0273) NH2 Leu Lys Thr C02H (0274) Asn (0275) 20 D- (0276) NH2 Asn Leu Lys C02H (0277) Thr (0278) 21 D- D- (0279) NH2 Leu Lys C02H (0280) Asn Thr (0281) 22 DTPA- (0282) Asn Leu Lys Thr C02H NH (0283) 23 DTPA- (0284) Asn Leu Lys Thr C02H Gly-NH (0285) 24 DTPA- (0286) Asn Leu Lys Thr CONH2 NH (0287) 25 DTPA- D- (0288) Leu Lys Thr C02H NH Asn (0289) 26 DTPA- D- D- (0290) Leu Lys C02H NH Asn Thr (0291) 1 D -yr% -Q ^ (0292) - -^H Q - (0293) (0294) Scheme 1. Synthetic protocol for the preparation of the biotinylated A20FMDV2 peptide variants. (0295) The results obtained from the binding assays (Table 2, see later) s... |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
29% | (0234) To enable investigation of introducing non-proteinogenic amino acids (listed in Figure 1) on A20FMDV2 binding activity, biotinylated peptides 1-15 (see Table 1), except for peptide 6, were synthesised by standard Fmoc SPPS on the acid liable (0235) hydroxymethylphenoxypropionic acid linker (HMPP) which delivers a C- terminal carboxylic acid using to the conditions depicted in Scheme 1. The desired peptide sequences were assembled using 20percent (0236) piperidine/DMF to remove the Fmoc protecting group and 0- (0237) (benzotriazol-l-yl) -N, N, N ' , N '-tetramethyluronium hexafluorophosphate (HBTU) / DIPEA as coupling reagents. (0238) Since specific binding to the nubetabeta integrin was to be studied by flow cytometry, the native alanine at the second residue in A20FMDV2 (1) and all analogues thereof, were substituted with a biotinylated lysine residue. This substitution has previously been shown to be well tolerated [24,25] . We chose to install the D-biotin moiety by selective deprotection of a 1- ( 4 , 4-dimethyl-2 , 6-dioxocyclohex-l- ylidene ) ethyl (Dde) [19] group on the side chain group followed by condensation with D-biotin using HBTU/DIPEA. (0239) Trifluoroacetic acid (TFA) /H2O/3, 6-dioxa-l , 8-octanedithiol (0240) (DODT) /triisopropylsilane (TIPS) (94:2.5:2.5:1.0, v/v/v/v) effected cleavage of the synthesised peptides from the corresponding (0241) peptidyl-resins . Peptides 1-15 were obtained in good yields ranging from 2percent-50percent and purity exceeding 99percent (see peptide characterization data) . (0242) For the synthesis of peptide 6 containing an i\7-L-methyllysine modification we employed an on-resin i\7-methylation protocol [22] which furnished peptide 6 in good yield (30percent) following TFA-mediated peptide cleavage and RP-HPLC purification. (0243) The lead peptide, A20FMDV2, which contains all naturally-occurring amino acids would be susceptible to degradation by exopeptidases which act on the amino- and carboxy terminuses. To mitigate this, six N- and/or C-terminus-modified and biotinylated A20FDMV2 mimics were prepared wherein we systematically modified the amino and carboxy ends (peptides 16-18) and the N-terminal and C-terminal amino acids (Asnl and Thr20, respectively, peptides 19-21) . N- terminal/C-terminal modified peptides 16-18 were obtained by capping of the N-terminus with acetic anhydride (16) or by employing the Rink amide linker to afford the C-terminal carboxamide (17) or a combination of both (peptide 18) . (0244) Peptide 19, bearing the unnatural D-Asnl in place of the native Asnl at the N-terminus of biotinylated A20FMDV2 (1) was obtained using the synthetic route outlined in Scheme 1 except that the Fmoc-D- Asn(Trt)-OH building block was incorporated into the synthesis as the N-terminal residue. For the preparation of peptides 20 and 21, which contains the unnatural D-Thr at the C-terminus, HMP-anchored resin 27 (see Scheme 1, HMP = hydroxymethylphenoxyacetic acid) was first esterified with Fmoc-D-Thr (tBu) -OH using DIC/DMAP and the sequence then elongated by Fmoc SPPS . (0245) Table 1. List of prepared synthetic peptides [N-term] - XiK (Biotin) VPNLRGDLQVX2AQX3VARX4- [C-term] containing substitutions for the native Lysl6 (peptides 2-6) or Leul3 (peptides 7-15), C- terminal/N-terminal variants (peptides 16-21) and DTPA-modified peptides (22-26) . NB: nomenclature, particularly X position (0246) numbering used in this table is not the same as that used in the claims . (0247) Compound N- Xl X2 X3 X4 C- term. term. (0248) 1 NH2 Asn Leu Lys Thr C02H (0249) 2 NH2 Asn Leu D-Lys Thr C02H (0250) 3 NH2 Asn Leu L-Orn Thr C02H (0251) 1-2,4- (0252) 4 NH2 Asn Leu diaminobutyric Thr C02H acid (0253) 1-2,3- (0254) 5 NH2 Asn Leu diaminopropionic Thr C02H acid (0255) 6 NH2 Asn Leu ZV-L-meth llysine Thr C02H (0256) 7 NH2 Asn aminoisobutyric Lys Thr C02H acid (0257) 8 NH2 Asn L-norvaline Lys Thr C02H (0258) 9 NH2 Asn L-norleucine Lys Thr C02H (0259) 10 NH2 Asn L-allylglycine Lys Thr C02H (0260) L-tert- (0261) 11 NH2 Asn Lys Thr C02H butylalanine (0262) 12 NH2 Asn L-homoleucine Lys Thr C02H (0263) L-2-amino-3- (0264) 13 NH2 Asn ethylpentanoic Lys Thr C02H acid (0265) L- (0266) 14 NH2 Asn Lys Thr C02H cyclohexylalanine (0267) 15 L- (0268) NH2 Asn Lys Thr C02H adamantylglycine (0269) 16 Ac-NH Asn Leu Lys Thr C02H (0270) 17 NH2 Asn Leu Lys Thr CONH2 (0271) 18 Ac-NH Asn Leu Lys Thr CONH2 (0272) 19 D- (0273) NH2 Leu Lys Thr C02H (0274) Asn (0275) 20 D- (0276) NH2 Asn Leu Lys C02H (0277) Thr (0278) 21 D- D- (0279) NH2 Leu Lys C02H (0280) Asn Thr (0281) 22 DTPA- (0282) Asn Leu Lys Thr C02H NH (0283) 23 DTPA- (0284) Asn Leu Lys Thr C02H Gly-NH (0285) 24 DTPA- (0286) Asn Leu Lys Thr CONH2 NH (0287) 25 DTPA- D- (0288) Leu Lys Thr C02H NH Asn (0289) 26 DTPA- D- D- (0290) Leu Lys C02H NH Asn Thr (0291) 1 D -yrpercent \?Q ^ (0292) ? -^H Q ? (0293) (0294) Scheme 1. Synthetic protocol for the preparation of the biotinylated A20FMDV2 peptide variants. (0295) The results obtained from th... |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
25% | (0234) To enable investigation of introducing non-proteinogenic amino acids (listed in Figure 1) on A20FMDV2 binding activity, biotinylated peptides 1-15 (see Table 1), except for peptide 6, were synthesised by standard Fmoc SPPS on the acid liable (0235) hydroxymethylphenoxypropionic acid linker (HMPP) which delivers a C- terminal carboxylic acid using to the conditions depicted in Scheme 1. The desired peptide sequences were assembled using 20% (0236) piperidine/DMF to remove the Fmoc protecting group and 0- (0237) (benzotriazol-l-yl) -N, N, N ' , N '-tetramethyluronium hexafluorophosphate (HBTU) / DIPEA as coupling reagents. (0238) Since specific binding to the nubetabeta integrin was to be studied by flow cytometry, the native alanine at the second residue in A20FMDV2 (1) and all analogues thereof, were substituted with a biotinylated lysine residue. This substitution has previously been shown to be well tolerated [24,25] . We chose to install the D-biotin moiety by selective deprotection of a 1- ( 4 , 4-dimethyl-2 , 6-dioxocyclohex-l- ylidene ) ethyl (Dde) [19] group on the side chain group followed by condensation with D-biotin using HBTU/DIPEA. (0239) Trifluoroacetic acid (TFA) /H2O/3, 6-dioxa-l , 8-octanedithiol (0240) (DODT) /triisopropylsilane (TIPS) (94:2.5:2.5:1.0, v/v/v/v) effected cleavage of the synthesised peptides from the corresponding (0241) peptidyl-resins . Peptides 1-15 were obtained in good yields ranging from 2%-50% and purity exceeding 99% (see peptide characterization data) . (0242) For the synthesis of peptide 6 containing an i7-L-methyllysine modification we employed an on-resin i7-methylation protocol [22] which furnished peptide 6 in good yield (30%) following TFA-mediated peptide cleavage and RP-HPLC purification. (0243) The lead peptide, A20FMDV2, which contains all naturally-occurring amino acids would be susceptible to degradation by exopeptidases which act on the amino- and carboxy terminuses. To mitigate this, six N- and/or C-terminus-modified and biotinylated A20FDMV2 mimics were prepared wherein we systematically modified the amino and carboxy ends (peptides 16-18) and the N-terminal and C-terminal amino acids (Asnl and Thr20, respectively, peptides 19-21) . N- terminal/C-terminal modified peptides 16-18 were obtained by capping of the N-terminus with acetic anhydride (16) or by employing the Rink amide linker to afford the C-terminal carboxamide (17) or a combination of both (peptide 18) . (0244) Peptide 19, bearing the unnatural D-Asnl in place of the native Asnl at the N-terminus of biotinylated A20FMDV2 (1) was obtained using the synthetic route outlined in Scheme 1 except that the Fmoc-D- Asn(Trt)-OH building block was incorporated into the synthesis as the N-terminal residue. For the preparation of peptides 20 and 21, which contains the unnatural D-Thr at the C-terminus, HMP-anchored resin 27 (see Scheme 1, HMP = hydroxymethylphenoxyacetic acid) was first esterified with Fmoc-D-Thr (tBu) -OH using DIC/DMAP and the sequence then elongated by Fmoc SPPS . (0245) Table 1. List of prepared synthetic peptides [N-term] - XiK (Biotin) VPNLRGDLQVX2AQX3VARX4- [C-term] containing substitutions for the native Lysl6 (peptides 2-6) or Leul3 (peptides 7-15), C- terminal/N-terminal variants (peptides 16-21) and DTPA-modified peptides (22-26) . NB: nomenclature, particularly X position (0246) numbering used in this table is not the same as that used in the claims . (0247) Compound N- Xl X2 X3 X4 C- term. term. (0248) 1 NH2 Asn Leu Lys Thr C02H (0249) 2 NH2 Asn Leu D-Lys Thr C02H (0250) 3 NH2 Asn Leu L-Orn Thr C02H (0251) 1-2,4- (0252) 4 NH2 Asn Leu diaminobutyric Thr C02H acid (0253) 1-2,3- (0254) 5 NH2 Asn Leu diaminopropionic Thr C02H acid (0255) 6 NH2 Asn Leu ZV-L-meth llysine Thr C02H (0256) 7 NH2 Asn aminoisobutyric Lys Thr C02H acid (0257) 8 NH2 Asn L-norvaline Lys Thr C02H (0258) 9 NH2 Asn L-norleucine Lys Thr C02H (0259) 10 NH2 Asn L-allylglycine Lys Thr C02H (0260) L-tert- (0261) 11 NH2 Asn Lys Thr C02H butylalanine (0262) 12 NH2 Asn L-homoleucine Lys Thr C02H (0263) L-2-amino-3- (0264) 13 NH2 Asn ethylpentanoic Lys Thr C02H acid (0265) L- (0266) 14 NH2 Asn Lys Thr C02H cyclohexylalanine (0267) 15 L- (0268) NH2 Asn Lys Thr C02H adamantylglycine (0269) 16 Ac-NH Asn Leu Lys Thr C02H (0270) 17 NH2 Asn Leu Lys Thr CONH2 (0271) 18 Ac-NH Asn Leu Lys Thr CONH2 (0272) 19 D- (0273) NH2 Leu Lys Thr C02H (0274) Asn (0275) 20 D- (0276) NH2 Asn Leu Lys C02H (0277) Thr (0278) 21 D- D- (0279) NH2 Leu Lys C02H (0280) Asn Thr (0281) 22 DTPA- (0282) Asn Leu Lys Thr C02H NH (0283) 23 DTPA- (0284) Asn Leu Lys Thr C02H Gly-NH (0285) 24 DTPA- (0286) Asn Leu Lys Thr CONH2 NH (0287) 25 DTPA- D- (0288) Leu Lys Thr C02H NH Asn (0289) 26 DTPA- D- D- (0290) Leu Lys C02H NH Asn Thr (0291) 1 D -yr% -Q ^ (0292) - -^H Q - (0293) (0294) Scheme 1. Synthetic protocol for the preparation of the biotinylated A20FMDV2 peptide variants. (0295) The results obtained from the binding assays (Table 2, see later) s... |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
2.5 mg | General procedure: The first four amino acids (from the C-terminus) of peptide 13 were coupled by automated peptide synthesis as described in the general section. Following coupling scheme was used: The remaining two amino acids of peptide 13 were coupled manually using a 5-fold molar excess of amino acid, FIOBt and DIC (75 pmol each) in DMF as solvent. In addition, the whole sequence of peptide 15 was prepared by manual synthesis on a Rink amide AM resin using the same reagent conditions. Following coupling scheme was applied: In case of peptide 15, the resin was treated with a capping solution of 10 % DIPEA and 10 % acetic anhydride in DCM (15 min, 500 pi) after loading with the first C-terminal amino acid. Removal of Fmoc protecting groups after each manual coupling step was accomplished by using 20 % piperidine in DMF (2 x 10 min, 500 mI each). Peptides 14 and 16 were entirely prepared by automated peptide synthesis as described in the general section. The coupling scheme was as follows: The first two C-terminal amino acids of peptide 17 and 18 were coupled by automated peptide synthesis as described in the general section. Following coupling scheme was used:The remaining three amino acids of peptide 17 and 18 were coupled manually using a 3-fold or 5- fold molar excess of the amino acid and a 5-fold molar excess of FIOBt and DIC (75 pmol each) in DMF as solvent. The coupling scheme was as follows: Removal of Fmoc protecting groups after each manual coupling step was accomplished by using 20 % piperidine in DMF (2 x 10 min, 500 pi each). For the removal of the Mmt protecting group in peptide 13, the resin was treated with a cleavage mixture consisting of 2 % TFA, 5 % TIS in DCM (8 x 2 min, 1 ml each). After each deprotection step, the resin was washed with DCM. Finally, the resin was incubated with 5 % DIPEA in DCM (2 x 10 min, 1 ml each). For the cleavage of the Dde protecting group in all other peptides (14-18), the resin was treated with 2 % hydrazine in DMF (10 x 10 min, 1 ml each). In case of peptide 14, the building block Fmoc-L-Dap(Mtt)-OFI was coupled manually in 3-fold molar excess with a 5-fold molar excess of FIOBt and DIC (75 pmol each) to the e-amino group of the C- terminal lysine. DMF was used as solvent and the coupling time was approximately 16 h. For peptide 16, the building block Fmoc-L-Dap(Fmoc)-OFI was coupled manually in 5-fold molar excess with FIOBt and DIC (75 pmol each) in DMF to the C-terminal lysine side-chain. The coupling time was 4 h. Subsequently, removal of the Fmoc protecting groups was achieved by using 20 % piperidine in DMF (2 x 10 min, 500 mI each). 6-TAMRA was coupled manually to peptide 16 using a 2-fold molar excess of the fluorophore, FIATU and DIPEA (30 pmol each) in DMF as solvent for 5 h. Afterwards, removal of the Mtt protecting group in peptide 16 was performed as described for the Mmt deprotection above.The carbaboranes were coupled manually in 3-fold molar excess per free lysine or Dap amino group, except for mlJ9b, which was coupled in 1.5-fold molar excess per free amino group. Coupling reactions were prepared as follows: Peptides 13, 14 and 17: 3 eq. m9b, 5 eq. FIOBt and 5 eq. DIC in DMF as solvent. Peptide 15: 3 eq. bm9x, 4 eq. FIOBt and 4 eq. DIC in DMF. Peptide 16: 3 eq. mlJ9b, 4 eq. FIOBt and 4 eq. DIC in DMF. Peptide 18: 1.5 eq. mlJ9b, 2 eq. FIOBt and 2 eq. DIC in DMF. All coupling reactions were performed overnight for approximately 16 h. Cleavage of conjugates 13-15 and 17 from the resin and simultaneous side chain deprotection was accomplished using a mixture of TFA/TA/EDT (90:7:3, 1 ml) for 3 h. Cleavage of conjugates 16 and 18 from the resin was achieved using a mixture of TFA/FhO (95:5, 1 ml) for 3 h. The crude conjugates were precipitated and washed with an ice-cold mixture of hexane/diethyl ether (3:1, v/v), dissolved in ACN/FI2O and subsequently lyophilized. The first purification of the crude conjugate 13 was performed by preparative RP-HPLC using a C18- column (Phenomenex Jupiter 5u 300 A: 250 mm c 21.2 mm, 5 pm, 300 A) with a flow rate of 10 ml/min and a linear gradient of 50 % to 80 % eluent B in A over 30 min. Conjugate 13 had to be purified a second time using a XBridge C18-column (Waters XBridge Peptide BEH C18 OBD: 250 mm c 19 mm, 10 pm, 130 A) with a flow rate of 15 ml/min and a linear gradient of 50 % to 80 % eluent B in A over 30 min. For purification of conjugate 14, a XBridge C18-column (Waters XBridge Peptide BEH C18 OBD: 250 mm c 19 mm, 10 pm, 130 A) with a flow rate of 15 ml/min and a linear gradient of 30 % to 60 % eluent B in A over 30 min was applied. Purification of the conjugates 15-17 was achieved using a Kinetex C18-column (Phenomenex Kinetex 5u XB-C18: 250 mm c 21.2 mm, 5 pm, 100 A) with a flow rate of 15 ml/min. For conjugate 15 and 16, a linear gradient of 40 % to 70 % eluent B in A over 30 min was used, whereas for conjugate 17 a gradient of 50 % to 80 % eluent B in A over 30 min was applied. Purification of the... |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
9.7 mg | General procedure: The first four amino acids (from the C-terminus) of peptide 13 were coupled by automated peptide synthesis as described in the general section. Following coupling scheme was used: The remaining two amino acids of peptide 13 were coupled manually using a 5-fold molar excess of amino acid, FIOBt and DIC (75 pmol each) in DMF as solvent. In addition, the whole sequence of peptide 15 was prepared by manual synthesis on a Rink amide AM resin using the same reagent conditions. Following coupling scheme was applied: In case of peptide 15, the resin was treated with a capping solution of 10 % DIPEA and 10 % acetic anhydride in DCM (15 min, 500 pi) after loading with the first C-terminal amino acid. Removal of Fmoc protecting groups after each manual coupling step was accomplished by using 20 % piperidine in DMF (2 x 10 min, 500 mI each). Peptides 14 and 16 were entirely prepared by automated peptide synthesis as described in the general section. The coupling scheme was as follows: The first two C-terminal amino acids of peptide 17 and 18 were coupled by automated peptide synthesis as described in the general section. Following coupling scheme was used:The remaining three amino acids of peptide 17 and 18 were coupled manually using a 3-fold or 5- fold molar excess of the amino acid and a 5-fold molar excess of FIOBt and DIC (75 pmol each) in DMF as solvent. The coupling scheme was as follows: Removal of Fmoc protecting groups after each manual coupling step was accomplished by using 20 % piperidine in DMF (2 x 10 min, 500 pi each). For the removal of the Mmt protecting group in peptide 13, the resin was treated with a cleavage mixture consisting of 2 % TFA, 5 % TIS in DCM (8 x 2 min, 1 ml each). After each deprotection step, the resin was washed with DCM. Finally, the resin was incubated with 5 % DIPEA in DCM (2 x 10 min, 1 ml each). For the cleavage of the Dde protecting group in all other peptides (14-18), the resin was treated with 2 % hydrazine in DMF (10 x 10 min, 1 ml each). In case of peptide 14, the building block Fmoc-L-Dap(Mtt)-OFI was coupled manually in 3-fold molar excess with a 5-fold molar excess of FIOBt and DIC (75 pmol each) to the e-amino group of the C- terminal lysine. DMF was used as solvent and the coupling time was approximately 16 h. For peptide 16, the building block Fmoc-L-Dap(Fmoc)-OFI was coupled manually in 5-fold molar excess with FIOBt and DIC (75 pmol each) in DMF to the C-terminal lysine side-chain. The coupling time was 4 h. Subsequently, removal of the Fmoc protecting groups was achieved by using 20 % piperidine in DMF (2 x 10 min, 500 mI each). 6-TAMRA was coupled manually to peptide 16 using a 2-fold molar excess of the fluorophore, FIATU and DIPEA (30 pmol each) in DMF as solvent for 5 h. Afterwards, removal of the Mtt protecting group in peptide 16 was performed as described for the Mmt deprotection above.The carbaboranes were coupled manually in 3-fold molar excess per free lysine or Dap amino group, except for mlJ9b, which was coupled in 1.5-fold molar excess per free amino group. Coupling reactions were prepared as follows: Peptides 13, 14 and 17: 3 eq. m9b, 5 eq. FIOBt and 5 eq. DIC in DMF as solvent. Peptide 15: 3 eq. bm9x, 4 eq. FIOBt and 4 eq. DIC in DMF. Peptide 16: 3 eq. mlJ9b, 4 eq. FIOBt and 4 eq. DIC in DMF. Peptide 18: 1.5 eq. mlJ9b, 2 eq. FIOBt and 2 eq. DIC in DMF. All coupling reactions were performed overnight for approximately 16 h. Cleavage of conjugates 13-15 and 17 from the resin and simultaneous side chain deprotection was accomplished using a mixture of TFA/TA/EDT (90:7:3, 1 ml) for 3 h. Cleavage of conjugates 16 and 18 from the resin was achieved using a mixture of TFA/FhO (95:5, 1 ml) for 3 h. The crude conjugates were precipitated and washed with an ice-cold mixture of hexane/diethyl ether (3:1, v/v), dissolved in ACN/FI2O and subsequently lyophilized. The first purification of the crude conjugate 13 was performed by preparative RP-HPLC using a C18- column (Phenomenex Jupiter 5u 300 A: 250 mm c 21.2 mm, 5 pm, 300 A) with a flow rate of 10 ml/min and a linear gradient of 50 % to 80 % eluent B in A over 30 min. Conjugate 13 had to be purified a second time using a XBridge C18-column (Waters XBridge Peptide BEH C18 OBD: 250 mm c 19 mm, 10 pm, 130 A) with a flow rate of 15 ml/min and a linear gradient of 50 % to 80 % eluent B in A over 30 min. For purification of conjugate 14, a XBridge C18-column (Waters XBridge Peptide BEH C18 OBD: 250 mm c 19 mm, 10 pm, 130 A) with a flow rate of 15 ml/min and a linear gradient of 30 % to 60 % eluent B in A over 30 min was applied. Purification of the conjugates 15-17 was achieved using a Kinetex C18-column (Phenomenex Kinetex 5u XB-C18: 250 mm c 21.2 mm, 5 pm, 100 A) with a flow rate of 15 ml/min. For conjugate 15 and 16, a linear gradient of 40 % to 70 % eluent B in A over 30 min was used, whereas for conjugate 17 a gradient of 50 % to 80 % eluent B in A over 30 min was applied. Purification of the... |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
2 mg | General procedure: The first four amino acids (from the C-terminus) of peptide 13 were coupled by automated peptide synthesis as described in the general section. Following coupling scheme was used: The remaining two amino acids of peptide 13 were coupled manually using a 5-fold molar excess of amino acid, FIOBt and DIC (75 pmol each) in DMF as solvent. In addition, the whole sequence of peptide 15 was prepared by manual synthesis on a Rink amide AM resin using the same reagent conditions. Following coupling scheme was applied: In case of peptide 15, the resin was treated with a capping solution of 10 % DIPEA and 10 % acetic anhydride in DCM (15 min, 500 pi) after loading with the first C-terminal amino acid. Removal of Fmoc protecting groups after each manual coupling step was accomplished by using 20 % piperidine in DMF (2 x 10 min, 500 mI each). Peptides 14 and 16 were entirely prepared by automated peptide synthesis as described in the general section. The coupling scheme was as follows: The first two C-terminal amino acids of peptide 17 and 18 were coupled by automated peptide synthesis as described in the general section. Following coupling scheme was used:The remaining three amino acids of peptide 17 and 18 were coupled manually using a 3-fold or 5- fold molar excess of the amino acid and a 5-fold molar excess of FIOBt and DIC (75 pmol each) in DMF as solvent. The coupling scheme was as follows: Removal of Fmoc protecting groups after each manual coupling step was accomplished by using 20 % piperidine in DMF (2 x 10 min, 500 pi each). For the removal of the Mmt protecting group in peptide 13, the resin was treated with a cleavage mixture consisting of 2 % TFA, 5 % TIS in DCM (8 x 2 min, 1 ml each). After each deprotection step, the resin was washed with DCM. Finally, the resin was incubated with 5 % DIPEA in DCM (2 x 10 min, 1 ml each). For the cleavage of the Dde protecting group in all other peptides (14-18), the resin was treated with 2 % hydrazine in DMF (10 x 10 min, 1 ml each). In case of peptide 14, the building block Fmoc-L-Dap(Mtt)-OFI was coupled manually in 3-fold molar excess with a 5-fold molar excess of FIOBt and DIC (75 pmol each) to the e-amino group of the C- terminal lysine. DMF was used as solvent and the coupling time was approximately 16 h. For peptide 16, the building block Fmoc-L-Dap(Fmoc)-OFI was coupled manually in 5-fold molar excess with FIOBt and DIC (75 pmol each) in DMF to the C-terminal lysine side-chain. The coupling time was 4 h. Subsequently, removal of the Fmoc protecting groups was achieved by using 20 % piperidine in DMF (2 x 10 min, 500 mI each). 6-TAMRA was coupled manually to peptide 16 using a 2-fold molar excess of the fluorophore, FIATU and DIPEA (30 pmol each) in DMF as solvent for 5 h. Afterwards, removal of the Mtt protecting group in peptide 16 was performed as described for the Mmt deprotection above.The carbaboranes were coupled manually in 3-fold molar excess per free lysine or Dap amino group, except for mlJ9b, which was coupled in 1.5-fold molar excess per free amino group. Coupling reactions were prepared as follows: Peptides 13, 14 and 17: 3 eq. m9b, 5 eq. FIOBt and 5 eq. DIC in DMF as solvent. Peptide 15: 3 eq. bm9x, 4 eq. FIOBt and 4 eq. DIC in DMF. Peptide 16: 3 eq. mlJ9b, 4 eq. FIOBt and 4 eq. DIC in DMF. Peptide 18: 1.5 eq. mlJ9b, 2 eq. FIOBt and 2 eq. DIC in DMF. All coupling reactions were performed overnight for approximately 16 h. Cleavage of conjugates 13-15 and 17 from the resin and simultaneous side chain deprotection was accomplished using a mixture of TFA/TA/EDT (90:7:3, 1 ml) for 3 h. Cleavage of conjugates 16 and 18 from the resin was achieved using a mixture of TFA/FhO (95:5, 1 ml) for 3 h. The crude conjugates were precipitated and washed with an ice-cold mixture of hexane/diethyl ether (3:1, v/v), dissolved in ACN/FI2O and subsequently lyophilized. The first purification of the crude conjugate 13 was performed by preparative RP-HPLC using a C18- column (Phenomenex Jupiter 5u 300 A: 250 mm c 21.2 mm, 5 pm, 300 A) with a flow rate of 10 ml/min and a linear gradient of 50 % to 80 % eluent B in A over 30 min. Conjugate 13 had to be purified a second time using a XBridge C18-column (Waters XBridge Peptide BEH C18 OBD: 250 mm c 19 mm, 10 pm, 130 A) with a flow rate of 15 ml/min and a linear gradient of 50 % to 80 % eluent B in A over 30 min. For purification of conjugate 14, a XBridge C18-column (Waters XBridge Peptide BEH C18 OBD: 250 mm c 19 mm, 10 pm, 130 A) with a flow rate of 15 ml/min and a linear gradient of 30 % to 60 % eluent B in A over 30 min was applied. Purification of the conjugates 15-17 was achieved using a Kinetex C18-column (Phenomenex Kinetex 5u XB-C18: 250 mm c 21.2 mm, 5 pm, 100 A) with a flow rate of 15 ml/min. For conjugate 15 and 16, a linear gradient of 40 % to 70 % eluent B in A over 30 min was used, whereas for conjugate 17 a gradient of 50 % to 80 % eluent B in A over 30 min was applied. Purification of the... |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
5.8 mg | General procedure: The first four amino acids (from the C-terminus) of peptide 13 were coupled by automated peptide synthesis as described in the general section. Following coupling scheme was used: The remaining two amino acids of peptide 13 were coupled manually using a 5-fold molar excess of amino acid, FIOBt and DIC (75 pmol each) in DMF as solvent. In addition, the whole sequence of peptide 15 was prepared by manual synthesis on a Rink amide AM resin using the same reagent conditions. Following coupling scheme was applied: In case of peptide 15, the resin was treated with a capping solution of 10 % DIPEA and 10 % acetic anhydride in DCM (15 min, 500 pi) after loading with the first C-terminal amino acid. Removal of Fmoc protecting groups after each manual coupling step was accomplished by using 20 % piperidine in DMF (2 x 10 min, 500 mI each). Peptides 14 and 16 were entirely prepared by automated peptide synthesis as described in the general section. The coupling scheme was as follows: The first two C-terminal amino acids of peptide 17 and 18 were coupled by automated peptide synthesis as described in the general section. Following coupling scheme was used:The remaining three amino acids of peptide 17 and 18 were coupled manually using a 3-fold or 5- fold molar excess of the amino acid and a 5-fold molar excess of FIOBt and DIC (75 pmol each) in DMF as solvent. The coupling scheme was as follows: Removal of Fmoc protecting groups after each manual coupling step was accomplished by using 20 % piperidine in DMF (2 x 10 min, 500 pi each). For the removal of the Mmt protecting group in peptide 13, the resin was treated with a cleavage mixture consisting of 2 % TFA, 5 % TIS in DCM (8 x 2 min, 1 ml each). After each deprotection step, the resin was washed with DCM. Finally, the resin was incubated with 5 % DIPEA in DCM (2 x 10 min, 1 ml each). For the cleavage of the Dde protecting group in all other peptides (14-18), the resin was treated with 2 % hydrazine in DMF (10 x 10 min, 1 ml each). In case of peptide 14, the building block Fmoc-L-Dap(Mtt)-OFI was coupled manually in 3-fold molar excess with a 5-fold molar excess of FIOBt and DIC (75 pmol each) to the e-amino group of the C- terminal lysine. DMF was used as solvent and the coupling time was approximately 16 h. For peptide 16, the building block Fmoc-L-Dap(Fmoc)-OFI was coupled manually in 5-fold molar excess with FIOBt and DIC (75 pmol each) in DMF to the C-terminal lysine side-chain. The coupling time was 4 h. Subsequently, removal of the Fmoc protecting groups was achieved by using 20 % piperidine in DMF (2 x 10 min, 500 mI each). 6-TAMRA was coupled manually to peptide 16 using a 2-fold molar excess of the fluorophore, FIATU and DIPEA (30 pmol each) in DMF as solvent for 5 h. Afterwards, removal of the Mtt protecting group in peptide 16 was performed as described for the Mmt deprotection above.The carbaboranes were coupled manually in 3-fold molar excess per free lysine or Dap amino group, except for mlJ9b, which was coupled in 1.5-fold molar excess per free amino group. Coupling reactions were prepared as follows: Peptides 13, 14 and 17: 3 eq. m9b, 5 eq. FIOBt and 5 eq. DIC in DMF as solvent. Peptide 15: 3 eq. bm9x, 4 eq. FIOBt and 4 eq. DIC in DMF. Peptide 16: 3 eq. mlJ9b, 4 eq. FIOBt and 4 eq. DIC in DMF. Peptide 18: 1.5 eq. mlJ9b, 2 eq. FIOBt and 2 eq. DIC in DMF. All coupling reactions were performed overnight for approximately 16 h. Cleavage of conjugates 13-15 and 17 from the resin and simultaneous side chain deprotection was accomplished using a mixture of TFA/TA/EDT (90:7:3, 1 ml) for 3 h. Cleavage of conjugates 16 and 18 from the resin was achieved using a mixture of TFA/FhO (95:5, 1 ml) for 3 h. The crude conjugates were precipitated and washed with an ice-cold mixture of hexane/diethyl ether (3:1, v/v), dissolved in ACN/FI2O and subsequently lyophilized. The first purification of the crude conjugate 13 was performed by preparative RP-HPLC using a C18- column (Phenomenex Jupiter 5u 300 A: 250 mm c 21.2 mm, 5 pm, 300 A) with a flow rate of 10 ml/min and a linear gradient of 50 % to 80 % eluent B in A over 30 min. Conjugate 13 had to be purified a second time using a XBridge C18-column (Waters XBridge Peptide BEH C18 OBD: 250 mm c 19 mm, 10 pm, 130 A) with a flow rate of 15 ml/min and a linear gradient of 50 % to 80 % eluent B in A over 30 min. For purification of conjugate 14, a XBridge C18-column (Waters XBridge Peptide BEH C18 OBD: 250 mm c 19 mm, 10 pm, 130 A) with a flow rate of 15 ml/min and a linear gradient of 30 % to 60 % eluent B in A over 30 min was applied. Purification of the conjugates 15-17 was achieved using a Kinetex C18-column (Phenomenex Kinetex 5u XB-C18: 250 mm c 21.2 mm, 5 pm, 100 A) with a flow rate of 15 ml/min. For conjugate 15 and 16, a linear gradient of 40 % to 70 % eluent B in A over 30 min was used, whereas for conjugate 17 a gradient of 50 % to 80 % eluent B in A over 30 min was applied. Purification of the... |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
2.A Loading of Fmoc-Lys(Ac)-OH on Rink Amide Resin (0433) In a 100 ml reactor equipped with a sintered glass at the bottom, 6 g of Novabiochem or ChemImpex Rink amide AM resin (Low Loading 0.47 mmol/g) was swelled in 40 ml of DMF. The solvent was drained and 30 ml of 20% piperidine in DMF solution were added. After 15 min shaking, the solvent was drained. This was repeated twice to ensure complete Fmoc protecting group removal. The resin was washed with 5×30 ml DMF. (0434) In a separate flask a solution containing Fmoc-Lys(Ac)-OH (3.5 g, 8 mmol, 3 eq.) HOBT.H2O (1.3 g 8.5 mmol) in 30 ml DMF was prepared. Diisopropylcarbodiimide (DIC) (1 g, 8.5 mmol) was added to this solution and after 5 min the resulting mixture was added to the resin. The suspension was shaken on a stirring plate for 4 h or until completion of the reaction as judged by Kaiser Test (Ninhidrin test) on an aliquot part of the resin. (0435) The solvent was then drained and the resin washed 3 times with 30 ml DMF. Fmoc-Lys(Ac)-NH2 loaded resin was used immediately for subsequent steps or stored wet at 4 C. until needed. (0436) 2.B. Synthesis of Peptide Having the SEQ ID NO: 3 (0437) The following synthesis was performed using 5 times an amount of resin obtained at step 2.A. corresponding to 0.2 mmol of Fmoc-Lys(Ac)-NH2 each. The syntheses were performed separately on each individual batches using a CEM Liberty Blue microwave peptide synthesizer to assemble the second and third residue of the peptide sequence (starting from the C-terminus). (0438) Peptide synthesis was performed by using DIC 0.5M/Oxyma 1M in DMF. (0439) All amino acids were introduced with double couplings using standard heating protocol. (0440) The resin was removed from the synthesizer and Fmoc-alpha-methyl-lysine(Boc)-OH (3 eq.) was coupled manually using 3 eq. Oxyma and 3 eq. DIC with microwave heating (75 C. 15 sec. and 90 C. 110 sec). The completion of the reaction was controlled by Kaiser test. If positive, DIC 3 eq. was added followed by microwave heating as above. When coupling of Fmoc-alpha-methyl-lysine(Boc)-OH was complete the rest of the peptide sequence was assembled using a CEM Liberty Blue microwave peptide synthesizer. (0442) All amino acids were introduced with double couplings at 90 C. as above, with the exception of amino-isobutyric acid at position 21 and serine at position 29 for which a triple coupling at 90 for 2 minutes was performed. Fmoc-Lys(Dde)-OH was used at position 25. (0443) At the end of the 5 syntheses, the 5 batches of resin were combined and transferred into a 50 mL polypropylene syringe and the peptide was acetylated at N-terminus with acetic anhydride (944 10 mmol) in DMF (30 mL) for 20 minutes, repeating the cycle twice. (0444) Then, Dde protecting group on Lysine 25 side chain was removed by percolating 50 mL of a solution of hydrazine 5% w/v in DMF, followed by DMF washes (5×20 ml). The reaction was monitored by Kaiser Test and cleavage of an aliquot part of resin and UPLC/MS analysis. (0445) Three TTDS spacer units were introduced by single coupling by performing three times the following procedure: To the resin a solution of Fmoc-TTDS-OH (1.62 g, 3 mmol) in 30 mL of DMF were added followed by HOAt (5 ml of a 0.6 ml solution in DMF, 3 mmol) and DIC (1 ml, 6 mmol). The syringe was agitated on an orbital table for 18 h. The reaction was monitored by Kaiser Test. The resin was washed with DMF (2×30 mL). Then to the resin, 30 mL of 20% v/v of piperidine in DMF was added. The syringe was agitated on an orbital table for 20 min. This deprotection procedure was repeated a second time and the resin was washed with DMF (2×30 mL) and dichloromethane (3×30 mL). (0446) The three gamma-glutamic acids spacers were introduced by performing a double coupling of each Fmoc-Glu-OtBu. Thus the following procedure was applied three times: To the resin a solution (4S)-5-tert-butoxy-4-(9H-fluoren-9-yl methoxy carbonylamino)-5-oxo-pentanoic acid (Fmoc-Glu-OtBu) (1.275 g, 3 mmol) in of 30 mL of DMF were added followed by HOAt (5 ml of a 0.6 ml solution in DMF 3 mmol) and DIC (1 ml, 6 mmol). The syringe was agitated on an orbital table for 4 h. The resin was washed with DMF (2×20 mL) and the coupling was repeated a second time. The reaction was monitored by Kaiser Test. The resin was washed with DMF (2×30 mL). Then to the resin, 30 mL of 20% v/v of piperidine in DMF was added. The syringe was agitated on an orbital table for 20 min. This deprotection procedure was repeated a second time and the resin was washed with DMF (3×30 mL) and dichloromethane (3×30 mL). (0448) Finally, the peptide was acylated with palmitic acid (768 mg, 3 mmol), HOAt (5 ml of a 0.6 M solution in DMF, 3 mmol) and DIC (1 ml, 6 mmol) activation in DMF (30 mL) for 2.5 h. The resin was washed with DMF (2×30 mL) and dichloromethane (3×30mL) and dried under vacuum. (0449) The cleavage of the peptide from the resin was performed using a solution phenol (6.25 g), water (6.25 mL) and TIPS (3 mL) ... |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
A 2-chloro trityl chloride resin (100-200 mesh, Novabiochem 100 mg, 1 eq.), Fmoc-Lys(Dde)-OH (Na-Fmoc-Nepsilon-Dde-L-lysine, Nalpha-Fmoc-Nepsilon-[1-(4,4-dimethyl-2,6-dioxocyclohexylidene)ethyl]-L-lysine) (106.5 mg, 2 eq.), and diisopropylamine (DIPEA, 69.7 mul, 4 eq.) dissolved in 5 ml of dichloromethane (DCM) were added to a 10 ml reaction vessel, and were reacted at room temperature (23 C.) for 12 hours. The reaction solution was removed by filtration, and the synthesized resin was subsequently washed using 10 ml of each of dichloromethane and methanol (MeOH), dichloromethane, and dimethylformamide (DMF), thereby quantitatively obtaining Compound 1a. Step 2. Synthesis of Compound 1b (Fmoc-Lys(Fmoc)-Lys(Dde)-O-2-chloro trityl Resin) (0147) (0148) 5 ml of 20% piperidine (in DMF) was added to the reaction vessel of step 1 (Compound 1a obtained in step 1), reacted at room temperature for 5 minutes, and filtered to remove the reaction solution. 5 ml of 20% piperidine (in DMF) was added once more, and reacted at room temperature for 5 minutes. The reaction solution was removed by filtration, the synthesized resin was sequentially washed with 10 ml of each of DCM and MeOH, DCM, and DMF, Fmoc-Lys(Fmoc)-OH (236.3 mg, 4 eq.), hydroxybenzotriazole (HOBt, 54.1 mg, 4 eq.), and N,N-diisopropylcarbodiimide (DIC, 61.9 mul, 4 eq.) dissolved in 5 ml of DMF were added, and reacted at room temperature for 2 hours. The reaction solution was removed by filtration, and the synthesized resin was subsequently washed using 10 ml of each of DCM and MeOH, DCM, and DMF, thereby quantitatively obtaining Compound 1b. Step 3. Synthesis of Compound 1c (tert-butoxycarbonylmethyl)2-Lys(tert-butoxycarbonylmethyl)2-Lys(Dde)-O-2-chloro trityl Resin) (0149) (0150) 5 ml of 20% piperidine (in DMF) was added to the reaction vessel of step 2 (Compound 1b obtained in step 2), reacted at room temperature for 5 minutes, and filtered to remove the reaction solution. 5 ml of 20% piperidine (in DMF) was added once more, and reacted at room temperature for 5 minutes. The reaction solution was removed by filtration, the synthesized resin was sequentially washed using 500 ml of each of DCM and MeOH, DCM, and DMF, t-butyl bromoacetate (147.7 mul, 10 eq.) and DIPEA (261.3 mul, 15 eq.) dissolved in 5 ml of DMF were added, and reacted at room temperature for 48 hours. The reaction solution was removed by filtration, and the synthesized resin was subsequently washed using 10 ml of each of DCM and MeOH, DCM, and DMF, thereby quantitatively obtaining Compound 1c. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
The synthetic approach used to synthesize YLL8-Lys(D-Cys) is shown below in Scheme 2. Rink amide MBHA resin (0.5 g, 0.325 mmol, loading 0.65 mmol/g) was swollen in DMF for 3 hours. Fmoc was deprotected with 20% 4-methylpiperidine in DMF twice (5 and 15 minutes, respectively). After filtration, the beads were then washed with DMF (3x10 mL), methanol (MeOH) (3x10 mL) and DMF (3x10 mL), respectively. Fmoc-Lys(Dde)-OH (0.519 g, 0.975 mmol) was dissolved in a solution of 6-C1 HOBt (0.165 g, 0.975 mmol) and DIC (152 pL, 0.975 mmol) in DMF (8 mL), which was then added to the suspension of the beads. The coupling was carried out at room temperature overnight. After filtration, the beads were washed with DMF (3x10 mL), MeOH (3x10 mL), and DMF (3x10 mL), respectively. Fmoc was deprotected with 20% 4-methylpiperidine in DMF (8 mL) twice (5 and 15 minutes, respectively). Fmoc-Linker (0.612 g, 1.3 mmol) was dissolved in a solution of HOBt (0.22 g, 1.3 mmol) and DIC (201 pL, 1.3 mmol) in DMF (8 mL), which was then added to the suspension of the beads. The coupling was carried out at room temperature until Kaiser test is negative. After filtration, the beads were washed with DMF (3x10 mL), MeOH (3x10 mL), and DMF (3x10 mL), respectively. Fmoc was deprotected with 20% 4-methylpiperidine in DMF (8 mL) twice (5 and 15 minutes, respectively). Fmoc-Linker (0.612 g, 1.3 mmol) was dissolved in a solution of HOBt (0.22 g, 1.3 mmol) and DIC (201 pL, 1.3 mmol) in DMF (8 mL), which was then added to the suspension of the beads. The coupling was carried out at room temperature until Kaiser test is negative. After filtration, the beads were washed with DMF (3x10 mL), MeOH (3x10 mL), and DMF (3x10 mL), respectively. Fmoc was deprotected with 20% 4-methylpiperidine in DMF (8 mL) twice (5 and 15 minutes, respectively). After filtration, the beads were washed with DMF (3x10 mL), MeOH (3x10 mL), and DMF (3x10 mL), respectively. Fmoc-Ach-OH (0.365 g, 0.975 mmol) was dissolved in a solution of 6-C1 HOBt (0.165 g, 0.975 mmol) and DIC (152 pL, 0.975 mmol) in DMF, and was then added to the beads. The coupling was carried out at room temperature for 2 hours.After filtration, the beads were washed with DMF (3x10 mL), MeOH (3x10 mL), and DMF (3x10 mL), respectively. The Fmoc deprotection group was removed with 20% 4- methylpiperidine twice (5 and 15 minutes, respectively). After washing with DMF, MeOH, and DMF respectively, the beads were then subjected to additional coupling and deprotection cycles stepwise with Fmoc-Aad(0/Bu)-OH, Fmoc-Lys(Al2) and UPA in the same manner as described above.The Dde protecting group was removed with 2% hydrazine monohydrate in DMF twice (5 and 10 minutes, respectively) and the beads were again washed with DMF, MeOH and DMF, followed by coupling of Boc-D-Cys(Trt)-OH (4 eq. to resin, 220 mg, 1.3 mmol), HOBt (0T76g, 1.3 mmol), and DIC (201 pL, 1.3 mmol) in DMF (8 mL). The coupling reaction was conducted at room temperature until Kaiser test negative (4 hours to overnight). The beads were thoroughly washed with DMF, MeOH and DCM, respectively, and then dried under vacuum for 1 hour before adding a cleavage mixture (8 mL) of 82.5%trifluoroacetic acid (TFA): 5% thioanisole: 5% phenol:5% water: 2.5% triisopropylsilane (TIS) (v/v). The cleavage reaction was conducted at room temperature over 2-3 hours. The off-white crude product was precipitated out and washed with cold diethyl ether. The purity was determined by analytical HPLC and the crude product was used in the next step without further purification. |
[ 196808-79-4 ]
(R)-2-((((9H-Fluoren-9-yl)methoxy)carbonyl)amino)-3-(2-methyl-1H-indol-3-yl)propanoic acid
Similarity: 0.86
Precautionary Statements-General | |
Code | Phrase |
P101 | If medical advice is needed,have product container or label at hand. |
P102 | Keep out of reach of children. |
P103 | Read label before use |
Prevention | |
Code | Phrase |
P201 | Obtain special instructions before use. |
P202 | Do not handle until all safety precautions have been read and understood. |
P210 | Keep away from heat/sparks/open flames/hot surfaces. - No smoking. |
P211 | Do not spray on an open flame or other ignition source. |
P220 | Keep/Store away from clothing/combustible materials. |
P221 | Take any precaution to avoid mixing with combustibles |
P222 | Do not allow contact with air. |
P223 | Keep away from any possible contact with water, because of violent reaction and possible flash fire. |
P230 | Keep wetted |
P231 | Handle under inert gas. |
P232 | Protect from moisture. |
P233 | Keep container tightly closed. |
P234 | Keep only in original container. |
P235 | Keep cool |
P240 | Ground/bond container and receiving equipment. |
P241 | Use explosion-proof electrical/ventilating/lighting/equipment. |
P242 | Use only non-sparking tools. |
P243 | Take precautionary measures against static discharge. |
P244 | Keep reduction valves free from grease and oil. |
P250 | Do not subject to grinding/shock/friction. |
P251 | Pressurized container: Do not pierce or burn, even after use. |
P260 | Do not breathe dust/fume/gas/mist/vapours/spray. |
P261 | Avoid breathing dust/fume/gas/mist/vapours/spray. |
P262 | Do not get in eyes, on skin, or on clothing. |
P263 | Avoid contact during pregnancy/while nursing. |
P264 | Wash hands thoroughly after handling. |
P265 | Wash skin thouroughly after handling. |
P270 | Do not eat, drink or smoke when using this product. |
P271 | Use only outdoors or in a well-ventilated area. |
P272 | Contaminated work clothing should not be allowed out of the workplace. |
P273 | Avoid release to the environment. |
P280 | Wear protective gloves/protective clothing/eye protection/face protection. |
P281 | Use personal protective equipment as required. |
P282 | Wear cold insulating gloves/face shield/eye protection. |
P283 | Wear fire/flame resistant/retardant clothing. |
P284 | Wear respiratory protection. |
P285 | In case of inadequate ventilation wear respiratory protection. |
P231 + P232 | Handle under inert gas. Protect from moisture. |
P235 + P410 | Keep cool. Protect from sunlight. |
Response | |
Code | Phrase |
P301 | IF SWALLOWED: |
P304 | IF INHALED: |
P305 | IF IN EYES: |
P306 | IF ON CLOTHING: |
P307 | IF exposed: |
P308 | IF exposed or concerned: |
P309 | IF exposed or if you feel unwell: |
P310 | Immediately call a POISON CENTER or doctor/physician. |
P311 | Call a POISON CENTER or doctor/physician. |
P312 | Call a POISON CENTER or doctor/physician if you feel unwell. |
P313 | Get medical advice/attention. |
P314 | Get medical advice/attention if you feel unwell. |
P315 | Get immediate medical advice/attention. |
P320 | |
P302 + P352 | IF ON SKIN: wash with plenty of soap and water. |
P321 | |
P322 | |
P330 | Rinse mouth. |
P331 | Do NOT induce vomiting. |
P332 | IF SKIN irritation occurs: |
P333 | If skin irritation or rash occurs: |
P334 | Immerse in cool water/wrap n wet bandages. |
P335 | Brush off loose particles from skin. |
P336 | Thaw frosted parts with lukewarm water. Do not rub affected area. |
P337 | If eye irritation persists: |
P338 | Remove contact lenses, if present and easy to do. Continue rinsing. |
P340 | Remove victim to fresh air and keep at rest in a position comfortable for breathing. |
P341 | If breathing is difficult, remove victim to fresh air and keep at rest in a position comfortable for breathing. |
P342 | If experiencing respiratory symptoms: |
P350 | Gently wash with plenty of soap and water. |
P351 | Rinse cautiously with water for several minutes. |
P352 | Wash with plenty of soap and water. |
P353 | Rinse skin with water/shower. |
P360 | Rinse immediately contaminated clothing and skin with plenty of water before removing clothes. |
P361 | Remove/Take off immediately all contaminated clothing. |
P362 | Take off contaminated clothing and wash before reuse. |
P363 | Wash contaminated clothing before reuse. |
P370 | In case of fire: |
P371 | In case of major fire and large quantities: |
P372 | Explosion risk in case of fire. |
P373 | DO NOT fight fire when fire reaches explosives. |
P374 | Fight fire with normal precautions from a reasonable distance. |
P376 | Stop leak if safe to do so. Oxidising gases (section 2.4) 1 |
P377 | Leaking gas fire: Do not extinguish, unless leak can be stopped safely. |
P378 | |
P380 | Evacuate area. |
P381 | Eliminate all ignition sources if safe to do so. |
P390 | Absorb spillage to prevent material damage. |
P391 | Collect spillage. Hazardous to the aquatic environment |
P301 + P310 | IF SWALLOWED: Immediately call a POISON CENTER or doctor/physician. |
P301 + P312 | IF SWALLOWED: call a POISON CENTER or doctor/physician IF you feel unwell. |
P301 + P330 + P331 | IF SWALLOWED: Rinse mouth. Do NOT induce vomiting. |
P302 + P334 | IF ON SKIN: Immerse in cool water/wrap in wet bandages. |
P302 + P350 | IF ON SKIN: Gently wash with plenty of soap and water. |
P303 + P361 + P353 | IF ON SKIN (or hair): Remove/Take off Immediately all contaminated clothing. Rinse SKIN with water/shower. |
P304 + P312 | IF INHALED: Call a POISON CENTER or doctor/physician if you feel unwell. |
P304 + P340 | IF INHALED: Remove victim to fresh air and Keep at rest in a position comfortable for breathing. |
P304 + P341 | IF INHALED: If breathing is difficult, remove victim to fresh air and keep at rest in a position comfortable for breathing. |
P305 + P351 + P338 | IF IN EYES: Rinse cautiously with water for several minutes. Remove contact lenses, if present and easy to do. Continue rinsing. |
P306 + P360 | IF ON CLOTHING: Rinse Immediately contaminated CLOTHING and SKIN with plenty of water before removing clothes. |
P307 + P311 | IF exposed: call a POISON CENTER or doctor/physician. |
P308 + P313 | IF exposed or concerned: Get medical advice/attention. |
P309 + P311 | IF exposed or if you feel unwell: call a POISON CENTER or doctor/physician. |
P332 + P313 | IF SKIN irritation occurs: Get medical advice/attention. |
P333 + P313 | IF SKIN irritation or rash occurs: Get medical advice/attention. |
P335 + P334 | Brush off loose particles from skin. Immerse in cool water/wrap in wet bandages. |
P337 + P313 | IF eye irritation persists: Get medical advice/attention. |
P342 + P311 | IF experiencing respiratory symptoms: call a POISON CENTER or doctor/physician. |
P370 + P376 | In case of fire: Stop leak if safe to Do so. |
P370 + P378 | In case of fire: |
P370 + P380 | In case of fire: Evacuate area. |
P370 + P380 + P375 | In case of fire: Evacuate area. Fight fire remotely due to the risk of explosion. |
P371 + P380 + P375 | In case of major fire and large quantities: Evacuate area. Fight fire remotely due to the risk of explosion. |
Storage | |
Code | Phrase |
P401 | |
P402 | Store in a dry place. |
P403 | Store in a well-ventilated place. |
P404 | Store in a closed container. |
P405 | Store locked up. |
P406 | Store in corrosive resistant/ container with a resistant inner liner. |
P407 | Maintain air gap between stacks/pallets. |
P410 | Protect from sunlight. |
P411 | |
P412 | Do not expose to temperatures exceeding 50 oC/ 122 oF. |
P413 | |
P420 | Store away from other materials. |
P422 | |
P402 + P404 | Store in a dry place. Store in a closed container. |
P403 + P233 | Store in a well-ventilated place. Keep container tightly closed. |
P403 + P235 | Store in a well-ventilated place. Keep cool. |
P410 + P403 | Protect from sunlight. Store in a well-ventilated place. |
P410 + P412 | Protect from sunlight. Do not expose to temperatures exceeding 50 oC/122oF. |
P411 + P235 | Keep cool. |
Disposal | |
Code | Phrase |
P501 | Dispose of contents/container to ... |
P502 | Refer to manufacturer/supplier for information on recovery/recycling |
Physical hazards | |
Code | Phrase |
H200 | Unstable explosive |
H201 | Explosive; mass explosion hazard |
H202 | Explosive; severe projection hazard |
H203 | Explosive; fire, blast or projection hazard |
H204 | Fire or projection hazard |
H205 | May mass explode in fire |
H220 | Extremely flammable gas |
H221 | Flammable gas |
H222 | Extremely flammable aerosol |
H223 | Flammable aerosol |
H224 | Extremely flammable liquid and vapour |
H225 | Highly flammable liquid and vapour |
H226 | Flammable liquid and vapour |
H227 | Combustible liquid |
H228 | Flammable solid |
H229 | Pressurized container: may burst if heated |
H230 | May react explosively even in the absence of air |
H231 | May react explosively even in the absence of air at elevated pressure and/or temperature |
H240 | Heating may cause an explosion |
H241 | Heating may cause a fire or explosion |
H242 | Heating may cause a fire |
H250 | Catches fire spontaneously if exposed to air |
H251 | Self-heating; may catch fire |
H252 | Self-heating in large quantities; may catch fire |
H260 | In contact with water releases flammable gases which may ignite spontaneously |
H261 | In contact with water releases flammable gas |
H270 | May cause or intensify fire; oxidizer |
H271 | May cause fire or explosion; strong oxidizer |
H272 | May intensify fire; oxidizer |
H280 | Contains gas under pressure; may explode if heated |
H281 | Contains refrigerated gas; may cause cryogenic burns or injury |
H290 | May be corrosive to metals |
Health hazards | |
Code | Phrase |
H300 | Fatal if swallowed |
H301 | Toxic if swallowed |
H302 | Harmful if swallowed |
H303 | May be harmful if swallowed |
H304 | May be fatal if swallowed and enters airways |
H305 | May be harmful if swallowed and enters airways |
H310 | Fatal in contact with skin |
H311 | Toxic in contact with skin |
H312 | Harmful in contact with skin |
H313 | May be harmful in contact with skin |
H314 | Causes severe skin burns and eye damage |
H315 | Causes skin irritation |
H316 | Causes mild skin irritation |
H317 | May cause an allergic skin reaction |
H318 | Causes serious eye damage |
H319 | Causes serious eye irritation |
H320 | Causes eye irritation |
H330 | Fatal if inhaled |
H331 | Toxic if inhaled |
H332 | Harmful if inhaled |
H333 | May be harmful if inhaled |
H334 | May cause allergy or asthma symptoms or breathing difficulties if inhaled |
H335 | May cause respiratory irritation |
H336 | May cause drowsiness or dizziness |
H340 | May cause genetic defects |
H341 | Suspected of causing genetic defects |
H350 | May cause cancer |
H351 | Suspected of causing cancer |
H360 | May damage fertility or the unborn child |
H361 | Suspected of damaging fertility or the unborn child |
H361d | Suspected of damaging the unborn child |
H362 | May cause harm to breast-fed children |
H370 | Causes damage to organs |
H371 | May cause damage to organs |
H372 | Causes damage to organs through prolonged or repeated exposure |
H373 | May cause damage to organs through prolonged or repeated exposure |
Environmental hazards | |
Code | Phrase |
H400 | Very toxic to aquatic life |
H401 | Toxic to aquatic life |
H402 | Harmful to aquatic life |
H410 | Very toxic to aquatic life with long-lasting effects |
H411 | Toxic to aquatic life with long-lasting effects |
H412 | Harmful to aquatic life with long-lasting effects |
H413 | May cause long-lasting harmful effects to aquatic life |
H420 | Harms public health and the environment by destroying ozone in the upper atmosphere |
Sorry,this product has been discontinued.
Home
* Country/Region
* Quantity Required :
* Cat. No.:
* CAS No :
* Product Name :
* Additional Information :