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CAS No. : | 77284-32-3 | MDL No. : | MFCD00037537 |
Formula : | C21H23NO4 | Boiling Point : | - |
Linear Structure Formula : | - | InChI Key : | VCFCFPNRQDANPN-IBGZPJMESA-N |
M.W : | 353.41 | Pubchem ID : | 7009636 |
Synonyms : |
Fmoc-L-Norleucine
|
Num. heavy atoms : | 26 |
Num. arom. heavy atoms : | 12 |
Fraction Csp3 : | 0.33 |
Num. rotatable bonds : | 9 |
Num. H-bond acceptors : | 4.0 |
Num. H-bond donors : | 2.0 |
Molar Refractivity : | 99.59 |
TPSA : | 75.63 Ų |
GI absorption : | High |
BBB permeant : | Yes |
P-gp substrate : | No |
CYP1A2 inhibitor : | Yes |
CYP2C19 inhibitor : | Yes |
CYP2C9 inhibitor : | Yes |
CYP2D6 inhibitor : | No |
CYP3A4 inhibitor : | Yes |
Log Kp (skin permeation) : | -5.28 cm/s |
Log Po/w (iLOGP) : | 2.35 |
Log Po/w (XLOGP3) : | 4.48 |
Log Po/w (WLOGP) : | 4.17 |
Log Po/w (MLOGP) : | 3.0 |
Log Po/w (SILICOS-IT) : | 3.72 |
Consensus Log Po/w : | 3.54 |
Lipinski : | 0.0 |
Ghose : | None |
Veber : | 0.0 |
Egan : | 0.0 |
Muegge : | 0.0 |
Bioavailability Score : | 0.56 |
Log S (ESOL) : | -4.6 |
Solubility : | 0.00886 mg/ml ; 0.0000251 mol/l |
Class : | Moderately soluble |
Log S (Ali) : | -5.79 |
Solubility : | 0.000575 mg/ml ; 0.00000163 mol/l |
Class : | Moderately soluble |
Log S (SILICOS-IT) : | -6.08 |
Solubility : | 0.000292 mg/ml ; 0.000000826 mol/l |
Class : | Poorly soluble |
PAINS : | 0.0 alert |
Brenk : | 0.0 alert |
Leadlikeness : | 3.0 |
Synthetic accessibility : | 3.86 |
Signal Word: | Warning | Class: | N/A |
Precautionary Statements: | P261-P305+P351+P338 | UN#: | N/A |
Hazard Statements: | H315-H319-H335 | Packing Group: | N/A |
GHS Pictogram: |
* All experimental methods are cited from the reference, please refer to the original source for details. We do not guarantee the accuracy of the content in the reference.
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
105 mg | With hydrogen In methanol at 20℃; | In a dry box under N2 atmosphere, a Schlenk vessel equipped with a magnetic stir bar was charged with V-Fmoc allylglycine (100 mg, 0.296 mmol), degassed DCM (6.0 mL), terminal alkene (1.48 mmol, 5 eq.) and HGII (9.29 mg, 5 molpercent). The vessel was sealed, removed from the dry box and attached to a vacuum manifold. The vessel was placed under a flow of nitrogen and the quick fit stopper replaced with a suba seal pierced with a 26 gauge needle to allow a constant flow of nitrogen over the top of the reaction. The reaction was stirred at room temperature overnight allowing all of the DCM to evaporate. The residue was washed with hexane (2 x 10 mL) and collected via filtration or centrifuge. The residue was then re-dissolved in MeOH (10 mL) and transferred to a Fischer-Porter tube. The vessel was charged with H2 (60 p.s.i.), sealed and stirred at room temperature overnight. The reaction mixture was then concentrated in vacuo and the residual brown solid was purified via column chromatography to obtain pure -Fmoc amino acid analogue. Alternatively, the residual brown solid was taken up in a small quantity of Et20. Insoluble matter was removed by filtration. The filtrate was concentrated in vacuo to give an off white solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: The substrate attached to the resin (mmol calculated from the substrate loading procedure) was weighted into a 2 mL syringe fitted with porous polyethylene filter. The Fmoc group was removed (if necessary) by treatment with 20% piperidine in DMF (2 × 1.5 mL, 10 + 15 min) and the resin was washed with DMF (4 × 1.5 mL, 4 × 1 min). Coupling of the appropriate (Fmoc protected) amino acid was performed by agitation overnight in DMF (2 mL), (benzotriazol-1-yloxy)tripyrrolidinophosphonium hexafluorophosphate (PyBOP) (2 equiv) and DIPEA (6 equiv). The resin was washed with DMF (4 × 1.5 mL, 4 × 1 min) and subsequently Fmoc-deprotected and washed as described above. Finally, after three or four coupling procedures, the tetrazole derivative (9) was attached as described in the General procedure for attaching the tetrazole carboxylate. After completion of the coupling cycles, the resin was washed with several portions of DMF, CH2Cl2, and finally MeOH before it was dried in vacuo. The peptide was cleaved of the resin by treatment with TFA (95% aq, 2.5 mL) and Et3SiH (100 muL) for 2 h in a capped tube. The resin was filtered off and washed with TFA (3 × 0.5 mL). The filtrate was collected in a centrifuge tube and concentrated in a stream of N2 (g). Cold diethyl ether (12 mL) was used to precipitate the product as a TFA-salt, which was collected by centrifugation, washed with cold diethyl ether (2 × 3 mL) and dried. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
(1) Synthesis of Protected Peptide Resin (0201) Using the automated peptide synthesizer (Model 433A, Applied Biosystems, Inc.), the peptide was synthesized by a method which involves binding amino acids one by one from the carboxyl terminal sides according to the attached software (a solid-phase synthesis method). A protected peptide resin was synthesized. Using Fmoc-SAL resin (0.65 mol/g, 0.32 mmol scal) as the starting resin carrier, a peptide chain was successively extended according to the sequence, using, as raw materials, Fmoc-amino acid derivatives employed in a common Fmoc-peptide synthesis method. An Fmoc-amino acid derivative was set in the reaction vessel of the peptide synthesizer, and a solution of 1-[bisdimethylaminomethylene]-1H-benzotriazolium-3-oxido-hexafluorophosphate (HBTu) and 1-hydroxybenzotriazole (HOBt) as activators in dimethylformamide (DMF) was added to the reactor for reaction according to the software included with the synthesizer. The resulting resin was slowly stirred in piperidine-containing N-methylpyrrolidone to remove the Fmoc group, and the subsequent condensation of the amino acid derivative was conducted. (0202) Tyr (OBu), Lys (Boc) and Lys (p-methyltrityl(hereinafter Mtt)) were used as the amino acids each having a functional group in the side chain constituting the Fmoc amino acid derivatives used. Amino acids were successively added according to the sequence to provide a protected peptide resin of H-Leu-Phe-Nle-Tyr(OBu)-DLys(Mtt)-DLys(Boc)-SAL resin. Thereafter, formyl-Nle was condensed using DIC-HOOBt to construct a protected peptide resin having the sequence of interest. Consequently, Mtt group is selectively deleted using TFA-TIS-DCM (1/5/94, v/v), followed Fmoc group is condensed into the amide group in the side chain of Lys using Fmoc-OSu to provide a protected peptide resin having the sequence of formyl-Nle-Leu-Phe7Nle-Tyr(OBu)-DLys (Fmoc)-DLys(BOC)-SAL Resin. (0203) (2) Deprotection and Cutting Out from Resin (0204) The resulting protected peptide resin was treated at room temperature for 2 hours under TFA-TIS-H2O-(95/2.5/2.5, v/v) deprotection conditions for an ordinary method using trifluoroacetic acid to perform deprotection and cutting out of the peptide from the resin simultaneously. The carrier resin was filtered off from the reaction solution, followed by distilling off TFA. Ether was added to the residue, and the precipitate of the resulting crude product peptide was collected by filtration. (0205) (3) Isolation and Purification of Peptide (0206) The resulting crude product peptide was dissolved in acetonitrile and separated and purified in a water-acetonitrile system containing 0.1% trifluoroacetic acid using the HPLC separation device LC-8A-1 (column: ODS 30×250 mm), manufactured by Shimadzu Corporation, to provide a peptide fraction of interest; acetonitrile was distilled off before making a lyophilized powder to provide the product of interest in the form of its trifluoroacetate. (0207) To verify that the resulting peptide is the one of interest, EMI-MS and HPLC analyses were performed. (0208) HPLC analysis conditions: HPLC analysis conditions: (0209) Column: YMC A-302 (ODS, 150×4.6 mm I.D.) (0210) Column Temperature: 40 C. (0211) Eluants: Solution A: Water/0.1% TFA, Solution B: MeCN/0.1% TFA (0212) Gradient: A/B: 70/30?20/80, 0?25 min linear (0213) Flow Rate: 1.0 mL/min (0214) Detector: 220 nm (0215) Amount Injected: 1 muL (0216) Sample Solution: 1 mg/200 muL 25% MeCN/H2O (0217) Analysis Results: Analysis Results: (0218) Retention Time: 17.0 min, Purity: 98.4% (0219) m/z 1173.9 ([M+H]+ 1174.4), m/z 587.6 ([M+2H]2+ 587.7) (0220) Molecular Weight: 1173.4 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
(1) Synthesis of Protected Peptide Resin (0245) Using the automated peptide synthesizer (Model 433A, Applied Biosystems, Inc.), the peptide was synthesized by a method which involves binding amino acids one by one from the carboxyl terminal sides according to the included software (a solid-phase synthesis method). A protected peptide resin was synthesized. Using Fmoc-SAL resin (0.65 mol/g, 0.32 mmol scal) as the starting resin carrier, a peptide chain was successively extended according to the sequence, using, as raw materials, Fmoc-amino acid derivatives employed in a common Fmoc-peptide synthesis method. An Fmoc-amino acid derivative was set in the reaction vessel of the peptide synthesizer, and a solution of 1-[bisdimethylaminomethylene]-1H-benzotriazolium-3-oxido-hexafluorophosphate (HBTu) and 1-hydroxybenzotriazole (HOBt) as activators in dimethylformamide (DMF) was added to the reactor for reaction according to the software included with the synthesizer. The resulting resin was slowly stirred in piperidine-containing N-methylpyrrolidone to remove the Fmoc group, and the subsequent condensation of the amino acid derivative was conducted. (0246) As the amino acids each having a functional group in the side chain constituting the Fmoc amino acid derivatives used, Tyr (OBu), Lys (Boc) and Lys (Mtt) were used. Amino acids were successively added according to the sequence to provide a protected peptide resin of H-Leu-Phe-Nle-Tyr(OBu)-DLys(Boc)-DLys(Mtt)-SAL resin. Thereafter, formyl-Met was condensed using DIC-HOOBt to construct a protected peptide resin having the sequence of interest. Consequently, Mtt group is selectively deleted using TFA-TIS-DCM (1/5/94, v/v), followed Fmoc group is condensed into the amide group in the side chain of Lys using Fmoc-OSu to provide a protected peptide resin having the sequence of formyl-Met-Leu-Phe-Nle-Tyr(OBu)-DLys(Boc)-DLys(Fmoc)-SAL Resin. (0247) (2) Deprotection and Cutting Out from Resin (0248) The resulting protected peptide resin was treated at room temperature for 2 hours under TFA-TIS-H2O-(95/2.5/2.5, v/v) deprotection conditions for an ordinary method using trifluoroacetic acid to perform deprotection and cutting out of the peptide from the resin simultaneously. The carrier resin was filtered off from the reaction solution, followed by distilling off TFA. Ether was added to the residue, and the precipitate of the resulting crude product peptide was collected by filtration. (0249) (3) Isolation and Purification of Peptide (0250) The resulting crude product peptide was dissolved in acetonitrile and separated and purified in a water-acetonitrile system containing 0.1% trifluoroacetic acid using the HPLC separation device LC-8A-1 (column: ODS 30×250 mm), manufactured by Shimadzu Corporation, to provide a peptide fraction of interest; acetonitrile was distilled off before making a lyophilized powder to provide the product of interest in the form of its trifluoroacetate. (0251) To verify that the resulting peptide is the one of interest, EMI-MS and HPLC analyses were performed. (0252) HPLC analysis conditions: (0253) Column: YMC A-302 (ODS, 150×4.6 mm I.D.) (0254) Column Temperature: 40 C. (0255) Eluants: Solution A: Water/0.1% TFA, Solution B: MeCN/0.1% TFA (0256) Gradient: A/B: 70/30?20/80, 0?25 min linear (0257) Flow Rate: 1.0 mL/min (0258) Detector: 220 nm (0259) Amount Injected: 1 muL (0260) Sample Solution: 1 mg/200 muL 25% MeCN/H2O (0261) Analysis Results: (0262) Retention Time: 15.6 min, Purity: 96.7% (0263) m/z 1191.9 ([M+H]+ 1192.5), m/z 596.7 ([M+2H]2+ 596.7) (0264) Molecular Weight: 1191.5 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
(1) Synthesis of Protected Peptide Resin (0287) Using the automated peptide synthesizer (Model 433A, Applied Biosystems, Inc.), the peptide was synthesized by a method which involves binding amino acids one by one from the carboxyl terminal sides according to the included software (a solid-phase synthesis method). A protected peptide resin was synthesized. Using Fmoc-SAL resin (0.65 mol/g, 0.32 mmol scal) as the starting resin carrier, a peptide chain was successively extended according to the sequence, using, as raw materials, Fmoc-amino acid derivatives employed in a common Fmoc-peptide synthesis method. An Fmoc-amino acid derivative was set in the reaction vessel of the peptide synthesizer, and a solution of 1-[bisdimethylaminomethylene]-1H-benzotriazolium-3-oxido-hexafluorophosphate (HBTu) and 1-hydroxybenzotriazole (HOBt) as activators in dimethylformamide (DMF) was added to the reactor for reaction according to the software included with the synthesizer. The resulting resin was slowly stirred in piperidine-containing N-methylpyrrolidone to remove the Fmoc group, and the subsequent condensation of the amino acid derivative was conducted. (0288) As the amino acids each having a functional group in the side chain constituting the Fmoc amino acid derivatives used, Tyr (OBu), Lys (Boc) and Lys (Mtt) were used. Amino acids were successively added according to the sequence to provide a protected peptide resin of H-Leu-Phe-Nle-Tyr(OBu)-DLys(Mtt)-DLys(Boc)-SAL resin. Thereafter, formyl-Met was condensed using DIC-HOOBt to construct a protected peptide resin having the sequence of interest. Consequently, Mtt group is selectively deleted using TFA-TIS-DCM (1/5/94, v/v), followed Fmoc group is condensed into the amide group in the side chain of Lys using Fmoc-OSu to provide a protected peptide resin having the sequence of formyl-Met-Leu-Phe-Nle-Tyr(OBu)-DLys(Fmoc)-DLys(BOC)-SAL Resin. (0289) (2) Deprotection and Cutting Out from Resin (0290) The resulting protected peptide resin was treated at room temperature for 2 hours under TFA-TIS-H2O-(95/2.5/2.5, v/v) deprotection conditions for an ordinary method using trifluoroacetic acid to perform deprotection and cutting out of the peptide from the resin simultaneously. The carrier resin was filtered off from the reaction solution, followed by distilling off TFA. Ether was added to the residue, and the precipitate of the resulting crude product peptide was collected by filtration. (0291) (3) Isolation and Purification of Peptide (0292) The resulting crude product peptide was dissolved in acetonitrile and separated and purified in a water-acetonitrile system containing 0.1% trifluoroacetic acid using the HPLC separation device LC-8A-1 (column: ODS 30×250 mm), manufactured by Shimadzu Corporation, to provide a peptide fraction of interest; acetonitrile was distilled off before making a lyophilized powder to provide the product of interest in the form of its trifluoroacetate. (0293) To verify that the resulting peptide is the one of interest, EMI-MS and HPLC analyses were performed. (0294) HPLC analysis conditions: HPLC analysis conditions: (0295) Column: YMC ODS-A (ODS, 150×4.6 mm I.D.) (0296) Column Temperature: 40 C. (0297) Eluants: Solution A: Water/0.1% TFA, Solution B: MeCN/0.1% TFA (0298) Gradient: A/B: 70/30?20/80, 0?25 min linear (0299) Flow Rate: 1.0 mL/min (0300) Detector: 220 nm (0301) Amount Injected: 1 muL (0302) Sample Solution: 1 mg/200 muL 50% MeCN/H2O (0303) Analysis Results: Analysis Results: (0304) Retention Time: 15.5 min, Purity: 98.0% (0305) m/z 1191.9 ([M+H]+ 1192.5), m/z 597.0 ([M+2H]2+ 596.7) (0306) Molecular Weight: 1191.5 |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: Example 190 is shown in Table 1. Procedure P, as described above, was used for the preparation of the peptide. The peptide was synthesized starting with the amino acid Fmoc-Thr-allyl ester, which was grafted to the resin (Fmoc-Thr(-2-chlorotrityl resin)-allyl). The peptide was synthesized on the solid support according to method K, as described above, including macrolactam cycle formation (module B) and using Fmoc-Asp(2-PhiPr)-OH for addition of the amino acid residue at P11. Following coupling of the Fmoc amino acid building block at position Q1, macrolactam cycle formation (module B) by an amide bond between the a-carboxyl group of Thr at Q7 and the gamma-amino group of Dab at Q1 was performed as described in the corresponding section of procedure G. Assembly of the peptide was in the following sequence: Subsequently, removal of the alloc protecting group at P2, cleavage of the peptide from the resin and removal of the 2-phenyl-isopropyl protecting group at P11, formation of a lactam interstrand linkage by an amide bond between the liberated beta- carboxyl group of Asp at P11 and the gamma-amino group of Dab at P2, and full deprotection were performed as indicated in procedure P above. Finally, the peptide was purified, as described above, and characterized by HPLC-MS. For analytical data, see Ex. 190 in Table 2. 1.1.1.2 Coupling to the resin via a side chain hydroxy group In a dried flask, 2-chlorotritylchloride resin (polystyrene, 1% crosslinked; loading: 1.4 mMol/g) was swollen in dry 1,2 dichloroethane for 30 min (4.5 mL 1,2 dichloroethane per g resin). A suspension of 3.2 eq of the Fmoc-protected amino acid ester and 2 eq of NMM in dry 1,2-dichloroethane (10 mL per g resin) was added. After stirring under reflux for 1-2 h the resin was filtered off and washed with 1,2 dichloroethane (3x) and with CH2CI2. Then a solution of dry CH2CI2/MeOH/DIPEA (17:2:1, v/v/v) was added (10 mL per g resin). After shaking for 3 x 30 min the resin was filtered off in a pre-weighed sinter funnel and washed successively with CH2CI2, DMF, CH2CI2, MeOH, CH2CI2, MeOH, CH2CI2 (2x) and Et20 (2x). The resin was dried under high vacuum overnight. The final mass of resin was calculated before the qualitative control. Loading was typically 0.2 - 0.3 mMol/g. The following preloaded resin was prepared: Fmoc-Thr(-2-chlorotrityl resin)-allyl. 1.1.2 Methods for synthesis on solid support of the fully protected peptide fragment and of fully protected peptide fragments for fragment coupling The synthesis was carried out on a Syro-peptide synthesizer (MultiSynTech GmbH) using 24 to 96 reaction vessels. Unless otherwise indicated, in each vessel were placed 0.05 mMol of the resin, obtained from procedure 1.1.1.1 as described above, and the resin was swelled in CH2CI2 and DMF for 15 min, respectively. The following reaction cycles were programmed and carried out as described in the methods A - L, as described herein below: Step Reagent Time 1 CH2CI2, wash and swell (manual) 1 x 3 min 2 DMF, wash and swell 2 x 30 min 3 20% piperidine/DMF 1 x 5 min and 1 x 15 min 4 DMF, wash 5 x 1 min 5 a) 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq DIC in DMF 1 x 40 min 6 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq HATU + 7.2 eq DIPEA in NMP l x 40 min 7 DMF, wash 5 x 1 min 8 20% piperidine/DMF 1 x 5 min and 1 x 15 min or 2 x 2 min b) 9 DMF, wash 5 x 1 min 10 CH2CI2, wash (at the end of the synthesis) 3 x 1 min a) In the coupling cycle following coupling of an N-alkyl amino acid residue and for coupling of the first protected amino acid residue to Sieber amide resin, step 5 was omitted and step 6 was performed twice instead, b) Reduced times were used for Fmoc deprotection of an amino acid residue having a carboxyl group protected as allyl ester, and for the Fmoc deprotection step of the following coupling cycle. 1.1.2.11 Method K The reaction cycles, as described herein above, were applied for the assembly of the fully protected peptide fragment, using 0.05 mMol of the resin obtained from procedure 1.1.1.2 and appropriately protected Fmoc amino acid building blocks, except for the last coupling. For the latter an appropriately protected Boc amino acid building block was used. In a first part, a fully protected peptide fragment encompassing amino acid residues of module B was prepared. Steps 5 to 9 are repeated to add each amino acid residue, except for the last amino acid residue of this peptide fragment, which was added by steps 5 to 7. Subsequently, macrolactam cycle formation (module B) was performed as described in the corresponding section of procedure G herein below, followed by steps 8 to 9 for Fmoc deprotection and washing. Assembly of the fully protected peptide fragment was then completed. Steps 5 to 9 were repeated to add each remaining amino acid residue, except for the last amino acid residue, which was added by steps 5 to 7, followed by step 10.1.1.3.... |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: Example 14 is shown in Table 1. Procedure El, as described above, was used for the preparation of the peptide. The peptide was synthesized starting with the amino acid Fmoc-Thr(tBu)-OH, which was grafted to the resin (Fmoc-Thr(tBu)-2-chlorotrityl resin). The linear peptide was synthesized on the solid support according to method A, as described above, in the following sequence: Subsequently, acetylation at P1, formation of the lactam interstrand linkage by an amide bond between the side-chain functional groups of Glu at P2 and Dab at P11, ivDde deprotection at Q1, cleavage of the peptide from the resin, macrolactam cycle formation (module B) by an amide bond between the a-carboxyl group of Thr at Q7 and the gamma-amino group of Dab at Q1, and full deprotection were performed as indicated in procedure El above. Finally, the peptide was purified, as described above, and characterized by HPLC-MS. For analytical data, see Ex. 14 in Table 2. 1.1.1.1 Coupling to the resin via a carboxyl group In a dried flask, 2-chlorotritylchloride resin (polystyrene, 1% crosslinked; loading: 1.4 mMol/g) was swollen in dry CH2CI2 for 30 min (7 mL CH2CI2 per g resin). A solution of 0.8 eq of the Fmoc-protected amino acid and 6 eq of DIPEA in dry CH2CI2/DMF (4/1, v/v) (10 mL per g resin) was added. After shaking for 2-4 h at rt the resin was filtered off and washed successively with CH2CI2, DMF, CH2CI2, DMF and CH2CI2. Then a solution of dry CH2CI2/MeOH/DIPEA (17:2:1, v/v/v) was added (10 mL per g resin). After shaking for 3 x 30 min the resin was filtered off in a pre-weighed sinter funnel and washed successively with CH2CI2, DMF, CH2CI2, MeOH, CH2CI2, MeOH, CH2CI2 (2x) and Et20 (2x). The resin was dried under high vacuum overnight. The final mass of resin was calculated before the qualitative control. Loading was typically 0.6 - 0.7 mMol/g. The following preloaded resins were prepared: Fmoc-Thr(tBu)-2-chlorotrityl resin, Fmoc-DThr(tBu)-2-chlorotrityl resin, Fmoc-Val-2-chlorotrityl resin, Fmoc-DVal-2- chlorotrityl resin, Fmoc-Arg(Pbf)-2-chlorotrityl resin and Fmoc-DArg(Pbf)-2-chlorotrityl resin. 1.1.2 Methods for synthesis on solid support of the fully protected peptide fragment and of fully protected peptide fragments for fragment coupling The synthesis was carried out on a Syro-peptide synthesizer (MultiSynTech GmbH) using 24 to 96 reaction vessels. Unless otherwise indicated, in each vessel were placed 0.05 mMol of the resin, obtained from procedure 1.1.1.1 as described above, and the resin was swelled in CH2CI2 and DMF for 15 min, respectively. The following reaction cycles were programmed and carried out as described in the methods A - L, as described herein below: Step Reagent Time 1 CH2CI2, wash and swell (manual) 1 x 3 min 2 DMF, wash and swell 2 x 30 min 3 20% piperidine/DMF 1 x 5 min and 1 x 15 min 4 DMF, wash 5 x 1 min 5 a) 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq DIC in DMF 1 x 40 min 6 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq HATU + 7.2 eq DIPEA in NMP l x 40 min 7 DMF, wash 5 x 1 min 8 20% piperidine/DMF 1 x 5 min and 1 x 15 min or 2 x 2 min b) 9 DMF, wash 5 x 1 min 10 CH2CI2, wash (at the end of the synthesis) 3 x 1 min a) In the coupling cycle following coupling of an N-alkyl amino acid residue and for coupling of the first protected amino acid residue to Sieber amide resin, step 5 was omitted and step 6 was performed twice instead, b) Reduced times were used for Fmoc deprotection of an amino acid residue having a carboxyl group protected as allyl ester, and for the Fmoc deprotection step of the following coupling cycle. 1.1.2.1 Method A The reaction cycles, as described herein above, were applied for the assembly of the fully protected peptide fragment, using appropriately protected Fmoc amino acid building blocks. Steps 5 to 9 are repeated to add each amino acid residue. 1.1.3.4 Procedure El: Preparation of a peptide having a lactam interstrand linkage in module A and being acetylated at the N-terminal amino group The linear peptide was assembled according to Method A, as described above. After acetylation, performed as described in the corresponding section of procedure C, the lactam interstrand linkage in module A was formed as follows: Formation of lactam interstrand linkage (module A) Selective removal of the allyl and alloc protecting groups from carboxyl and amino functions was performed as described in the corresponding section in procedure A for removal of the alloc protecting group. Subsequently, 2 eq FDPP in 0.5 mL DMF and 2 eq DIPEA in 0.5 mL CH2CI2 were added to the resin in CH2CI2. After stirring the reaction mixture for approximately 16 h, the resin was filtered, and fresh solutions of reagents were added to repeat the procedure. Afterwards, the resin was washed three times with DMF. Subsequent ivDde deprotection (module B), cleavage of the peptide from the resin, macrolactam cycle formation (module B... |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: Examples 58, 59, 196 and 197 are shown in Table 1. Procedure El, as described above, was used for the preparation of the peptides. The peptides were synthesized starting with the amino acid Fmoc-Thr(tBu)-OH, which was grafted to the resin (Fmoc-Thr(tBu)-2-chlorotrityl resin). The linear peptides were synthesized on the solid support according to method A, as described above, in the following sequence: Subsequently, acetylation at P14, formation of the lactam interstrand linkage by an amide bond between the side-chain functional groups of amino acid residues at P13 and P14, ivDde deprotection at Q1, cleavage of the peptide from the resin, macrolactam cycle formation (module B) by an amide bond between the alpha-carboxyl group of Thr at Q7 and the gamma-amino group of Dab at Q1, and full deprotection were performed as indicated in procedure El above. Finally, the peptides were purified, as described above, and characterized by HPLC-MS. For analytical data, see Ex. 58, 59, 196 and 197 in Table 2. 1.1.1.1 Coupling to the resin via a carboxyl group In a dried flask, 2-chlorotritylchloride resin (polystyrene, 1% crosslinked; loading: 1.4 mMol/g) was swollen in dry CH2CI2 for 30 min (7 mL CH2CI2 per g resin). A solution of 0.8 eq of the Fmoc-protected amino acid and 6 eq of DIPEA in dry CH2CI2/DMF (4/1, v/v) (10 mL per g resin) was added. After shaking for 2-4 h at rt the resin was filtered off and washed successively with CH2CI2, DMF, CH2CI2, DMF and CH2CI2. Then a solution of dry CH2CI2/MeOH/DIPEA (17:2:1, v/v/v) was added (10 mL per g resin). After shaking for 3 x 30 min the resin was filtered off in a pre-weighed sinter funnel and washed successively with CH2CI2, DMF, CH2CI2, MeOH, CH2CI2, MeOH, CH2CI2 (2x) and Et20 (2x). The resin was dried under high vacuum overnight. The final mass of resin was calculated before the qualitative control. Loading was typically 0.6 - 0.7 mMol/g. The following preloaded resins were prepared: Fmoc-Thr(tBu)-2-chlorotrityl resin, Fmoc-DThr(tBu)-2-chlorotrityl resin, Fmoc-Val-2-chlorotrityl resin, Fmoc-DVal-2- chlorotrityl resin, Fmoc-Arg(Pbf)-2-chlorotrityl resin and Fmoc-DArg(Pbf)-2-chlorotrityl resin. 1.1.2 Methods for synthesis on solid support of the fully protected peptide fragment and of fully protected peptide fragments for fragment coupling The synthesis was carried out on a Syro-peptide synthesizer (MultiSynTech GmbH) using 24 to 96 reaction vessels. Unless otherwise indicated, in each vessel were placed 0.05 mMol of the resin, obtained from procedure 1.1.1.1 as described above, and the resin was swelled in CH2CI2 and DMF for 15 min, respectively. The following reaction cycles were programmed and carried out as described in the methods A - L, as described herein below: Step Reagent Time 1 CH2CI2, wash and swell (manual) 1 x 3 min 2 DMF, wash and swell 2 x 30 min 3 20% piperidine/DMF 1 x 5 min and 1 x 15 min 4 DMF, wash 5 x 1 min 5 a) 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq DIC in DMF 1 x 40 min 6 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq HATU + 7.2 eq DIPEA in NMP l x 40 min 7 DMF, wash 5 x 1 min 8 20% piperidine/DMF 1 x 5 min and 1 x 15 min or 2 x 2 min b) 9 DMF, wash 5 x 1 min 10 CH2CI2, wash (at the end of the synthesis) 3 x 1 min a) In the coupling cycle following coupling of an N-alkyl amino acid residue and for coupling of the first protected amino acid residue to Sieber amide resin, step 5 was omitted and step 6 was performed twice instead, b) Reduced times were used for Fmoc deprotection of an amino acid residue having a carboxyl group protected as allyl ester, and for the Fmoc deprotection step of the following coupling cycle. 1.1.2.1 Method A The reaction cycles, as described herein above, were applied for the assembly of the fully protected peptide fragment, using appropriately protected Fmoc amino acid building blocks. Steps 5 to 9 are repeated to add each amino acid residue. 1.1.3.4 Procedure El: Preparation of a peptide having a lactam interstrand linkage in module A and being acetylated at the N-terminal amino group The linear peptide was assembled according to Method A, as described above. After acetylation, performed as described in the corresponding section of procedure C, the lactam interstrand linkage in module A was formed as follows: Formation of lactam interstrand linkage (module A) Selective removal of the allyl and alloc protecting groups from carboxyl and amino functions was performed as described in the corresponding section in procedure A for removal of the alloc protecting group. Subsequently, 2 eq FDPP in 0.5 mL DMF and 2 eq DIPEA in 0.5 mL CH2CI2 were added to the resin in CH2CI2. After stirring the reaction mixture for approximately 16 h, the resin was filtered, and fresh solutions of reagents were added to repeat the procedure. Afterwards, the resin was washed three times with DMF. Subsequent ivDde deprotection (module B), cleavage of the pep... |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: Examples 58, 59, 196 and 197 are shown in Table 1. Procedure El, as described above, was used for the preparation of the peptides. The peptides were synthesized starting with the amino acid Fmoc-Thr(tBu)-OH, which was grafted to the resin (Fmoc-Thr(tBu)-2-chlorotrityl resin). The linear peptides were synthesized on the solid support according to method A, as described above, in the following sequence: Subsequently, acetylation at P14, formation of the lactam interstrand linkage by an amide bond between the side-chain functional groups of amino acid residues at P13 and P14, ivDde deprotection at Q1, cleavage of the peptide from the resin, macrolactam cycle formation (module B) by an amide bond between the alpha-carboxyl group of Thr at Q7 and the gamma-amino group of Dab at Q1, and full deprotection were performed as indicated in procedure El above. Finally, the peptides were purified, as described above, and characterized by HPLC-MS. For analytical data, see Ex. 58, 59, 196 and 197 in Table 2. 1.1.1.1 Coupling to the resin via a carboxyl group In a dried flask, 2-chlorotritylchloride resin (polystyrene, 1% crosslinked; loading: 1.4 mMol/g) was swollen in dry CH2CI2 for 30 min (7 mL CH2CI2 per g resin). A solution of 0.8 eq of the Fmoc-protected amino acid and 6 eq of DIPEA in dry CH2CI2/DMF (4/1, v/v) (10 mL per g resin) was added. After shaking for 2-4 h at rt the resin was filtered off and washed successively with CH2CI2, DMF, CH2CI2, DMF and CH2CI2. Then a solution of dry CH2CI2/MeOH/DIPEA (17:2:1, v/v/v) was added (10 mL per g resin). After shaking for 3 x 30 min the resin was filtered off in a pre-weighed sinter funnel and washed successively with CH2CI2, DMF, CH2CI2, MeOH, CH2CI2, MeOH, CH2CI2 (2x) and Et20 (2x). The resin was dried under high vacuum overnight. The final mass of resin was calculated before the qualitative control. Loading was typically 0.6 - 0.7 mMol/g. The following preloaded resins were prepared: Fmoc-Thr(tBu)-2-chlorotrityl resin, Fmoc-DThr(tBu)-2-chlorotrityl resin, Fmoc-Val-2-chlorotrityl resin, Fmoc-DVal-2- chlorotrityl resin, Fmoc-Arg(Pbf)-2-chlorotrityl resin and Fmoc-DArg(Pbf)-2-chlorotrityl resin. 1.1.2 Methods for synthesis on solid support of the fully protected peptide fragment and of fully protected peptide fragments for fragment coupling The synthesis was carried out on a Syro-peptide synthesizer (MultiSynTech GmbH) using 24 to 96 reaction vessels. Unless otherwise indicated, in each vessel were placed 0.05 mMol of the resin, obtained from procedure 1.1.1.1 as described above, and the resin was swelled in CH2CI2 and DMF for 15 min, respectively. The following reaction cycles were programmed and carried out as described in the methods A - L, as described herein below: Step Reagent Time 1 CH2CI2, wash and swell (manual) 1 x 3 min 2 DMF, wash and swell 2 x 30 min 3 20% piperidine/DMF 1 x 5 min and 1 x 15 min 4 DMF, wash 5 x 1 min 5 a) 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq DIC in DMF 1 x 40 min 6 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq HATU + 7.2 eq DIPEA in NMP l x 40 min 7 DMF, wash 5 x 1 min 8 20% piperidine/DMF 1 x 5 min and 1 x 15 min or 2 x 2 min b) 9 DMF, wash 5 x 1 min 10 CH2CI2, wash (at the end of the synthesis) 3 x 1 min a) In the coupling cycle following coupling of an N-alkyl amino acid residue and for coupling of the first protected amino acid residue to Sieber amide resin, step 5 was omitted and step 6 was performed twice instead, b) Reduced times were used for Fmoc deprotection of an amino acid residue having a carboxyl group protected as allyl ester, and for the Fmoc deprotection step of the following coupling cycle. 1.1.2.1 Method A The reaction cycles, as described herein above, were applied for the assembly of the fully protected peptide fragment, using appropriately protected Fmoc amino acid building blocks. Steps 5 to 9 are repeated to add each amino acid residue. 1.1.3.4 Procedure El: Preparation of a peptide having a lactam interstrand linkage in module A and being acetylated at the N-terminal amino group The linear peptide was assembled according to Method A, as described above. After acetylation, performed as described in the corresponding section of procedure C, the lactam interstrand linkage in module A was formed as follows: Formation of lactam interstrand linkage (module A) Selective removal of the allyl and alloc protecting groups from carboxyl and amino functions was performed as described in the corresponding section in procedure A for removal of the alloc protecting group. Subsequently, 2 eq FDPP in 0.5 mL DMF and 2 eq DIPEA in 0.5 mL CH2CI2 were added to the resin in CH2CI2. After stirring the reaction mixture for approximately 16 h, the resin was filtered, and fresh solutions of reagents were added to repeat the procedure. Afterwards, the resin was washed three times with DMF. Subsequent ivDde deprotection (module B), cleavage of the pep... |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: Example 210 is shown in Table 1. Procedure Kl, as described above, was used for the preparation of the peptide. The peptide was synthesized starting with the amino acid Fmoc-Thr(tBu)-OH, which was grafted to the resin (Fmoc-Thr(tBu)-2-chlorotrityl resin). The linear peptide was synthesized on the solid support according to method B, as described above, in the following sequence: Subsequently, formation of the lactam interstrand linkage by an amide bond between the side-chain functional groups of Glu at P2 and Dab at P11, ivDde deprotection at Q1, cleavage of the peptide from the resin, macrolactam cycle formation (module B) by an amide bond between the a-carboxyl group of Thr at Q7 and the gamma-amino group of Dab at Q1, formation of the disulfide interstrand linkage between P13 and P14, and full deprotection were performed as indicated in procedure Kl above. Finally, the peptide was purified, as described above, and characterized by HPLC-MS. For analytical data, see Ex. 210 in Table 2. 1.1.1.1 Coupling to the resin via a carboxyl group In a dried flask, 2-chlorotritylchloride resin (polystyrene, 1% crosslinked; loading: 1.4 mMol/g) was swollen in dry CH2CI2 for 30 min (7 mL CH2CI2 per g resin). A solution of 0.8 eq of the Fmoc-protected amino acid and 6 eq of DIPEA in dry CH2CI2/DMF (4/1, v/v) (10 mL per g resin) was added. After shaking for 2-4 h at rt the resin was filtered off and washed successively with CH2CI2, DMF, CH2CI2, DMF and CH2CI2. Then a solution of dry CH2CI2/MeOH/DIPEA (17:2:1, v/v/v) was added (10 mL per g resin). After shaking for 3 x 30 min the resin was filtered off in a pre-weighed sinter funnel and washed successively with CH2CI2, DMF, CH2CI2, MeOH, CH2CI2, MeOH, CH2CI2 (2x) and Et20 (2x). The resin was dried under high vacuum overnight. The final mass of resin was calculated before the qualitative control. Loading was typically 0.6 - 0.7 mMol/g. The following preloaded resins were prepared: Fmoc-Thr(tBu)-2-chlorotrityl resin, Fmoc-DThr(tBu)-2-chlorotrityl resin, Fmoc-Val-2-chlorotrityl resin, Fmoc-DVal-2- chlorotrityl resin, Fmoc-Arg(Pbf)-2-chlorotrityl resin and Fmoc-DArg(Pbf)-2-chlorotrityl resin. 1.1.2 Methods for synthesis on solid support of the fully protected peptide fragment and of fully protected peptide fragments for fragment coupling The synthesis was carried out on a Syro-peptide synthesizer (MultiSynTech GmbH) using 24 to 96 reaction vessels. Unless otherwise indicated, in each vessel were placed 0.05 mMol of the resin, obtained from procedure 1.1.1.1 as described above, and the resin was swelled in CH2CI2 and DMF for 15 min, respectively. The following reaction cycles were programmed and carried out as described in the methods A - L, as described herein below: Step Reagent Time 1 CH2CI2, wash and swell (manual) 1 x 3 min 2 DMF, wash and swell 2 x 30 min 3 20% piperidine/DMF 1 x 5 min and 1 x 15 min 4 DMF, wash 5 x 1 min 5 a) 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq DIC in DMF 1 x 40 min 6 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq HATU + 7.2 eq DIPEA in NMP l x 40 min 7 DMF, wash 5 x 1 min 8 20% piperidine/DMF 1 x 5 min and 1 x 15 min or 2 x 2 min b) 9 DMF, wash 5 x 1 min 10 CH2CI2, wash (at the end of the synthesis) 3 x 1 min a) In the coupling cycle following coupling of an N-alkyl amino acid residue and for coupling of the first protected amino acid residue to Sieber amide resin, step 5 was omitted and step 6 was performed twice instead, b) Reduced times were used for Fmoc deprotection of an amino acid residue having a carboxyl group protected as allyl ester, and for the Fmoc deprotection step of the following coupling cycle. 1.1.2.2 Method B The reaction cycles, as described herein above, were applied for the assembly of the fully protected peptide fragment, using appropriately protected Fmoc amino acid building blocks, except for the last coupling. For the latter an appropriately protected Boc amino acid building block was used. Steps 5 to 9 are repeated to add each amino acid residue, except for the last amino acid residue, which was added by steps 5 to 7, followed by step 10. 1.1.3.11 Procedure Kl: Preparation of a peptide having a disulfide interstrand linkage and a lactam interstrand linkage in module A and having a free N-terminal amino group The linear peptide was assembled on solid support according to Method B, as described above. In cases where an amino acid residue is involved in the formation of a disulfide interstrand linkage, appropriately protected amino acid building blocks with a thiol group protected as trityl thioether were used in the corresponding coupling cycles. Subsequent formation of a lactam interstrand linkage (module A) was performed as described in the corresponding section of procedure El. Thereafter, ivDde deprotection (module B), cleavage of the peptide from the resin, macrolactam cycle formation (module B), formation of a disulfide inters... |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: Examples 58, 59, 196 and 197 are shown in Table 1. Procedure El, as described above, was used for the preparation of the peptides. The peptides were synthesized starting with the amino acid Fmoc-Thr(tBu)-OH, which was grafted to the resin (Fmoc-Thr(tBu)-2-chlorotrityl resin). The linear peptides were synthesized on the solid support according to method A, as described above, in the following sequence: Subsequently, acetylation at P14, formation of the lactam interstrand linkage by an amide bond between the side-chain functional groups of amino acid residues at P13 and P14, ivDde deprotection at Q1, cleavage of the peptide from the resin, macrolactam cycle formation (module B) by an amide bond between the alpha-carboxyl group of Thr at Q7 and the gamma-amino group of Dab at Q1, and full deprotection were performed as indicated in procedure El above. Finally, the peptides were purified, as described above, and characterized by HPLC-MS. For analytical data, see Ex. 58, 59, 196 and 197 in Table 2. 1.1.1.1 Coupling to the resin via a carboxyl group In a dried flask, 2-chlorotritylchloride resin (polystyrene, 1% crosslinked; loading: 1.4 mMol/g) was swollen in dry CH2CI2 for 30 min (7 mL CH2CI2 per g resin). A solution of 0.8 eq of the Fmoc-protected amino acid and 6 eq of DIPEA in dry CH2CI2/DMF (4/1, v/v) (10 mL per g resin) was added. After shaking for 2-4 h at rt the resin was filtered off and washed successively with CH2CI2, DMF, CH2CI2, DMF and CH2CI2. Then a solution of dry CH2CI2/MeOH/DIPEA (17:2:1, v/v/v) was added (10 mL per g resin). After shaking for 3 x 30 min the resin was filtered off in a pre-weighed sinter funnel and washed successively with CH2CI2, DMF, CH2CI2, MeOH, CH2CI2, MeOH, CH2CI2 (2x) and Et20 (2x). The resin was dried under high vacuum overnight. The final mass of resin was calculated before the qualitative control. Loading was typically 0.6 - 0.7 mMol/g. The following preloaded resins were prepared: Fmoc-Thr(tBu)-2-chlorotrityl resin, Fmoc-DThr(tBu)-2-chlorotrityl resin, Fmoc-Val-2-chlorotrityl resin, Fmoc-DVal-2- chlorotrityl resin, Fmoc-Arg(Pbf)-2-chlorotrityl resin and Fmoc-DArg(Pbf)-2-chlorotrityl resin. 1.1.2 Methods for synthesis on solid support of the fully protected peptide fragment and of fully protected peptide fragments for fragment coupling The synthesis was carried out on a Syro-peptide synthesizer (MultiSynTech GmbH) using 24 to 96 reaction vessels. Unless otherwise indicated, in each vessel were placed 0.05 mMol of the resin, obtained from procedure 1.1.1.1 as described above, and the resin was swelled in CH2CI2 and DMF for 15 min, respectively. The following reaction cycles were programmed and carried out as described in the methods A - L, as described herein below: Step Reagent Time 1 CH2CI2, wash and swell (manual) 1 x 3 min 2 DMF, wash and swell 2 x 30 min 3 20% piperidine/DMF 1 x 5 min and 1 x 15 min 4 DMF, wash 5 x 1 min 5 a) 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq DIC in DMF 1 x 40 min 6 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq HATU + 7.2 eq DIPEA in NMP l x 40 min 7 DMF, wash 5 x 1 min 8 20% piperidine/DMF 1 x 5 min and 1 x 15 min or 2 x 2 min b) 9 DMF, wash 5 x 1 min 10 CH2CI2, wash (at the end of the synthesis) 3 x 1 min a) In the coupling cycle following coupling of an N-alkyl amino acid residue and for coupling of the first protected amino acid residue to Sieber amide resin, step 5 was omitted and step 6 was performed twice instead, b) Reduced times were used for Fmoc deprotection of an amino acid residue having a carboxyl group protected as allyl ester, and for the Fmoc deprotection step of the following coupling cycle. 1.1.2.1 Method A The reaction cycles, as described herein above, were applied for the assembly of the fully protected peptide fragment, using appropriately protected Fmoc amino acid building blocks. Steps 5 to 9 are repeated to add each amino acid residue. 1.1.3.4 Procedure El: Preparation of a peptide having a lactam interstrand linkage in module A and being acetylated at the N-terminal amino group The linear peptide was assembled according to Method A, as described above. After acetylation, performed as described in the corresponding section of procedure C, the lactam interstrand linkage in module A was formed as follows: Formation of lactam interstrand linkage (module A) Selective removal of the allyl and alloc protecting groups from carboxyl and amino functions was performed as described in the corresponding section in procedure A for removal of the alloc protecting group. Subsequently, 2 eq FDPP in 0.5 mL DMF and 2 eq DIPEA in 0.5 mL CH2CI2 were added to the resin in CH2CI2. After stirring the reaction mixture for approximately 16 h, the resin was filtered, and fresh solutions of reagents were added to repeat the procedure. Afterwards, the resin was washed three times with DMF. Subsequent ivDde deprotection (module B), cleavage of the pep... |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: Example 64 is shown in Table 1. Procedure B, as described above, was used for the preparation of the peptide. The peptide was synthesized starting with the amino acid Fmoc-Thr(tBu)-OH, which was grafted to the resin (Fmoc-Thr(tBu)-2-chlorotrityl resin). The linear peptide was synthesized on the solid support according to method A, as described above, using Fmoc-Asp-allyl ester for addition of the amino acid residue at P12. Assembly of the peptide was in the following sequence: Subsequently, allyl deprotection at P12, macrolactam cycle formation (module A) by an amide bond between the liberated a-carboxyl group of Asp at P12 and the alpha-amino group of DDab at P13, ivDde deprotection at Q1, cleavage of the peptide from the resin, macrolactam cycle formation (module B) by an amide bond between the a-carboxyl group of Thr at Q7 and the gamma-amino group of Dab at Q1, and full deprotection were performed as indicated in procedure B above. Finally, the peptide was purified, as described above, and characterized by HPLC-MS. For analytical data, see Ex. 64 in Table 2. 1.1.1.1 Coupling to the resin via a carboxyl group In a dried flask, 2-chlorotritylchloride resin (polystyrene, 1% crosslinked; loading: 1.4 mMol/g) was swollen in dry CH2CI2 for 30 min (7 mL CH2CI2 per g resin). A solution of 0.8 eq of the Fmoc-protected amino acid and 6 eq of DIPEA in dry CH2CI2/DMF (4/1, v/v) (10 mL per g resin) was added. After shaking for 2-4 h at rt the resin was filtered off and washed successively with CH2CI2, DMF, CH2CI2, DMF and CH2CI2. Then a solution of dry CH2CI2/MeOH/DIPEA (17:2:1, v/v/v) was added (10 mL per g resin). After shaking for 3 x 30 min the resin was filtered off in a pre-weighed sinter funnel and washed successively with CH2CI2, DMF, CH2CI2, MeOH, CH2CI2, MeOH, CH2CI2 (2x) and Et20 (2x). The resin was dried under high vacuum overnight. The final mass of resin was calculated before the qualitative control. Loading was typically 0.6 - 0.7 mMol/g. The following preloaded resins were prepared: Fmoc-Thr(tBu)-2-chlorotrityl resin, Fmoc-DThr(tBu)-2-chlorotrityl resin, Fmoc-Val-2-chlorotrityl resin, Fmoc-DVal-2- chlorotrityl resin, Fmoc-Arg(Pbf)-2-chlorotrityl resin and Fmoc-DArg(Pbf)-2-chlorotrityl resin. 1.1.2 Methods for synthesis on solid support of the fully protected peptide fragment and of fully protected peptide fragments for fragment coupling The synthesis was carried out on a Syro-peptide synthesizer (MultiSynTech GmbH) using 24 to 96 reaction vessels. Unless otherwise indicated, in each vessel were placed 0.05 mMol of the resin, obtained from procedure 1.1.1.1 as described above, and the resin was swelled in CH2CI2 and DMF for 15 min, respectively. The following reaction cycles were programmed and carried out as described in the methods A - L, as described herein below: Step Reagent Time 1 CH2CI2, wash and swell (manual) 1 x 3 min 2 DMF, wash and swell 2 x 30 min 3 20% piperidine/DMF 1 x 5 min and 1 x 15 min 4 DMF, wash 5 x 1 min 5 a) 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq DIC in DMF 1 x 40 min 6 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq HATU + 7.2 eq DIPEA in NMP l x 40 min 7 DMF, wash 5 x 1 min 8 20% piperidine/DMF 1 x 5 min and 1 x 15 min or 2 x 2 min b) 9 DMF, wash 5 x 1 min 10 CH2CI2, wash (at the end of the synthesis) 3 x 1 min a) In the coupling cycle following coupling of an N-alkyl amino acid residue and for coupling of the first protected amino acid residue to Sieber amide resin, step 5 was omitted and step 6 was performed twice instead, b) Reduced times were used for Fmoc deprotection of an amino acid residue having a carboxyl group protected as allyl ester, and for the Fmoc deprotection step of the following coupling cycle. 1.1.2.1 Method A The reaction cycles, as described herein above, were applied for the assembly of the fully protected peptide fragment, using appropriately protected Fmoc amino acid building blocks. Steps 5 to 9 are repeated to add each amino acid residue. 1.1.3.1 Procedure B: Preparation of a peptide having macrolactam cycles in module A and module B The linear peptide was assembled on solid support according to Method A, as described above, and subsequently the following steps were performed: Allyl deprotection (module A) Selective removal of the allyl protecting group from a carboxyl function was performed as described in the corresponding section in procedure A for removal of the alloc protecting group. Macrolactam cycle formation (module A) To the resin in CH2CI2, 2 eq FDPP in 0.5 mL DMF and 2 eq DIPEA in 0.5 mL CH2CI2 were added. After stirring the reaction mixture for approximately 16 h, the resin was filtered off, and fresh solutions of reagents were added to repeat the procedure. Subsequently, the resin was washed three times with DMF. IvDde deprotection (module B) The resin was swollen in 1 mL DMF for 10 min and subsequently filtered off. For deprotection, 1 mL of ... |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: Examples 65 to 69 and 71 to 73 are shown in Table 1. Procedure B, as described above, was used for the preparation of the peptides. The peptides were synthesized starting with the amino acid Fmoc-Thr(tBu)-OH, which was grafted to the resin (Fmoc-Thr(tBu)-2-chlorotrityl resin). The linear peptides were synthesized on the solid support according to method A, as described above, using Fmoc protection for the alpha-amino group and allyl protection for the alpha-carboxyl group for the addition of the amino acid residue at P12. Assembly of the peptides was in the following sequence: Subsequently, allyl deprotection at P12, macrolactam cycle formation (module A) by an amide bond between the liberated alpha-carboxyl group of the amino acid residue at P12 and the alpha-amino group of the amino acid residue at P13, ivDde deprotection at Q1, cleavage of the peptide from the resin, macrolactam cycle formation (module B) by an amide bond between the alpha-carboxyl group of Thr at Q7 and the gamma-amino group of Dab at Q1, and full deprotection were performed as indicated in procedure B above. Finally, the peptides were purified, as described above, and characterized by HPLC-MS. For analytical data, see 65 to 69 and 71 to 73 in Table 2. 1.1.1.1 Coupling to the resin via a carboxyl group In a dried flask, 2-chlorotritylchloride resin (polystyrene, 1% crosslinked; loading: 1.4 mMol/g) was swollen in dry CH2CI2 for 30 min (7 mL CH2CI2 per g resin). A solution of 0.8 eq of the Fmoc-protected amino acid and 6 eq of DIPEA in dry CH2CI2/DMF (4/1, v/v) (10 mL per g resin) was added. After shaking for 2-4 h at rt the resin was filtered off and washed successively with CH2CI2, DMF, CH2CI2, DMF and CH2CI2. Then a solution of dry CH2CI2/MeOH/DIPEA (17:2:1, v/v/v) was added (10 mL per g resin). After shaking for 3 x 30 min the resin was filtered off in a pre-weighed sinter funnel and washed successively with CH2CI2, DMF, CH2CI2, MeOH, CH2CI2, MeOH, CH2CI2 (2x) and Et20 (2x). The resin was dried under high vacuum overnight. The final mass of resin was calculated before the qualitative control. Loading was typically 0.6 - 0.7 mMol/g. The following preloaded resins were prepared: Fmoc-Thr(tBu)-2-chlorotrityl resin, Fmoc-DThr(tBu)-2-chlorotrityl resin, Fmoc-Val-2-chlorotrityl resin, Fmoc-DVal-2- chlorotrityl resin, Fmoc-Arg(Pbf)-2-chlorotrityl resin and Fmoc-DArg(Pbf)-2-chlorotrityl resin. 1.1.2 Methods for synthesis on solid support of the fully protected peptide fragment and of fully protected peptide fragments for fragment coupling The synthesis was carried out on a Syro-peptide synthesizer (MultiSynTech GmbH) using 24 to 96 reaction vessels. Unless otherwise indicated, in each vessel were placed 0.05 mMol of the resin, obtained from procedure 1.1.1.1 as described above, and the resin was swelled in CH2CI2 and DMF for 15 min, respectively. The following reaction cycles were programmed and carried out as described in the methods A - L, as described herein below: Step Reagent Time 1 CH2CI2, wash and swell (manual) 1 x 3 min 2 DMF, wash and swell 2 x 30 min 3 20% piperidine/DMF 1 x 5 min and 1 x 15 min 4 DMF, wash 5 x 1 min 5 a) 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq DIC in DMF 1 x 40 min 6 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq HATU + 7.2 eq DIPEA in NMP l x 40 min 7 DMF, wash 5 x 1 min 8 20% piperidine/DMF 1 x 5 min and 1 x 15 min or 2 x 2 min b) 9 DMF, wash 5 x 1 min 10 CH2CI2, wash (at the end of the synthesis) 3 x 1 min a) In the coupling cycle following coupling of an N-alkyl amino acid residue and for coupling of the first protected amino acid residue to Sieber amide resin, step 5 was omitted and step 6 was performed twice instead, b) Reduced times were used for Fmoc deprotection of an amino acid residue having a carboxyl group protected as allyl ester, and for the Fmoc deprotection step of the following coupling cycle. 1.1.2.1 Method A The reaction cycles, as described herein above, were applied for the assembly of the fully protected peptide fragment, using appropriately protected Fmoc amino acid building blocks. Steps 5 to 9 are repeated to add each amino acid residue. 1.1.3.1 Procedure B: Preparation of a peptide having macrolactam cycles in module A and module B The linear peptide was assembled on solid support according to Method A, as described above, and subsequently the following steps were performed: Allyl deprotection (module A) Selective removal of the allyl protecting group from a carboxyl function was performed as described in the corresponding section in procedure A for removal of the alloc protecting group. Macrolactam cycle formation (module A) To the resin in CH2CI2, 2 eq FDPP in 0.5 mL DMF and 2 eq DIPEA in 0.5 mL CH2CI2 were added. After stirring the reaction mixture for approximately 16 h, the resin was filtered off, and fresh solutions of reagents were added to repeat the procedure. Subsequently, the resin w... |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: Examples 65 to 69 and 71 to 73 are shown in Table 1. Procedure B, as described above, was used for the preparation of the peptides. The peptides were synthesized starting with the amino acid Fmoc-Thr(tBu)-OH, which was grafted to the resin (Fmoc-Thr(tBu)-2-chlorotrityl resin). The linear peptides were synthesized on the solid support according to method A, as described above, using Fmoc protection for the alpha-amino group and allyl protection for the alpha-carboxyl group for the addition of the amino acid residue at P12. Assembly of the peptides was in the following sequence: Subsequently, allyl deprotection at P12, macrolactam cycle formation (module A) by an amide bond between the liberated alpha-carboxyl group of the amino acid residue at P12 and the alpha-amino group of the amino acid residue at P13, ivDde deprotection at Q1, cleavage of the peptide from the resin, macrolactam cycle formation (module B) by an amide bond between the alpha-carboxyl group of Thr at Q7 and the gamma-amino group of Dab at Q1, and full deprotection were performed as indicated in procedure B above. Finally, the peptides were purified, as described above, and characterized by HPLC-MS. For analytical data, see 65 to 69 and 71 to 73 in Table 2. 1.1.1.1 Coupling to the resin via a carboxyl group In a dried flask, 2-chlorotritylchloride resin (polystyrene, 1% crosslinked; loading: 1.4 mMol/g) was swollen in dry CH2CI2 for 30 min (7 mL CH2CI2 per g resin). A solution of 0.8 eq of the Fmoc-protected amino acid and 6 eq of DIPEA in dry CH2CI2/DMF (4/1, v/v) (10 mL per g resin) was added. After shaking for 2-4 h at rt the resin was filtered off and washed successively with CH2CI2, DMF, CH2CI2, DMF and CH2CI2. Then a solution of dry CH2CI2/MeOH/DIPEA (17:2:1, v/v/v) was added (10 mL per g resin). After shaking for 3 x 30 min the resin was filtered off in a pre-weighed sinter funnel and washed successively with CH2CI2, DMF, CH2CI2, MeOH, CH2CI2, MeOH, CH2CI2 (2x) and Et20 (2x). The resin was dried under high vacuum overnight. The final mass of resin was calculated before the qualitative control. Loading was typically 0.6 - 0.7 mMol/g. The following preloaded resins were prepared: Fmoc-Thr(tBu)-2-chlorotrityl resin, Fmoc-DThr(tBu)-2-chlorotrityl resin, Fmoc-Val-2-chlorotrityl resin, Fmoc-DVal-2- chlorotrityl resin, Fmoc-Arg(Pbf)-2-chlorotrityl resin and Fmoc-DArg(Pbf)-2-chlorotrityl resin. 1.1.2 Methods for synthesis on solid support of the fully protected peptide fragment and of fully protected peptide fragments for fragment coupling The synthesis was carried out on a Syro-peptide synthesizer (MultiSynTech GmbH) using 24 to 96 reaction vessels. Unless otherwise indicated, in each vessel were placed 0.05 mMol of the resin, obtained from procedure 1.1.1.1 as described above, and the resin was swelled in CH2CI2 and DMF for 15 min, respectively. The following reaction cycles were programmed and carried out as described in the methods A - L, as described herein below: Step Reagent Time 1 CH2CI2, wash and swell (manual) 1 x 3 min 2 DMF, wash and swell 2 x 30 min 3 20% piperidine/DMF 1 x 5 min and 1 x 15 min 4 DMF, wash 5 x 1 min 5 a) 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq DIC in DMF 1 x 40 min 6 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq HATU + 7.2 eq DIPEA in NMP l x 40 min 7 DMF, wash 5 x 1 min 8 20% piperidine/DMF 1 x 5 min and 1 x 15 min or 2 x 2 min b) 9 DMF, wash 5 x 1 min 10 CH2CI2, wash (at the end of the synthesis) 3 x 1 min a) In the coupling cycle following coupling of an N-alkyl amino acid residue and for coupling of the first protected amino acid residue to Sieber amide resin, step 5 was omitted and step 6 was performed twice instead, b) Reduced times were used for Fmoc deprotection of an amino acid residue having a carboxyl group protected as allyl ester, and for the Fmoc deprotection step of the following coupling cycle. 1.1.2.1 Method A The reaction cycles, as described herein above, were applied for the assembly of the fully protected peptide fragment, using appropriately protected Fmoc amino acid building blocks. Steps 5 to 9 are repeated to add each amino acid residue. 1.1.3.1 Procedure B: Preparation of a peptide having macrolactam cycles in module A and module B The linear peptide was assembled on solid support according to Method A, as described above, and subsequently the following steps were performed: Allyl deprotection (module A) Selective removal of the allyl protecting group from a carboxyl function was performed as described in the corresponding section in procedure A for removal of the alloc protecting group. Macrolactam cycle formation (module A) To the resin in CH2CI2, 2 eq FDPP in 0.5 mL DMF and 2 eq DIPEA in 0.5 mL CH2CI2 were added. After stirring the reaction mixture for approximately 16 h, the resin was filtered off, and fresh solutions of reagents were added to repeat the procedure. Subsequently, the resin w... |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: Examples 65 to 69 and 71 to 73 are shown in Table 1. Procedure B, as described above, was used for the preparation of the peptides. The peptides were synthesized starting with the amino acid Fmoc-Thr(tBu)-OH, which was grafted to the resin (Fmoc-Thr(tBu)-2-chlorotrityl resin). The linear peptides were synthesized on the solid support according to method A, as described above, using Fmoc protection for the alpha-amino group and allyl protection for the alpha-carboxyl group for the addition of the amino acid residue at P12. Assembly of the peptides was in the following sequence: Subsequently, allyl deprotection at P12, macrolactam cycle formation (module A) by an amide bond between the liberated alpha-carboxyl group of the amino acid residue at P12 and the alpha-amino group of the amino acid residue at P13, ivDde deprotection at Q1, cleavage of the peptide from the resin, macrolactam cycle formation (module B) by an amide bond between the alpha-carboxyl group of Thr at Q7 and the gamma-amino group of Dab at Q1, and full deprotection were performed as indicated in procedure B above. Finally, the peptides were purified, as described above, and characterized by HPLC-MS. For analytical data, see 65 to 69 and 71 to 73 in Table 2. 1.1.1.1 Coupling to the resin via a carboxyl group In a dried flask, 2-chlorotritylchloride resin (polystyrene, 1% crosslinked; loading: 1.4 mMol/g) was swollen in dry CH2CI2 for 30 min (7 mL CH2CI2 per g resin). A solution of 0.8 eq of the Fmoc-protected amino acid and 6 eq of DIPEA in dry CH2CI2/DMF (4/1, v/v) (10 mL per g resin) was added. After shaking for 2-4 h at rt the resin was filtered off and washed successively with CH2CI2, DMF, CH2CI2, DMF and CH2CI2. Then a solution of dry CH2CI2/MeOH/DIPEA (17:2:1, v/v/v) was added (10 mL per g resin). After shaking for 3 x 30 min the resin was filtered off in a pre-weighed sinter funnel and washed successively with CH2CI2, DMF, CH2CI2, MeOH, CH2CI2, MeOH, CH2CI2 (2x) and Et20 (2x). The resin was dried under high vacuum overnight. The final mass of resin was calculated before the qualitative control. Loading was typically 0.6 - 0.7 mMol/g. The following preloaded resins were prepared: Fmoc-Thr(tBu)-2-chlorotrityl resin, Fmoc-DThr(tBu)-2-chlorotrityl resin, Fmoc-Val-2-chlorotrityl resin, Fmoc-DVal-2- chlorotrityl resin, Fmoc-Arg(Pbf)-2-chlorotrityl resin and Fmoc-DArg(Pbf)-2-chlorotrityl resin. 1.1.2 Methods for synthesis on solid support of the fully protected peptide fragment and of fully protected peptide fragments for fragment coupling The synthesis was carried out on a Syro-peptide synthesizer (MultiSynTech GmbH) using 24 to 96 reaction vessels. Unless otherwise indicated, in each vessel were placed 0.05 mMol of the resin, obtained from procedure 1.1.1.1 as described above, and the resin was swelled in CH2CI2 and DMF for 15 min, respectively. The following reaction cycles were programmed and carried out as described in the methods A - L, as described herein below: Step Reagent Time 1 CH2CI2, wash and swell (manual) 1 x 3 min 2 DMF, wash and swell 2 x 30 min 3 20% piperidine/DMF 1 x 5 min and 1 x 15 min 4 DMF, wash 5 x 1 min 5 a) 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq DIC in DMF 1 x 40 min 6 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq HATU + 7.2 eq DIPEA in NMP l x 40 min 7 DMF, wash 5 x 1 min 8 20% piperidine/DMF 1 x 5 min and 1 x 15 min or 2 x 2 min b) 9 DMF, wash 5 x 1 min 10 CH2CI2, wash (at the end of the synthesis) 3 x 1 min a) In the coupling cycle following coupling of an N-alkyl amino acid residue and for coupling of the first protected amino acid residue to Sieber amide resin, step 5 was omitted and step 6 was performed twice instead, b) Reduced times were used for Fmoc deprotection of an amino acid residue having a carboxyl group protected as allyl ester, and for the Fmoc deprotection step of the following coupling cycle. 1.1.2.1 Method A The reaction cycles, as described herein above, were applied for the assembly of the fully protected peptide fragment, using appropriately protected Fmoc amino acid building blocks. Steps 5 to 9 are repeated to add each amino acid residue. 1.1.3.1 Procedure B: Preparation of a peptide having macrolactam cycles in module A and module B The linear peptide was assembled on solid support according to Method A, as described above, and subsequently the following steps were performed: Allyl deprotection (module A) Selective removal of the allyl protecting group from a carboxyl function was performed as described in the corresponding section in procedure A for removal of the alloc protecting group. Macrolactam cycle formation (module A) To the resin in CH2CI2, 2 eq FDPP in 0.5 mL DMF and 2 eq DIPEA in 0.5 mL CH2CI2 were added. After stirring the reaction mixture for approximately 16 h, the resin was filtered off, and fresh solutions of reagents were added to repeat the procedure. Subsequently, the resin w... |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: Examples 4, 5, 6, 74, 77 and 78 are shown in Table 1. Procedure B, as described above, was used for the preparation of the peptides. The peptides were synthesized starting with the amino acid Fmoc-Thr(tBu)-OH, which was grafted to the resin (Fmoc-Thr(tBu)-2-chlorotrityl resin). The linear peptides were synthesized on the solid support according to method A, as described above, using Fmoc protection for the alpha-amino group and allyl protection for the a-carboxyl group for the addition of the amino acid residue at P13. Assembly of the peptides was in the following sequence: Subsequently, allyl deprotection at P13, macrolactam cycle formation (module A) by an amide bond between the liberated alpha-carboxyl group of the amino acid residue at P13 and the alpha-amino group of the amino acid residue at P14, ivDde deprotection at Q1, cleavage of the peptide from the resin, macrolactam cycle formation (module B) by an amide bond between the alpha-carboxyl group of Thr at Q7 and the gamma-amino group of Dab at Q1, and full deprotection were performed as indicated in procedure B above. Finally, the peptides were purified, as described above, and characterized by HPLC-MS. For analytical data, see Ex. 4, 5, 6, 74, 77 and 78 in Table 2. 1.1.1.1 Coupling to the resin via a carboxyl group In a dried flask, 2-chlorotritylchloride resin (polystyrene, 1% crosslinked; loading: 1.4 mMol/g) was swollen in dry CH2CI2 for 30 min (7 mL CH2CI2 per g resin). A solution of 0.8 eq of the Fmoc-protected amino acid and 6 eq of DIPEA in dry CH2CI2/DMF (4/1, v/v) (10 mL per g resin) was added. After shaking for 2-4 h at rt the resin was filtered off and washed successively with CH2CI2, DMF, CH2CI2, DMF and CH2CI2. Then a solution of dry CH2CI2/MeOH/DIPEA (17:2:1, v/v/v) was added (10 mL per g resin). After shaking for 3 x 30 min the resin was filtered off in a pre-weighed sinter funnel and washed successively with CH2CI2, DMF, CH2CI2, MeOH, CH2CI2, MeOH, CH2CI2 (2x) and Et20 (2x). The resin was dried under high vacuum overnight. The final mass of resin was calculated before the qualitative control. Loading was typically 0.6 - 0.7 mMol/g. The following preloaded resins were prepared: Fmoc-Thr(tBu)-2-chlorotrityl resin, Fmoc-DThr(tBu)-2-chlorotrityl resin, Fmoc-Val-2-chlorotrityl resin, Fmoc-DVal-2- chlorotrityl resin, Fmoc-Arg(Pbf)-2-chlorotrityl resin and Fmoc-DArg(Pbf)-2-chlorotrityl resin. 1.1.2 Methods for synthesis on solid support of the fully protected peptide fragment and of fully protected peptide fragments for fragment coupling The synthesis was carried out on a Syro-peptide synthesizer (MultiSynTech GmbH) using 24 to 96 reaction vessels. Unless otherwise indicated, in each vessel were placed 0.05 mMol of the resin, obtained from procedure 1.1.1.1 as described above, and the resin was swelled in CH2CI2 and DMF for 15 min, respectively. The following reaction cycles were programmed and carried out as described in the methods A - L, as described herein below: Step Reagent Time 1 CH2CI2, wash and swell (manual) 1 x 3 min 2 DMF, wash and swell 2 x 30 min 3 20% piperidine/DMF 1 x 5 min and 1 x 15 min 4 DMF, wash 5 x 1 min 5 a) 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq DIC in DMF 1 x 40 min 6 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq HATU + 7.2 eq DIPEA in NMP l x 40 min 7 DMF, wash 5 x 1 min 8 20% piperidine/DMF 1 x 5 min and 1 x 15 min or 2 x 2 min b) 9 DMF, wash 5 x 1 min 10 CH2CI2, wash (at the end of the synthesis) 3 x 1 min a) In the coupling cycle following coupling of an N-alkyl amino acid residue and for coupling of the first protected amino acid residue to Sieber amide resin, step 5 was omitted and step 6 was performed twice instead, b) Reduced times were used for Fmoc deprotection of an amino acid residue having a carboxyl group protected as allyl ester, and for the Fmoc deprotection step of the following coupling cycle. 1.1.2.1 Method A The reaction cycles, as described herein above, were applied for the assembly of the fully protected peptide fragment, using appropriately protected Fmoc amino acid building blocks. Steps 5 to 9 are repeated to add each amino acid residue. 1.1.3.1 Procedure B: Preparation of a peptide having macrolactam cycles in module A and module B The linear peptide was assembled on solid support according to Method A, as described above, and subsequently the following steps were performed: Allyl deprotection (module A) Selective removal of the allyl protecting group from a carboxyl function was performed as described in the corresponding section in procedure A for removal of the alloc protecting group. Macrolactam cycle formation (module A) To the resin in CH2CI2, 2 eq FDPP in 0.5 mL DMF and 2 eq DIPEA in 0.5 mL CH2CI2 were added. After stirring the reaction mixture for approximately 16 h, the resin was filtered off, and fresh solutions of reagents were added to repeat the procedure. Subsequently, the resin... |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: Examples 65 to 69 and 71 to 73 are shown in Table 1. Procedure B, as described above, was used for the preparation of the peptides. The peptides were synthesized starting with the amino acid Fmoc-Thr(tBu)-OH, which was grafted to the resin (Fmoc-Thr(tBu)-2-chlorotrityl resin). The linear peptides were synthesized on the solid support according to method A, as described above, using Fmoc protection for the alpha-amino group and allyl protection for the alpha-carboxyl group for the addition of the amino acid residue at P12. Assembly of the peptides was in the following sequence: Subsequently, allyl deprotection at P12, macrolactam cycle formation (module A) by an amide bond between the liberated alpha-carboxyl group of the amino acid residue at P12 and the alpha-amino group of the amino acid residue at P13, ivDde deprotection at Q1, cleavage of the peptide from the resin, macrolactam cycle formation (module B) by an amide bond between the alpha-carboxyl group of Thr at Q7 and the gamma-amino group of Dab at Q1, and full deprotection were performed as indicated in procedure B above. Finally, the peptides were purified, as described above, and characterized by HPLC-MS. For analytical data, see 65 to 69 and 71 to 73 in Table 2. 1.1.1.1 Coupling to the resin via a carboxyl group In a dried flask, 2-chlorotritylchloride resin (polystyrene, 1% crosslinked; loading: 1.4 mMol/g) was swollen in dry CH2CI2 for 30 min (7 mL CH2CI2 per g resin). A solution of 0.8 eq of the Fmoc-protected amino acid and 6 eq of DIPEA in dry CH2CI2/DMF (4/1, v/v) (10 mL per g resin) was added. After shaking for 2-4 h at rt the resin was filtered off and washed successively with CH2CI2, DMF, CH2CI2, DMF and CH2CI2. Then a solution of dry CH2CI2/MeOH/DIPEA (17:2:1, v/v/v) was added (10 mL per g resin). After shaking for 3 x 30 min the resin was filtered off in a pre-weighed sinter funnel and washed successively with CH2CI2, DMF, CH2CI2, MeOH, CH2CI2, MeOH, CH2CI2 (2x) and Et20 (2x). The resin was dried under high vacuum overnight. The final mass of resin was calculated before the qualitative control. Loading was typically 0.6 - 0.7 mMol/g. The following preloaded resins were prepared: Fmoc-Thr(tBu)-2-chlorotrityl resin, Fmoc-DThr(tBu)-2-chlorotrityl resin, Fmoc-Val-2-chlorotrityl resin, Fmoc-DVal-2- chlorotrityl resin, Fmoc-Arg(Pbf)-2-chlorotrityl resin and Fmoc-DArg(Pbf)-2-chlorotrityl resin. 1.1.2 Methods for synthesis on solid support of the fully protected peptide fragment and of fully protected peptide fragments for fragment coupling The synthesis was carried out on a Syro-peptide synthesizer (MultiSynTech GmbH) using 24 to 96 reaction vessels. Unless otherwise indicated, in each vessel were placed 0.05 mMol of the resin, obtained from procedure 1.1.1.1 as described above, and the resin was swelled in CH2CI2 and DMF for 15 min, respectively. The following reaction cycles were programmed and carried out as described in the methods A - L, as described herein below: Step Reagent Time 1 CH2CI2, wash and swell (manual) 1 x 3 min 2 DMF, wash and swell 2 x 30 min 3 20% piperidine/DMF 1 x 5 min and 1 x 15 min 4 DMF, wash 5 x 1 min 5 a) 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq DIC in DMF 1 x 40 min 6 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq HATU + 7.2 eq DIPEA in NMP l x 40 min 7 DMF, wash 5 x 1 min 8 20% piperidine/DMF 1 x 5 min and 1 x 15 min or 2 x 2 min b) 9 DMF, wash 5 x 1 min 10 CH2CI2, wash (at the end of the synthesis) 3 x 1 min a) In the coupling cycle following coupling of an N-alkyl amino acid residue and for coupling of the first protected amino acid residue to Sieber amide resin, step 5 was omitted and step 6 was performed twice instead, b) Reduced times were used for Fmoc deprotection of an amino acid residue having a carboxyl group protected as allyl ester, and for the Fmoc deprotection step of the following coupling cycle. 1.1.2.1 Method A The reaction cycles, as described herein above, were applied for the assembly of the fully protected peptide fragment, using appropriately protected Fmoc amino acid building blocks. Steps 5 to 9 are repeated to add each amino acid residue. 1.1.3.1 Procedure B: Preparation of a peptide having macrolactam cycles in module A and module B The linear peptide was assembled on solid support according to Method A, as described above, and subsequently the following steps were performed: Allyl deprotection (module A) Selective removal of the allyl protecting group from a carboxyl function was performed as described in the corresponding section in procedure A for removal of the alloc protecting group. Macrolactam cycle formation (module A) To the resin in CH2CI2, 2 eq FDPP in 0.5 mL DMF and 2 eq DIPEA in 0.5 mL CH2CI2 were added. After stirring the reaction mixture for approximately 16 h, the resin was filtered off, and fresh solutions of reagents were added to repeat the procedure. Subsequently, the resin w... |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: Examples 65 to 69 and 71 to 73 are shown in Table 1. Procedure B, as described above, was used for the preparation of the peptides. The peptides were synthesized starting with the amino acid Fmoc-Thr(tBu)-OH, which was grafted to the resin (Fmoc-Thr(tBu)-2-chlorotrityl resin). The linear peptides were synthesized on the solid support according to method A, as described above, using Fmoc protection for the alpha-amino group and allyl protection for the alpha-carboxyl group for the addition of the amino acid residue at P12. Assembly of the peptides was in the following sequence: Subsequently, allyl deprotection at P12, macrolactam cycle formation (module A) by an amide bond between the liberated alpha-carboxyl group of the amino acid residue at P12 and the alpha-amino group of the amino acid residue at P13, ivDde deprotection at Q1, cleavage of the peptide from the resin, macrolactam cycle formation (module B) by an amide bond between the alpha-carboxyl group of Thr at Q7 and the gamma-amino group of Dab at Q1, and full deprotection were performed as indicated in procedure B above. Finally, the peptides were purified, as described above, and characterized by HPLC-MS. For analytical data, see 65 to 69 and 71 to 73 in Table 2. 1.1.1.1 Coupling to the resin via a carboxyl group In a dried flask, 2-chlorotritylchloride resin (polystyrene, 1% crosslinked; loading: 1.4 mMol/g) was swollen in dry CH2CI2 for 30 min (7 mL CH2CI2 per g resin). A solution of 0.8 eq of the Fmoc-protected amino acid and 6 eq of DIPEA in dry CH2CI2/DMF (4/1, v/v) (10 mL per g resin) was added. After shaking for 2-4 h at rt the resin was filtered off and washed successively with CH2CI2, DMF, CH2CI2, DMF and CH2CI2. Then a solution of dry CH2CI2/MeOH/DIPEA (17:2:1, v/v/v) was added (10 mL per g resin). After shaking for 3 x 30 min the resin was filtered off in a pre-weighed sinter funnel and washed successively with CH2CI2, DMF, CH2CI2, MeOH, CH2CI2, MeOH, CH2CI2 (2x) and Et20 (2x). The resin was dried under high vacuum overnight. The final mass of resin was calculated before the qualitative control. Loading was typically 0.6 - 0.7 mMol/g. The following preloaded resins were prepared: Fmoc-Thr(tBu)-2-chlorotrityl resin, Fmoc-DThr(tBu)-2-chlorotrityl resin, Fmoc-Val-2-chlorotrityl resin, Fmoc-DVal-2- chlorotrityl resin, Fmoc-Arg(Pbf)-2-chlorotrityl resin and Fmoc-DArg(Pbf)-2-chlorotrityl resin. 1.1.2 Methods for synthesis on solid support of the fully protected peptide fragment and of fully protected peptide fragments for fragment coupling The synthesis was carried out on a Syro-peptide synthesizer (MultiSynTech GmbH) using 24 to 96 reaction vessels. Unless otherwise indicated, in each vessel were placed 0.05 mMol of the resin, obtained from procedure 1.1.1.1 as described above, and the resin was swelled in CH2CI2 and DMF for 15 min, respectively. The following reaction cycles were programmed and carried out as described in the methods A - L, as described herein below: Step Reagent Time 1 CH2CI2, wash and swell (manual) 1 x 3 min 2 DMF, wash and swell 2 x 30 min 3 20% piperidine/DMF 1 x 5 min and 1 x 15 min 4 DMF, wash 5 x 1 min 5 a) 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq DIC in DMF 1 x 40 min 6 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq HATU + 7.2 eq DIPEA in NMP l x 40 min 7 DMF, wash 5 x 1 min 8 20% piperidine/DMF 1 x 5 min and 1 x 15 min or 2 x 2 min b) 9 DMF, wash 5 x 1 min 10 CH2CI2, wash (at the end of the synthesis) 3 x 1 min a) In the coupling cycle following coupling of an N-alkyl amino acid residue and for coupling of the first protected amino acid residue to Sieber amide resin, step 5 was omitted and step 6 was performed twice instead, b) Reduced times were used for Fmoc deprotection of an amino acid residue having a carboxyl group protected as allyl ester, and for the Fmoc deprotection step of the following coupling cycle. 1.1.2.1 Method A The reaction cycles, as described herein above, were applied for the assembly of the fully protected peptide fragment, using appropriately protected Fmoc amino acid building blocks. Steps 5 to 9 are repeated to add each amino acid residue. 1.1.3.1 Procedure B: Preparation of a peptide having macrolactam cycles in module A and module B The linear peptide was assembled on solid support according to Method A, as described above, and subsequently the following steps were performed: Allyl deprotection (module A) Selective removal of the allyl protecting group from a carboxyl function was performed as described in the corresponding section in procedure A for removal of the alloc protecting group. Macrolactam cycle formation (module A) To the resin in CH2CI2, 2 eq FDPP in 0.5 mL DMF and 2 eq DIPEA in 0.5 mL CH2CI2 were added. After stirring the reaction mixture for approximately 16 h, the resin was filtered off, and fresh solutions of reagents were added to repeat the procedure. Subsequently, the resin w... |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: Example 198 is shown in Table 1. Procedure P, as described above, was used for the preparation of the peptide. The peptide was synthesized starting with the amino acid Fmoc-Thr-allyl ester, which was grafted to the resin (Fmoc-Thr(-2-chlorotrityl resin)-allyl). The peptide was synthesized on the solid support according to method K, as described above, including macrolactam cycle formation (module B) and using Boc-Glu(2-PhiPr)-OH for addition of the amino acid residue at P14. Following coupling of the Fmoc amino acid building block at position Q1, macrolactam cycle formation (module B) by an amide bond between the a-carboxyl group of Thr at Q7 and the gamma-amino group of Dab at Q1 was performed as described in the corresponding section of procedure G. Assembly of the peptide was in the following sequence: Subsequently, cleavage of the peptide from the resin and removal of the 2-phenyl- isopropyl protecting group at P14, formation of a lactam interstrand linkage by an amide bond between the liberated gamma-carboxyl group of Glu at P14 and the gamma-amino group of Dab at P13, and full deprotection were performed as indicated in procedure P above. Finally, the peptide was purified, as described above, and characterized by HPLC-MS. For analytical data, see Ex. 198 in Table 2. 1.1.1.2 Coupling to the resin via a side chain hydroxy group In a dried flask, 2-chlorotritylchloride resin (polystyrene, 1% crosslinked; loading: 1.4 mMol/g) was swollen in dry 1,2 dichloroethane for 30 min (4.5 mL 1,2 dichloroethane per g resin). A suspension of 3.2 eq of the Fmoc-protected amino acid ester and 2 eq of NMM in dry 1,2-dichloroethane (10 mL per g resin) was added. After stirring under reflux for 1-2 h the resin was filtered off and washed with 1,2 dichloroethane (3x) and with CH2CI2. Then a solution of dry CH2CI2/MeOH/DIPEA (17:2:1, v/v/v) was added (10 mL per g resin). After shaking for 3 x 30 min the resin was filtered off in a pre-weighed sinter funnel and washed successively with CH2CI2, DMF, CH2CI2, MeOH, CH2CI2, MeOH, CH2CI2 (2x) and Et20 (2x). The resin was dried under high vacuum overnight. The final mass of resin was calculated before the qualitative control. Loading was typically 0.2 - 0.3 mMol/g. The following preloaded resin was prepared: Fmoc-Thr(-2-chlorotrityl resin)-allyl. 1.1.2 Methods for synthesis on solid support of the fully protected peptide fragment and of fully protected peptide fragments for fragment coupling The synthesis was carried out on a Syro-peptide synthesizer (MultiSynTech GmbH) using 24 to 96 reaction vessels. Unless otherwise indicated, in each vessel were placed 0.05 mMol of the resin, obtained from procedure 1.1.1.1 as described above, and the resin was swelled in CH2CI2 and DMF for 15 min, respectively. The following reaction cycles were programmed and carried out as described in the methods A - L, as described herein below: Step Reagent Time 1 CH2CI2, wash and swell (manual) 1 x 3 min 2 DMF, wash and swell 2 x 30 min 3 20% piperidine/DMF 1 x 5 min and 1 x 15 min 4 DMF, wash 5 x 1 min 5 a) 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq DIC in DMF 1 x 40 min 6 3.6 eq appropriately protected amino acid and 3.6 eq HOAt in DMF or NMP + 3.6 eq HATU + 7.2 eq DIPEA in NMP l x 40 min 7 DMF, wash 5 x 1 min 8 20% piperidine/DMF 1 x 5 min and 1 x 15 min or 2 x 2 min b) 9 DMF, wash 5 x 1 min 10 CH2CI2, wash (at the end of the synthesis) 3 x 1 min a) In the coupling cycle following coupling of an N-alkyl amino acid residue and for coupling of the first protected amino acid residue to Sieber amide resin, step 5 was omitted and step 6 was performed twice instead, b) Reduced times were used for Fmoc deprotection of an amino acid residue having a carboxyl group protected as allyl ester, and for the Fmoc deprotection step of the following coupling cycle. 1.1.2.11 Method K The reaction cycles, as described herein above, were applied for the assembly of the fully protected peptide fragment, using 0.05 mMol of the resin obtained from procedure 1.1.1.2 and appropriately protected Fmoc amino acid building blocks, except for the last coupling. For the latter an appropriately protected Boc amino acid building block was used. In a first part, a fully protected peptide fragment encompassing amino acid residues of module B was prepared. Steps 5 to 9 are repeated to add each amino acid residue, except for the last amino acid residue of this peptide fragment, which was added by steps 5 to 7. Subsequently, macrolactam cycle formation (module B) was performed as described in the corresponding section of procedure G herein below, followed by steps 8 to 9 for Fmoc deprotection and washing. Assembly of the fully protected peptide fragment was then completed. Steps 5 to 9 were repeated to add each remaining amino acid residue, except for the last amino acid residue, which was added by steps 5 to 7, followed by step 10.1.1.3.7 Procedure G: Preparation of a peptide havi... |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
Fmoc deprotection: In general, to the resin pre-swollen in DCM was added 20percent piperidine in DMF and stirred at rt (2x10 min). The solution was drained and the resin washed with DMF (3x10 mL), DCM (3x10 mL) and MeOH (3x10 mL). In the cases were Fmoc 38 SUBSTITUTE SHEET RULE 26 deprotection was done in Cy5 containing peptides, a solution of 2percent DBU in DMF (2 x 10 min, rt) was used instead. Aminoacid coupling: A solution of the appropriate D- or L-amino acid (3.0 eq per amine) and Oxyma (3.0 eq) in DMF (0.1 M) was stirred for 10 min. DIC (3.0 eq) was added and stirred for 1 min. The pre-activated mixture was then added to the resin pre-swollen in DCM and the reaction heated at 50°C for 30 min. The solution was drained and washed with DMF (3x10 ml_), DCM (3x10 ml_) and MeOH (3x10 ml_). The completion of the coupling and deprotection reactions was monitored by Kaiser test or Chloranil test when secondary amines are involved. The side chain protecting group used was Boc for arginine, tryptophan and lysine. Fmoc-Lys(Dde)-OH was used as orthogonal reagent to introduce the dyes. Coupling of other carboxylic acids: Coupling of {2-[2-(Fmoc-amino)ethoxy]ethoxy}acetic acid (PEG), <strong>[76823-03-5]5-Carboxyfluorescein</strong> (FAM), Fmoc-Lys(N3)-OH and MethylRed-Lys-(4- pentynoyl)-OH was done following the same procedure described for Aminoacid coupling. Dde deprotection: (a) Dde deprotection in non-containing Fmoc peptides was done following the next procedure: to the resin pre-swollen in DCM was added 2percent hydrazine in DMF and stirred at rt (5x10 min). The solution was drained and the resin washed with DMF (3x10 ml_), DCM (3x10 ml_) and MeOH (3x10 ml_). (b) Selective Dde deprotection in Fmoc- protected peptides was done with a solution containing Imidazole (1.35 mmol) and Hydroxylamine hydrochloride (1.80 mmol) in NMP (5 ml_). [Diaz-Mochon, J. J.; Bialy, L; Bradley, M. Org Lett 2004, 6 (7), 1127-1 129]. After complete dissolution 5 volumes of this solution were diluted with 1 volume of CH2CI2 and the resin was treated with the final mixture for 3h at room temperature. The solution was drained and the resin washed with DMF (3x10 ml_), DCM (3x10 ml_) and MeOH (3x10 ml_). |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: Solid phase peptide synthesis (0.2 mmol scale) was performed on aminomethyl PS resin (1.0 mmol/g) based on the Fmoc based strategy. HMPB linker was attached to the resin using general method A, and coupling of the first amino acid residue to theHMPB-PS resin was performed according to general method B or C. The degree of attachment of the first amino acid residue to the resin was determined using UV spectrophotometry.16 The desired peptide sequences were synthesised using general method D onTributeTM peptide synthesiser, and peptide coupling of unnatural amino acids was performed manually according to general method E. The linear peptides were cleaved from the resin using general method F, and the crude products were cyclised using general method G. The side-chain protecting groups were removed from the cyclised peptides according to general method H, and the allyl protecting group was removed according to general method I. The crude peptides were purified according to general method J |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: 100mg 2-chlorotrityl resin (0.5mmol/g) was swollen in dry DCM for 30min and treated with the first building block (2.0equiv) and DIEA (4.0equiv) in dry DCM. After it was shook for 1h, 80muL MeOH was added to cap the unreacted resin for another 20min. The loaded resin was washed by DCM (3×2mL) and DMF (3×2mL). Fmoc deprotection was achieved by shaken with 2mL 20percent solution of piperidine in DMF for 20min. The following Fmoc- or Boc-amino acids (4.0equiv) was coupled using 32 HATU (4.0equiv) as coupling reagent and DIEA (8.0 equiv) as base. The mixture was shaken in DMF for 1h. After each Fmoc deprotection and coupling reaction, the resin was washed by DMF (3×2mL), DCM (3×2mL) and DMF (3×2mL). The loaded resin was washed by DCM (3×2mL) and then a solution of Pd(PPh3)4 (1.0equiv) and phenylsilane (25equiv) in 2mL anhydrous DCM was added. The mixture was shaken for 1h under the protection of dry argon. After Alloc deprotection was completed, the resin was washed by DMF (3×2mL), DCM (3×2mL) and DMF (3×2mL). After coupling of the last building block, the resin was washed by DCM (3 2 mL), DMF (3 2 mL) and DCM (5 2 mL). Then a cocktail of DCM/AcOH/TFE (v/v/v = 8:1:1) was added to the resinand shaken for 1.5 h. Then the resin was filtrated off and rinsedwith DCM (5 2 mL). The combined filtrates were concentrated under low pressure and azeotroped several times with DCM to remove the Acetic acid. The side-chain-protected peptides were obtained as white solid. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: General method for preparation of the peptide and introduction of the substituent The preparation of the peptide was carried out with SPPS using Fmoc based chemistry on a Prelude Solid Phase Peptide Synthesizer from Protein Technologies (Tucson, AZ 85714 U.S.A.). The Fmoc-protected amino acids used in the methods were the standard recommended : Fmoc-Ala-OH, Fmoc-Arg(Pbf)-OH, Fmoc- Asn(Trt)-OH, Fmoc-Asp(OtBu)-OH, Fmoc-Cys(Trt)-OH, Fmoc-Cys(Mmt)-OH, Fmoc-Gln(Trt)-OH, Fmoc-Glu(OtBu)-OH, Fmoc-Gly-OH, Fmoc-His(Trt)-OH, Fmoc- Ile-OH, Fmoc-Leu-OH, Fmoc-Lys(Boc)-OH, Boc-Lys(Fmoc)-OH Fmoc-Phe-OH, Fmoc-Pro-OH, Fmoc-Ser(tBu)-OH, Fmoc-Thr(tBu)-OH, Fmoc-Trp(Boc)-OH, Fmoc- Tyr(tBu)-OH, Fmoc-Val-OH and Fmoc-Lys(Mtt)-OH supplied from e.g. Anaspec, Bachem, Iris Biotech or NovabioChem. A Wang resin preloaded with an amino acid such as Fmoc-Phe-Wang resin or the like was used (for derivatives containing Nphe, 4-CI-Nphe, or alpha-Me-Phe, a 2-Chlorotrityl resin was used). Fmoc- deprotection was achieved with 20% piperidine in NMP. Peptide couplings were performed by using DIC/Oxyma Pure with collidine. Amino acid/Oxyma Pure solutions (0.3 M/0.3 M in DMF at a molar excess of 3-10 fold) was added to the resin followed by the same molar equivalent of DIC (3 M in NMP) followed by collidine (3 M in NMP). Fmoc-Cys(Trt)-OH was used for peptides prepared for methylene bridge introduction according to method A, while Fmoc-Cys(Mmt)-OH was used for peptides prepared for methylene bridge introduction according to method B. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: General method for preparation of the peptide and introduction of the substituent The preparation of the peptide was carried out with SPPS using Fmoc based chemistry on a Prelude Solid Phase Peptide Synthesizer from Protein Technologies (Tucson, AZ 85714 U.S.A.). The Fmoc-protected amino acids used in the methods were the standard recommended : Fmoc-Ala-OH, Fmoc-Arg(Pbf)-OH, Fmoc- Asn(Trt)-OH, Fmoc-Asp(OtBu)-OH, Fmoc-Cys(Trt)-OH, Fmoc-Cys(Mmt)-OH, Fmoc-Gln(Trt)-OH, Fmoc-Glu(OtBu)-OH, Fmoc-Gly-OH, Fmoc-His(Trt)-OH, Fmoc- Ile-OH, Fmoc-Leu-OH, Fmoc-Lys(Boc)-OH, Boc-Lys(Fmoc)-OH Fmoc-Phe-OH, Fmoc-Pro-OH, Fmoc-Ser(tBu)-OH, Fmoc-Thr(tBu)-OH, Fmoc-Trp(Boc)-OH, Fmoc- Tyr(tBu)-OH, Fmoc-Val-OH and Fmoc-Lys(Mtt)-OH supplied from e.g. Anaspec, Bachem, Iris Biotech or NovabioChem. A Wang resin preloaded with an amino acid such as Fmoc-Phe-Wang resin or the like was used (for derivatives containing Nphe, 4-CI-Nphe, or alpha-Me-Phe, a 2-Chlorotrityl resin was used). Fmoc- deprotection was achieved with 20% piperidine in NMP. Peptide couplings were performed by using DIC/Oxyma Pure with collidine. Amino acid/Oxyma Pure solutions (0.3 M/0.3 M in DMF at a molar excess of 3-10 fold) was added to the resin followed by the same molar equivalent of DIC (3 M in NMP) followed by collidine (3 M in NMP). Fmoc-Cys(Trt)-OH was used for peptides prepared for methylene bridge introduction according to method A, while Fmoc-Cys(Mmt)-OH was used for peptides prepared for methylene bridge introduction according to method B. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: General method for preparation of the peptide and introduction of the substituent The preparation of the peptide was carried out with SPPS using Fmoc based chemistry on a Prelude Solid Phase Peptide Synthesizer from Protein Technologies (Tucson, AZ 85714 U.S.A.). The Fmoc-protected amino acids used in the methods were the standard recommended : Fmoc-Ala-OH, Fmoc-Arg(Pbf)-OH, Fmoc- Asn(Trt)-OH, Fmoc-Asp(OtBu)-OH, Fmoc-Cys(Trt)-OH, Fmoc-Cys(Mmt)-OH, Fmoc-Gln(Trt)-OH, Fmoc-Glu(OtBu)-OH, Fmoc-Gly-OH, Fmoc-His(Trt)-OH, Fmoc- Ile-OH, Fmoc-Leu-OH, Fmoc-Lys(Boc)-OH, Boc-Lys(Fmoc)-OH Fmoc-Phe-OH, Fmoc-Pro-OH, Fmoc-Ser(tBu)-OH, Fmoc-Thr(tBu)-OH, Fmoc-Trp(Boc)-OH, Fmoc- Tyr(tBu)-OH, Fmoc-Val-OH and Fmoc-Lys(Mtt)-OH supplied from e.g. Anaspec, Bachem, Iris Biotech or NovabioChem. A Wang resin preloaded with an amino acid such as Fmoc-Phe-Wang resin or the like was used (for derivatives containing Nphe, 4-CI-Nphe, or alpha-Me-Phe, a 2-Chlorotrityl resin was used). Fmoc- deprotection was achieved with 20% piperidine in NMP. Peptide couplings were performed by using DIC/Oxyma Pure with collidine. Amino acid/Oxyma Pure solutions (0.3 M/0.3 M in DMF at a molar excess of 3-10 fold) was added to the resin followed by the same molar equivalent of DIC (3 M in NMP) followed by collidine (3 M in NMP). Fmoc-Cys(Trt)-OH was used for peptides prepared for methylene bridge introduction according to method A, while Fmoc-Cys(Mmt)-OH was used for peptides prepared for methylene bridge introduction according to method B. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: General method for preparation of the peptide and introduction of the substituent The preparation of the peptide was carried out with SPPS using Fmoc based chemistry on a Prelude Solid Phase Peptide Synthesizer from Protein Technologies (Tucson, AZ 85714 U.S.A.). The Fmoc-protected amino acids used in the methods were the standard recommended : Fmoc-Ala-OH, Fmoc-Arg(Pbf)-OH, Fmoc- Asn(Trt)-OH, Fmoc-Asp(OtBu)-OH, Fmoc-Cys(Trt)-OH, Fmoc-Cys(Mmt)-OH, Fmoc-Gln(Trt)-OH, Fmoc-Glu(OtBu)-OH, Fmoc-Gly-OH, Fmoc-His(Trt)-OH, Fmoc- Ile-OH, Fmoc-Leu-OH, Fmoc-Lys(Boc)-OH, Boc-Lys(Fmoc)-OH Fmoc-Phe-OH, Fmoc-Pro-OH, Fmoc-Ser(tBu)-OH, Fmoc-Thr(tBu)-OH, Fmoc-Trp(Boc)-OH, Fmoc- Tyr(tBu)-OH, Fmoc-Val-OH and Fmoc-Lys(Mtt)-OH supplied from e.g. Anaspec, Bachem, Iris Biotech or NovabioChem. A Wang resin preloaded with an amino acid such as Fmoc-Phe-Wang resin or the like was used (for derivatives containing Nphe, 4-CI-Nphe, or alpha-Me-Phe, a 2-Chlorotrityl resin was used). Fmoc- deprotection was achieved with 20% piperidine in NMP. Peptide couplings were performed by using DIC/Oxyma Pure with collidine. Amino acid/Oxyma Pure solutions (0.3 M/0.3 M in DMF at a molar excess of 3-10 fold) was added to the resin followed by the same molar equivalent of DIC (3 M in NMP) followed by collidine (3 M in NMP). Fmoc-Cys(Trt)-OH was used for peptides prepared for methylene bridge introduction according to method A, while Fmoc-Cys(Mmt)-OH was used for peptides prepared for methylene bridge introduction according to method B. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: General method for preparation of the peptide and introduction of the substituent The preparation of the peptide was carried out with SPPS using Fmoc based chemistry on a Prelude Solid Phase Peptide Synthesizer from Protein Technologies (Tucson, AZ 85714 U.S.A.). The Fmoc-protected amino acids used in the methods were the standard recommended : Fmoc-Ala-OH, Fmoc-Arg(Pbf)-OH, Fmoc- Asn(Trt)-OH, Fmoc-Asp(OtBu)-OH, Fmoc-Cys(Trt)-OH, Fmoc-Cys(Mmt)-OH, Fmoc-Gln(Trt)-OH, Fmoc-Glu(OtBu)-OH, Fmoc-Gly-OH, Fmoc-His(Trt)-OH, Fmoc- Ile-OH, Fmoc-Leu-OH, Fmoc-Lys(Boc)-OH, Boc-Lys(Fmoc)-OH Fmoc-Phe-OH, Fmoc-Pro-OH, Fmoc-Ser(tBu)-OH, Fmoc-Thr(tBu)-OH, Fmoc-Trp(Boc)-OH, Fmoc- Tyr(tBu)-OH, Fmoc-Val-OH and Fmoc-Lys(Mtt)-OH supplied from e.g. Anaspec, Bachem, Iris Biotech or NovabioChem. A Wang resin preloaded with an amino acid such as Fmoc-Phe-Wang resin or the like was used (for derivatives containing Nphe, 4-CI-Nphe, or alpha-Me-Phe, a 2-Chlorotrityl resin was used). Fmoc- deprotection was achieved with 20% piperidine in NMP. Peptide couplings were performed by using DIC/Oxyma Pure with collidine. Amino acid/Oxyma Pure solutions (0.3 M/0.3 M in DMF at a molar excess of 3-10 fold) was added to the resin followed by the same molar equivalent of DIC (3 M in NMP) followed by collidine (3 M in NMP). Fmoc-Cys(Trt)-OH was used for peptides prepared for methylene bridge introduction according to method A, while Fmoc-Cys(Mmt)-OH was used for peptides prepared for methylene bridge introduction according to method B. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: General method for preparation of the peptide and introduction of the substituent The preparation of the peptide was carried out with SPPS using Fmoc based chemistry on a Prelude Solid Phase Peptide Synthesizer from Protein Technologies (Tucson, AZ 85714 U.S.A.). The Fmoc-protected amino acids used in the methods were the standard recommended : Fmoc-Ala-OH, Fmoc-Arg(Pbf)-OH, Fmoc- Asn(Trt)-OH, Fmoc-Asp(OtBu)-OH, Fmoc-Cys(Trt)-OH, Fmoc-Cys(Mmt)-OH, Fmoc-Gln(Trt)-OH, Fmoc-Glu(OtBu)-OH, Fmoc-Gly-OH, Fmoc-His(Trt)-OH, Fmoc- Ile-OH, Fmoc-Leu-OH, Fmoc-Lys(Boc)-OH, Boc-Lys(Fmoc)-OH Fmoc-Phe-OH, Fmoc-Pro-OH, Fmoc-Ser(tBu)-OH, Fmoc-Thr(tBu)-OH, Fmoc-Trp(Boc)-OH, Fmoc- Tyr(tBu)-OH, Fmoc-Val-OH and Fmoc-Lys(Mtt)-OH supplied from e.g. Anaspec, Bachem, Iris Biotech or NovabioChem. A Wang resin preloaded with an amino acid such as Fmoc-Phe-Wang resin or the like was used (for derivatives containing Nphe, 4-CI-Nphe, or alpha-Me-Phe, a 2-Chlorotrityl resin was used). Fmoc- deprotection was achieved with 20% piperidine in NMP. Peptide couplings were performed by using DIC/Oxyma Pure with collidine. Amino acid/Oxyma Pure solutions (0.3 M/0.3 M in DMF at a molar excess of 3-10 fold) was added to the resin followed by the same molar equivalent of DIC (3 M in NMP) followed by collidine (3 M in NMP). Fmoc-Cys(Trt)-OH was used for peptides prepared for methylene bridge introduction according to method A, while Fmoc-Cys(Mmt)-OH was used for peptides prepared for methylene bridge introduction according to method B. |
Yield | Reaction Conditions | Operation in experiment |
---|---|---|
General procedure: General method for preparation of the peptide and introduction of the substituent The preparation of the peptide was carried out with SPPS using Fmoc based chemistry on a Prelude Solid Phase Peptide Synthesizer from Protein Technologies (Tucson, AZ 85714 U.S.A.). The Fmoc-protected amino acids used in the methods were the standard recommended : Fmoc-Ala-OH, Fmoc-Arg(Pbf)-OH, Fmoc- Asn(Trt)-OH, Fmoc-Asp(OtBu)-OH, Fmoc-Cys(Trt)-OH, Fmoc-Cys(Mmt)-OH, Fmoc-Gln(Trt)-OH, Fmoc-Glu(OtBu)-OH, Fmoc-Gly-OH, Fmoc-His(Trt)-OH, Fmoc- Ile-OH, Fmoc-Leu-OH, Fmoc-Lys(Boc)-OH, Boc-Lys(Fmoc)-OH Fmoc-Phe-OH, Fmoc-Pro-OH, Fmoc-Ser(tBu)-OH, Fmoc-Thr(tBu)-OH, Fmoc-Trp(Boc)-OH, Fmoc- Tyr(tBu)-OH, Fmoc-Val-OH and Fmoc-Lys(Mtt)-OH supplied from e.g. Anaspec, Bachem, Iris Biotech or NovabioChem. A Wang resin preloaded with an amino acid such as Fmoc-Phe-Wang resin or the like was used (for derivatives containing Nphe, 4-CI-Nphe, or alpha-Me-Phe, a 2-Chlorotrityl resin was used). Fmoc- deprotection was achieved with 20% piperidine in NMP. Peptide couplings were performed by using DIC/Oxyma Pure with collidine. Amino acid/Oxyma Pure solutions (0.3 M/0.3 M in DMF at a molar excess of 3-10 fold) was added to the resin followed by the same molar equivalent of DIC (3 M in NMP) followed by collidine (3 M in NMP). Fmoc-Cys(Trt)-OH was used for peptides prepared for methylene bridge introduction according to method A, while Fmoc-Cys(Mmt)-OH was used for peptides prepared for methylene bridge introduction according to method B. |
Tags: 77284-32-3 synthesis path| 77284-32-3 SDS| 77284-32-3 COA| 77284-32-3 purity| 77284-32-3 application| 77284-32-3 NMR| 77284-32-3 COA| 77284-32-3 structure
[ 371770-32-0 ]
(S)-2-((((9H-Fluoren-9-yl)methoxy)carbonyl)amino)-3-cyclopentylpropanoic acid
Similarity: 0.99
Precautionary Statements-General | |
Code | Phrase |
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P322 | |
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P376 | Stop leak if safe to do so. Oxidising gases (section 2.4) 1 |
P377 | Leaking gas fire: Do not extinguish, unless leak can be stopped safely. |
P378 | |
P380 | Evacuate area. |
P381 | Eliminate all ignition sources if safe to do so. |
P390 | Absorb spillage to prevent material damage. |
P391 | Collect spillage. Hazardous to the aquatic environment |
P301 + P310 | IF SWALLOWED: Immediately call a POISON CENTER or doctor/physician. |
P301 + P312 | IF SWALLOWED: call a POISON CENTER or doctor/physician IF you feel unwell. |
P301 + P330 + P331 | IF SWALLOWED: Rinse mouth. Do NOT induce vomiting. |
P302 + P334 | IF ON SKIN: Immerse in cool water/wrap in wet bandages. |
P302 + P350 | IF ON SKIN: Gently wash with plenty of soap and water. |
P303 + P361 + P353 | IF ON SKIN (or hair): Remove/Take off Immediately all contaminated clothing. Rinse SKIN with water/shower. |
P304 + P312 | IF INHALED: Call a POISON CENTER or doctor/physician if you feel unwell. |
P304 + P340 | IF INHALED: Remove victim to fresh air and Keep at rest in a position comfortable for breathing. |
P304 + P341 | IF INHALED: If breathing is difficult, remove victim to fresh air and keep at rest in a position comfortable for breathing. |
P305 + P351 + P338 | IF IN EYES: Rinse cautiously with water for several minutes. Remove contact lenses, if present and easy to do. Continue rinsing. |
P306 + P360 | IF ON CLOTHING: Rinse Immediately contaminated CLOTHING and SKIN with plenty of water before removing clothes. |
P307 + P311 | IF exposed: call a POISON CENTER or doctor/physician. |
P308 + P313 | IF exposed or concerned: Get medical advice/attention. |
P309 + P311 | IF exposed or if you feel unwell: call a POISON CENTER or doctor/physician. |
P332 + P313 | IF SKIN irritation occurs: Get medical advice/attention. |
P333 + P313 | IF SKIN irritation or rash occurs: Get medical advice/attention. |
P335 + P334 | Brush off loose particles from skin. Immerse in cool water/wrap in wet bandages. |
P337 + P313 | IF eye irritation persists: Get medical advice/attention. |
P342 + P311 | IF experiencing respiratory symptoms: call a POISON CENTER or doctor/physician. |
P370 + P376 | In case of fire: Stop leak if safe to Do so. |
P370 + P378 | In case of fire: |
P370 + P380 | In case of fire: Evacuate area. |
P370 + P380 + P375 | In case of fire: Evacuate area. Fight fire remotely due to the risk of explosion. |
P371 + P380 + P375 | In case of major fire and large quantities: Evacuate area. Fight fire remotely due to the risk of explosion. |
Storage | |
Code | Phrase |
P401 | |
P402 | Store in a dry place. |
P403 | Store in a well-ventilated place. |
P404 | Store in a closed container. |
P405 | Store locked up. |
P406 | Store in corrosive resistant/ container with a resistant inner liner. |
P407 | Maintain air gap between stacks/pallets. |
P410 | Protect from sunlight. |
P411 | |
P412 | Do not expose to temperatures exceeding 50 oC/ 122 oF. |
P413 | |
P420 | Store away from other materials. |
P422 | |
P402 + P404 | Store in a dry place. Store in a closed container. |
P403 + P233 | Store in a well-ventilated place. Keep container tightly closed. |
P403 + P235 | Store in a well-ventilated place. Keep cool. |
P410 + P403 | Protect from sunlight. Store in a well-ventilated place. |
P410 + P412 | Protect from sunlight. Do not expose to temperatures exceeding 50 oC/122oF. |
P411 + P235 | Keep cool. |
Disposal | |
Code | Phrase |
P501 | Dispose of contents/container to ... |
P502 | Refer to manufacturer/supplier for information on recovery/recycling |
Physical hazards | |
Code | Phrase |
H200 | Unstable explosive |
H201 | Explosive; mass explosion hazard |
H202 | Explosive; severe projection hazard |
H203 | Explosive; fire, blast or projection hazard |
H204 | Fire or projection hazard |
H205 | May mass explode in fire |
H220 | Extremely flammable gas |
H221 | Flammable gas |
H222 | Extremely flammable aerosol |
H223 | Flammable aerosol |
H224 | Extremely flammable liquid and vapour |
H225 | Highly flammable liquid and vapour |
H226 | Flammable liquid and vapour |
H227 | Combustible liquid |
H228 | Flammable solid |
H229 | Pressurized container: may burst if heated |
H230 | May react explosively even in the absence of air |
H231 | May react explosively even in the absence of air at elevated pressure and/or temperature |
H240 | Heating may cause an explosion |
H241 | Heating may cause a fire or explosion |
H242 | Heating may cause a fire |
H250 | Catches fire spontaneously if exposed to air |
H251 | Self-heating; may catch fire |
H252 | Self-heating in large quantities; may catch fire |
H260 | In contact with water releases flammable gases which may ignite spontaneously |
H261 | In contact with water releases flammable gas |
H270 | May cause or intensify fire; oxidizer |
H271 | May cause fire or explosion; strong oxidizer |
H272 | May intensify fire; oxidizer |
H280 | Contains gas under pressure; may explode if heated |
H281 | Contains refrigerated gas; may cause cryogenic burns or injury |
H290 | May be corrosive to metals |
Health hazards | |
Code | Phrase |
H300 | Fatal if swallowed |
H301 | Toxic if swallowed |
H302 | Harmful if swallowed |
H303 | May be harmful if swallowed |
H304 | May be fatal if swallowed and enters airways |
H305 | May be harmful if swallowed and enters airways |
H310 | Fatal in contact with skin |
H311 | Toxic in contact with skin |
H312 | Harmful in contact with skin |
H313 | May be harmful in contact with skin |
H314 | Causes severe skin burns and eye damage |
H315 | Causes skin irritation |
H316 | Causes mild skin irritation |
H317 | May cause an allergic skin reaction |
H318 | Causes serious eye damage |
H319 | Causes serious eye irritation |
H320 | Causes eye irritation |
H330 | Fatal if inhaled |
H331 | Toxic if inhaled |
H332 | Harmful if inhaled |
H333 | May be harmful if inhaled |
H334 | May cause allergy or asthma symptoms or breathing difficulties if inhaled |
H335 | May cause respiratory irritation |
H336 | May cause drowsiness or dizziness |
H340 | May cause genetic defects |
H341 | Suspected of causing genetic defects |
H350 | May cause cancer |
H351 | Suspected of causing cancer |
H360 | May damage fertility or the unborn child |
H361 | Suspected of damaging fertility or the unborn child |
H361d | Suspected of damaging the unborn child |
H362 | May cause harm to breast-fed children |
H370 | Causes damage to organs |
H371 | May cause damage to organs |
H372 | Causes damage to organs through prolonged or repeated exposure |
H373 | May cause damage to organs through prolonged or repeated exposure |
Environmental hazards | |
Code | Phrase |
H400 | Very toxic to aquatic life |
H401 | Toxic to aquatic life |
H402 | Harmful to aquatic life |
H410 | Very toxic to aquatic life with long-lasting effects |
H411 | Toxic to aquatic life with long-lasting effects |
H412 | Harmful to aquatic life with long-lasting effects |
H413 | May cause long-lasting harmful effects to aquatic life |
H420 | Harms public health and the environment by destroying ozone in the upper atmosphere |
Sorry,this product has been discontinued.
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